Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:48:48 (894): wrapper (7.7.26015): starting
14:48:48 (894): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 14:48:48] Arguments: --nthreads 8
[2025-12-02 14:48:48] Threads: 8
[2025-12-02 14:48:48] Checking for CVMFS
[2025-12-02 14:48:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 14:48:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 14:48:49] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 14:48:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 14:48:50] 2.11.2.0 13500 294041 145384 153550 3 297 23079504 25165825 2212 130560 14 135206130 99.868 85755223 2849 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 14:48:50] CVMFS is ok
[2025-12-02 14:48:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 14:48:50] Checking for apptainer binary...
[2025-12-02 14:48:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 14:48:50] Running /usr/bin/apptainer --version
[2025-12-02 14:48:50] apptainer version 1.3.2-1.el7
[2025-12-02 14:48:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 14:49:09] cg-vwn363.simple-grid.lan
[2025-12-02 14:49:09] apptainer works
[2025-12-02 14:49:09] Set ATHENA_PROC_NUMBER=8
[2025-12-02 14:49:09] Set ATHENA_CORE_NUMBER=8
[2025-12-02 14:49:09] Starting ATLAS job with PandaID=6894261742
[2025-12-02 14:49:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 14:09:00]  *** The last 200 lines of the pilot log: ***
[2025-12-03 14:09:00] 2025-12-03 13:08:08,691 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 14:09:00] 2025-12-03 13:08:08,693 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 14:09:00] 2025-12-03 13:08:08,696 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6894261742/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 14:09:00] 2025-12-03 13:08:08,697 | INFO     | extracted standard info from prmon json
[2025-12-03 14:09:00] 2025-12-03 13:08:08,697 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 14:09:00] 2025-12-03 13:08:08,697 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 14:09:00] 2025-12-03 13:08:08,735 | INFO     | fitting pss+swap vs Time
[2025-12-03 14:09:00] 2025-12-03 13:08:08,738 | INFO     | sum of square deviations: 785173979032.4515
[2025-12-03 14:09:00] 2025-12-03 13:08:08,829 | INFO     | sum of deviations: 3524069263720.73
[2025-12-03 14:09:00] 2025-12-03 13:08:08,829 | INFO     | mean x: 1764725610.1166544
[2025-12-03 14:09:00] 2025-12-03 13:08:08,829 | INFO     | mean y: 2859434.4167278064
[2025-12-03 14:09:00] 2025-12-03 13:08:08,830 | INFO     | intersect: -7917697598.276124
[2025-12-03 14:09:00] 2025-12-03 13:08:08,831 | INFO     | chi2: 13.775741819972271
[2025-12-03 14:09:00] 2025-12-03 13:08:08,833 | INFO     | sum of square deviations: 776565156233.6945
[2025-12-03 14:09:00] 2025-12-03 13:08:08,930 | INFO     | sum of deviations: 3974268194041.9756
[2025-12-03 14:09:00] 2025-12-03 13:08:08,931 | INFO     | mean x: 1764725457.620766
[2025-12-03 14:09:00] 2025-12-03 13:08:08,931 | INFO     | mean y: 2867408.2776141386
[2025-12-03 14:09:00] 2025-12-03 13:08:08,931 | INFO     | intersect: -9028560542.280325
[2025-12-03 14:09:00] 2025-12-03 13:08:08,933 | INFO     | chi2: 10.734425897866771
[2025-12-03 14:09:00] 2025-12-03 13:08:08,933 | INFO     | current chi2=10.734425897866771 (change=22.07732956853297 %)
[2025-12-03 14:09:00] 2025-12-03 13:08:08,933 | INFO     | right removable region: 1357
[2025-12-03 14:09:00] 2025-12-03 13:08:08,935 | INFO     | sum of square deviations: 776564227813.6941
[2025-12-03 14:09:00] 2025-12-03 13:08:09,000 | INFO     | sum of deviations: 2956834719004.6064
[2025-12-03 14:09:00] 2025-12-03 13:08:09,001 | INFO     | mean x: 1764725762.620766
[2025-12-03 14:09:00] 2025-12-03 13:08:09,001 | INFO     | mean y: 2869480.822533137
[2025-12-03 14:09:00] 2025-12-03 13:08:09,001 | INFO     | intersect: -6716474802.044454
[2025-12-03 14:09:00] 2025-12-03 13:08:09,003 | INFO     | chi2: 9.165953246331231
[2025-12-03 14:09:00] 2025-12-03 13:08:09,003 | INFO     | current chi2=9.165953246331231 (change=33.463087751526395 %)
[2025-12-03 14:09:00] 2025-12-03 13:08:09,005 | INFO     | sum of square deviations: 768017640569.8895
[2025-12-03 14:09:00] 2025-12-03 13:08:09,072 | INFO     | sum of deviations: 2487438141661.702
[2025-12-03 14:09:00] 2025-12-03 13:08:09,073 | INFO     | mean x: 1764725915.1249075
[2025-12-03 14:09:00] 2025-12-03 13:08:09,073 | INFO     | mean y: 2877855.640798226
[2025-12-03 14:09:00] 2025-12-03 13:08:09,073 | INFO     | intersect: -5712676474.079169
[2025-12-03 14:09:00] 2025-12-03 13:08:09,075 | INFO     | chi2: 6.125243322758842
[2025-12-03 14:09:00] 2025-12-03 13:08:09,075 | INFO     | current chi2=6.125243322758842 (change=33.173962836756395 %)
[2025-12-03 14:09:00] 2025-12-03 13:08:09,077 | INFO     | sum of square deviations: 759534231975.3085
[2025-12-03 14:09:00] 2025-12-03 13:08:09,143 | INFO     | sum of deviations: 2302381815749.9536
[2025-12-03 14:09:00] 2025-12-03 13:08:09,144 | INFO     | mean x: 1764726067.6268547
[2025-12-03 14:09:00] 2025-12-03 13:08:09,144 | INFO     | mean y: 2881178.769287834
[2025-12-03 14:09:00] 2025-12-03 13:08:09,144 | INFO     | intersect: -5346546189.786865
[2025-12-03 14:09:00] 2025-12-03 13:08:09,146 | INFO     | chi2: 5.585801691142805
[2025-12-03 14:09:00] 2025-12-03 13:08:09,146 | INFO     | current chi2=5.585801691142805 (change=8.806860449309784 %)
[2025-12-03 14:09:00] 2025-12-03 13:08:09,146 | INFO     | left removable region: 30
[2025-12-03 14:09:00] 2025-12-03 13:08:09,148 | INFO     | sum of square deviations: 724587346847.922
[2025-12-03 14:09:00] 2025-12-03 13:08:09,231 | INFO     | sum of deviations: 2666915697778.636
[2025-12-03 14:09:00] 2025-12-03 13:08:09,231 | INFO     | mean x: 1764726342.1318765
[2025-12-03 14:09:00] 2025-12-03 13:08:09,231 | INFO     | mean y: 2894767.3278070837
[2025-12-03 14:09:00] 2025-12-03 13:08:09,231 | INFO     | intersect: -6492355811.623799
[2025-12-03 14:09:00] 2025-12-03 13:08:09,233 | INFO     | chi2: 1.6048770783655655
[2025-12-03 14:09:00] 2025-12-03 13:08:09,233 | INFO     | current memory leak: 3.68 B/s (using 1327 data points, chi2=1.60)
[2025-12-03 14:09:00] 2025-12-03 13:08:09,235 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-12-03 14:09:00] 2025-12-03 13:08:09,235 | INFO     | ..............................
[2025-12-03 14:09:00] 2025-12-03 13:08:09,235 | INFO     | . Timing measurements:
[2025-12-03 14:09:00] 2025-12-03 13:08:09,235 | INFO     | . get job = 0 s
[2025-12-03 14:09:00] 2025-12-03 13:08:09,236 | INFO     | . initial setup = 3 s
[2025-12-03 14:09:00] 2025-12-03 13:08:09,236 | INFO     | . payload setup = 158 s
[2025-12-03 14:09:00] 2025-12-03 13:08:09,236 | INFO     | . stage-in = 0 s
[2025-12-03 14:09:00] 2025-12-03 13:08:09,236 | INFO     | . payload execution = 83286 s
[2025-12-03 14:09:00] 2025-12-03 13:08:09,236 | INFO     | . stage-out = 4 s
[2025-12-03 14:09:00] 2025-12-03 13:08:09,236 | INFO     | . log creation = 2 s
[2025-12-03 14:09:00] 2025-12-03 13:08:09,236 | INFO     | ..............................
[2025-12-03 14:09:00] 2025-12-03 13:08:09,394 | INFO     | 
[2025-12-03 14:09:00] 2025-12-03 13:08:09,394 | INFO     | job summary report
[2025-12-03 14:09:00] 2025-12-03 13:08:09,394 | INFO     | --------------------------------------------------
[2025-12-03 14:09:00] 2025-12-03 13:08:09,394 | INFO     | PanDA job id: 6894261742
[2025-12-03 14:09:00] 2025-12-03 13:08:09,394 | INFO     | task id: 47533962
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | errors: (none)
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | pilot state: finished 
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | transexitcode: 0
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | exeerrorcode: 0
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | exeerrordiag: 
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | exitcode: 0
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | exitmsg: OK
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | cpuconsumptiontime: 313915 s
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | nevents: 1000
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | neventsw: 0
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | pid: 11298
[2025-12-03 14:09:00] 2025-12-03 13:08:09,395 | INFO     | pgrp: 11298
[2025-12-03 14:09:00] 2025-12-03 13:08:09,396 | INFO     | corecount: 8
[2025-12-03 14:09:00] 2025-12-03 13:08:09,396 | INFO     | event service: False
[2025-12-03 14:09:00] 2025-12-03 13:08:09,396 | INFO     | sizes: {0: 2284087, 1: 2284342, 2: 2284370, 13: 2284370, 24: 2284426, 35: 2284454, 45: 2284610, 56: 2284638, 67: 2284666, 77: 2284694, 88: 2284750, 89: 2285320, 99
[2025-12-03 14:09:00] 2025-12-03 13:08:09,396 | INFO     | --------------------------------------------------
[2025-12-03 14:09:00] 2025-12-03 13:08:09,396 | INFO     | 
[2025-12-03 14:09:00] 2025-12-03 13:08:09,396 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-03 14:09:00] 2025-12-03 13:08:09,607 | INFO     | time since job start (83745s) is within the limit (172800.0s)
[2025-12-03 14:09:00] 2025-12-03 13:08:09,889 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,890 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,890 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,890 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,890 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,890 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,890 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,890 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,890 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,891 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,891 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,891 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,891 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,891 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,891 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 14:09:00] 2025-12-03 13:08:09,891 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,891 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 14:09:00] 2025-12-03 13:08:09,891 | INFO     | job 6894261742 has completed (purged errors)
[2025-12-03 14:09:00] 2025-12-03 13:08:09,892 | INFO     | overall cleanup function is called
[2025-12-03 14:09:00] 2025-12-03 13:08:10,916 | INFO     | --- collectZombieJob: --- 10, [11298]
[2025-12-03 14:09:00] 2025-12-03 13:08:10,916 | INFO     | zombie collector waiting for pid 11298
[2025-12-03 14:09:00] 2025-12-03 13:08:10,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 14:09:00] 2025-12-03 13:08:10,916 | INFO     | collected zombie processes
[2025-12-03 14:09:00] 2025-12-03 13:08:10,916 | INFO     | will attempt to kill all subprocesses of pid=11298
[2025-12-03 14:09:00] 2025-12-03 13:08:11,027 | INFO     | process IDs to be killed: [11298] (in reverse order)
[2025-12-03 14:09:00] 2025-12-03 13:08:11,622 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 14:09:00] 2025-12-03 13:08:11,623 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 14:09:00] 2025-12-03 13:08:11,626 | INFO     | did not find any defunct processes belonging to 11298
[2025-12-03 14:09:00] 2025-12-03 13:08:11,628 | INFO     | did not find any defunct processes belonging to 11298
[2025-12-03 14:09:00] 2025-12-03 13:08:11,668 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 14:09:00] 2025-12-03 13:08:11,668 | INFO     | ready for new job
[2025-12-03 14:09:00] 2025-12-03 13:08:11,669 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 14:09:00] 2025-12-03 13:08:11,674 | INFO     | ***************************************
[2025-12-03 14:09:00] 2025-12-03 13:08:11,674 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 14:09:00] 2025-12-03 13:08:11,674 | INFO     | ***************************************
[2025-12-03 14:09:00] 2025-12-03 13:08:11,674 | INFO     | 
[2025-12-03 14:09:00] 2025-12-03 13:08:11,675 | INFO     | pilot is running in a VM
[2025-12-03 14:09:00] 2025-12-03 13:08:11,675 | INFO     | architecture information:
[2025-12-03 14:09:00] 2025-12-03 13:08:11,682 | INFO     | executing command: cat /etc/os-release
[2025-12-03 14:09:00] 2025-12-03 13:08:11,965 | INFO     | cat /etc/os-release:
[2025-12-03 14:09:00] NAME="CentOS Linux"
[2025-12-03 14:09:00] VERSION="7 (Core)"
[2025-12-03 14:09:00] ID="centos"
[2025-12-03 14:09:00] ID_LIKE="rhel fedora"
[2025-12-03 14:09:00] VERSION_ID="7"
[2025-12-03 14:09:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 14:09:00] ANSI_COLOR="0;31"
[2025-12-03 14:09:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 14:09:00] HOME_URL="https://www.centos.org/"
[2025-12-03 14:09:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 14:09:00] 
[2025-12-03 14:09:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 14:09:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 14:09:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 14:09:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 14:09:00] 
[2025-12-03 14:09:00] 2025-12-03 13:08:11,965 | INFO     | ***************************************
[2025-12-03 14:09:00] 2025-12-03 13:08:12,468 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-03 14:09:00] 2025-12-03 13:08:12,721 | INFO     | sufficient remaining disk space (491976130560 B)
[2025-12-03 14:09:00] 2025-12-03 13:08:12,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 14:09:00] 2025-12-03 13:08:12,722 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 14:09:00] 2025-12-03 13:08:12,722 | INFO     | update_server=False
[2025-12-03 14:09:00] 2025-12-03 13:08:12,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 14:09:00] 2025-12-03 13:08:12,959 | INFO     | all payload control threads have been joined
[2025-12-03 14:09:00] 2025-12-03 13:08:13,031 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 14:09:00] 2025-12-03 13:08:13,031 | INFO     | aborting loop
[2025-12-03 14:09:00] 2025-12-03 13:08:13,711 | INFO     | all data control threads have been joined
[2025-12-03 14:09:00] 2025-12-03 13:08:13,728 | INFO     | [job] retrieve thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:13,771 | INFO     | [data] copytool_in thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:13,951 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 14:09:00] 2025-12-03 13:08:13,965 | INFO     | [payload] control thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:14,037 | INFO     | [job] job monitor thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:14,076 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:14,117 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:14,170 | INFO     | [payload] failed_post thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:14,368 | INFO     | all job control threads have been joined
[2025-12-03 14:09:00] 2025-12-03 13:08:14,411 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 14:09:00] 2025-12-03 13:08:14,487 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:14,646 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 14:09:00] 2025-12-03 13:08:14,717 | INFO     | [data] control thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:14,803 | INFO     | [job] validate thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:15,008 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:15,227 | INFO     | [payload] validate_post thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:15,374 | INFO     | [job] control thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:15,417 | INFO     | [job] queue monitor thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:15,963 | INFO     | [data] copytool_out thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:18,654 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 14:09:00] 2025-12-03 13:08:22,132 [wrapper] supervise_pilot (15 min periods counter: 94)
[2025-12-03 14:09:00] 2025-12-03 13:08:42,853 | INFO     | PID=4691 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 14:09:00] 2025-12-03 13:08:42,853 | INFO     | .. there are 9 such processes running
[2025-12-03 14:09:00] 2025-12-03 13:08:42,854 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 14:09:00] 2025-12-03 13:08:42,854 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 14:09:00] 2025-12-03 13:08:42,854 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 14:09:00] 2025-12-03 13:08:50,965 | INFO     | [monitor] cgroup control has ended
[2025-12-03 14:09:00] 2025-12-03 13:08:52,735 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139820157060928)>', '<ExcThread(monitor, started 139819506202368)>']
[2025-12-03 14:09:00] 2025-12-03 13:08:52,914 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 14:09:00] 2025-12-03 13:08:52,914 | INFO     | [monitor] control thread has ended
[2025-12-03 14:09:00] 2025-12-03 13:08:57,761 | INFO     | all workflow threads have been joined
[2025-12-03 14:09:00] 2025-12-03 13:08:57,761 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 14:09:00] 2025-12-03 13:08:57,761 | INFO     | traces error code: 0
[2025-12-03 14:09:00] 2025-12-03 13:08:57,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 14:09:00] 2025-12-03 13:08:57,977 [wrapper] ==== pilot stdout END ====
[2025-12-03 14:09:00] 2025-12-03 13:08:58,045 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 14:09:00] 2025-12-03 13:08:58,104 [wrapper] pilotpid: 4691
[2025-12-03 14:09:00] 2025-12-03 13:08:58,172 [wrapper] Pilot exit status: 0
[2025-12-03 14:09:00] 2025-12-03 13:08:58,459 [wrapper] pandaids: 6894261742
[2025-12-03 14:09:00] 2025-12-03 13:08:58,508 [wrapper] cleanup supervisor_pilot 31098 4692
[2025-12-03 14:09:00] 2025-12-03 13:08:58,639 [wrapper] Test setup, not cleaning
[2025-12-03 14:09:00] 2025-12-03 13:08:58,761 [wrapper] apfmon messages muted
[2025-12-03 14:09:00] 2025-12-03 13:08:58,911 [wrapper] ==== wrapper stdout END ====
[2025-12-03 14:09:00] 2025-12-03 13:08:58,981 [wrapper] ==== wrapper stderr END ====
[2025-12-03 14:09:00]  *** Error codes and diagnostics ***
[2025-12-03 14:09:00]     "exeErrorCode": 0,
[2025-12-03 14:09:00]     "exeErrorDiag": "",
[2025-12-03 14:09:00]     "pilotErrorCode": 0,
[2025-12-03 14:09:00]     "pilotErrorDiag": "",
[2025-12-03 14:09:00]  *** Listing of results directory ***
[2025-12-03 14:09:00] total 1317296
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc    576529 Nov 27 17:16 pilot3.tar.gz
[2025-12-03 14:09:00] -rwx------. 1 boinc boinc     36292 Nov 27 17:19 runpilot2-wrapper.sh
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc      5112 Nov 27 17:22 queuedata.json
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc       100 Dec  2 14:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 14:09:00] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 14:48 run_atlas
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc       105 Dec  2 14:48 job.xml
[2025-12-03 14:09:00] -rw-r--r--. 2 boinc boinc 409822007 Dec  2 14:48 EVNT.47493127._001080.pool.root.1
[2025-12-03 14:09:00] drwxrwx--x. 2 boinc boinc        68 Dec  2 14:48 shared
[2025-12-03 14:09:00] -rw-r--r--. 2 boinc boinc    590104 Dec  2 14:48 input.tar.gz
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc      6392 Dec  2 14:48 init_data.xml
[2025-12-03 14:09:00] -rw-r--r--. 2 boinc boinc     15847 Dec  2 14:48 start_atlas.sh
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc         0 Dec  2 14:48 boinc_lockfile
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc      2786 Dec  2 14:49 pandaJob.out
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc    986791 Dec  2 14:52 agis_schedconf.cvmfs.json
[2025-12-03 14:09:00] drwx------. 5 boinc boinc      4096 Dec  2 14:52 pilot3
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc       533 Dec  3 13:52 boinc_task_state.xml
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc 907992022 Dec  3 14:05 HITS.47533962._000798.pool.root.1
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc      1032 Dec  3 14:06 memory_monitor_summary.json
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc   1516240 Dec  3 14:06 agis_ddmendpoints.agis.ALL.json
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc   2450445 Dec  3 14:06 log.47533962._000798.job.log.tgz.1
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc      8639 Dec  3 14:08 heartbeat.json
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc        95 Dec  3 14:08 pilot_heartbeat.json
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc        29 Dec  3 14:08 wrapper_checkpoint.txt
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc      8192 Dec  3 14:08 boinc_mmap_file
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc      4883 Dec  3 14:08 pilotlog.txt
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc  11146145 Dec  3 14:08 log.47533962._000798.job.log.1
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc       353 Dec  3 14:08 output.list
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc       620 Dec  3 14:09 runtime_log
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc  13619200 Dec  3 14:09 result.tar.gz
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc      8817 Dec  3 14:09 runtime_log.err
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc       662 Dec  3 14:09 gZlKDmttti8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmf3NKDmha7cFm.diag
[2025-12-03 14:09:00] -rw-r--r--. 1 boinc boinc     20964 Dec  3 14:09 stderr.txt
[2025-12-03 14:09:00] HITS file was successfully produced:
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc 907992022 Dec  3 14:05 shared/HITS.pool.root.1
[2025-12-03 14:09:00]  *** Contents of shared directory: ***
[2025-12-03 14:09:00] total 1300828
[2025-12-03 14:09:00] -rw-r--r--. 2 boinc boinc 409822007 Dec  2 14:48 ATLAS.root_0
[2025-12-03 14:09:00] -rw-r--r--. 2 boinc boinc    590104 Dec  2 14:48 input.tar.gz
[2025-12-03 14:09:00] -rw-r--r--. 2 boinc boinc     15847 Dec  2 14:48 start_atlas.sh
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc 907992022 Dec  3 14:05 HITS.pool.root.1
[2025-12-03 14:09:00] -rw-------. 1 boinc boinc  13619200 Dec  3 14:09 result.tar.gz
14:09:02 (894): run_atlas exited; CPU time 314501.942745
14:09:02 (894): called boinc_finish(0)

</stderr_txt>
]]>

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