Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:40:25 (18552): wrapper (7.7.26015): starting
12:40:25 (18552): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 12:40:25] Arguments: --nthreads 8
[2025-11-30 12:40:25] Threads: 8
[2025-11-30 12:40:25] Checking for CVMFS
[2025-11-30 12:40:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 12:40:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 12:40:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 12:40:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 12:40:26] 2.11.2.0 17210 123738 143672 153489 3 90 11666016 18432001 1832 130560 0 91961583 99.976 5232744 29642 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 12:40:26] CVMFS is ok
[2025-11-30 12:40:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 12:40:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 12:40:26] Further information can be found at the LHC@home message board.
[2025-11-30 12:40:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 12:40:26] Checking for apptainer binary...
[2025-11-30 12:40:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 12:40:26] Running /usr/bin/apptainer --version
[2025-11-30 12:40:26] apptainer version 1.3.2-1.el7
[2025-11-30 12:40:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 12:40:26] c-206-14.aglt2.org
[2025-11-30 12:40:26] apptainer works
[2025-11-30 12:40:26] Set ATHENA_PROC_NUMBER=8
[2025-11-30 12:40:26] Set ATHENA_CORE_NUMBER=8
[2025-11-30 12:40:26] Starting ATLAS job with PandaID=6896261714
[2025-11-30 12:40:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 05:14:23]  *** The last 200 lines of the pilot log: ***
[2025-12-01 05:14:23] 2025-12-01 10:13:37,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 05:14:23] 2025-12-01 10:13:37,632 | INFO     | time since job start (59580s) is within the limit (172800.0s)
[2025-12-01 05:14:23] 2025-12-01 10:13:39,506 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 05:14:23] 2025-12-01 10:13:39,510 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2405.7916666666665
[2025-12-01 05:14:23] 2025-12-01 10:13:39,513 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896261714/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 05:14:23] 2025-12-01 10:13:39,513 | INFO     | extracted standard info from prmon json
[2025-12-01 05:14:23] 2025-12-01 10:13:39,514 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 05:14:23] 2025-12-01 10:13:39,514 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 05:14:23] 2025-12-01 10:13:39,527 | INFO     | fitting pss+swap vs Time
[2025-12-01 05:14:23] 2025-12-01 10:13:39,528 | INFO     | sum of square deviations: 289175959495.49243
[2025-12-01 05:14:23] 2025-12-01 10:13:39,544 | INFO     | sum of deviations: 1584891668197.5874
[2025-12-01 05:14:23] 2025-12-01 10:13:39,544 | INFO     | mean x: 1764554234.5946777
[2025-12-01 05:14:23] 2025-12-01 10:13:39,545 | INFO     | mean y: 3361647.7666325485
[2025-12-01 05:14:23] 2025-12-01 10:13:39,545 | INFO     | intersect: -9667661176.436943
[2025-12-01 05:14:23] 2025-12-01 10:13:39,546 | INFO     | chi2: 6.365333268722879
[2025-12-01 05:14:23] 2025-12-01 10:13:39,546 | INFO     | sum of square deviations: 284759067833.71497
[2025-12-01 05:14:23] 2025-12-01 10:13:39,569 | INFO     | sum of deviations: 1947880145479.1292
[2025-12-01 05:14:23] 2025-12-01 10:13:39,570 | INFO     | mean x: 1764554082.0977366
[2025-12-01 05:14:23] 2025-12-01 10:13:39,570 | INFO     | mean y: 3374172.651234568
[2025-12-01 05:14:23] 2025-12-01 10:13:39,570 | INFO     | intersect: -12066969673.780542
[2025-12-01 05:14:23] 2025-12-01 10:13:39,571 | INFO     | chi2: 3.426438855584224
[2025-12-01 05:14:23] 2025-12-01 10:13:39,571 | INFO     | current chi2=3.426438855584224 (change=46.17031487698217 %)
[2025-12-01 05:14:23] 2025-12-01 10:13:39,573 | INFO     | sum of square deviations: 280387386321.9195
[2025-12-01 05:14:23] 2025-12-01 10:13:39,602 | INFO     | sum of deviations: 2114484226135.8635
[2025-12-01 05:14:23] 2025-12-01 10:13:39,602 | INFO     | mean x: 1764553929.6008272
[2025-12-01 05:14:23] 2025-12-01 10:13:39,602 | INFO     | mean y: 3379981.6680455017
[2025-12-01 05:14:23] 2025-12-01 10:13:39,602 | INFO     | intersect: -13303643202.40348
[2025-12-01 05:14:23] 2025-12-01 10:13:39,603 | INFO     | chi2: 2.7155410781939615
[2025-12-01 05:14:23] 2025-12-01 10:13:39,603 | INFO     | current chi2=2.7155410781939615 (change=20.74742341401131 %)
[2025-12-01 05:14:23] 2025-12-01 10:13:39,603 | INFO     | right removable region: 966
[2025-12-01 05:14:23] 2025-12-01 10:13:39,604 | INFO     | sum of square deviations: 284758713423.7151
[2025-12-01 05:14:23] 2025-12-01 10:13:39,621 | INFO     | sum of deviations: 1275692867570.9375
[2025-12-01 05:14:23] 2025-12-01 10:13:39,621 | INFO     | mean x: 1764554387.0977366
[2025-12-01 05:14:23] 2025-12-01 10:13:39,621 | INFO     | mean y: 3372307.9269547327
[2025-12-01 05:14:23] 2025-12-01 10:13:39,621 | INFO     | intersect: -7901669188.422639
[2025-12-01 05:14:23] 2025-12-01 10:13:39,622 | INFO     | chi2: 4.086270617130514
[2025-12-01 05:14:23] 2025-12-01 10:13:39,622 | INFO     | current chi2=4.086270617130514 (change=35.80429421961169 %)
[2025-12-01 05:14:23] 2025-12-01 10:13:39,623 | INFO     | sum of square deviations: 280386855500.5144
[2025-12-01 05:14:23] 2025-12-01 10:13:39,641 | INFO     | sum of deviations: 1210902605448.2832
[2025-12-01 05:14:23] 2025-12-01 10:13:39,642 | INFO     | time since job start (59582s) is within the limit (172800.0s)
[2025-12-01 05:14:23] 2025-12-01 10:13:39,642 | INFO     | mean x: 1764554539.597725
[2025-12-01 05:14:23] 2025-12-01 10:13:39,642 | INFO     | mean y: 3374567.2192347464
[2025-12-01 05:14:23] 2025-12-01 10:13:39,642 | INFO     | intersect: -7617181273.889234
[2025-12-01 05:14:23] 2025-12-01 10:13:39,644 | INFO     | chi2: 4.0477023014189015
[2025-12-01 05:14:23] 2025-12-01 10:13:39,644 | INFO     | current chi2=4.0477023014189015 (change=0.9438512356456658 %)
[2025-12-01 05:14:23] 2025-12-01 10:13:39,644 | INFO     | left removable region: 20
[2025-12-01 05:14:23] 2025-12-01 10:13:39,646 | INFO     | sum of square deviations: 262513880412.6394
[2025-12-01 05:14:23] 2025-12-01 10:13:39,669 | INFO     | sum of deviations: 1680761536980.162
[2025-12-01 05:14:23] 2025-12-01 10:13:39,669 | INFO     | mean x: 1764554509.1046512
[2025-12-01 05:14:23] 2025-12-01 10:13:39,669 | INFO     | mean y: 3397213.735729387
[2025-12-01 05:14:23] 2025-12-01 10:13:39,669 | INFO     | intersect: -11294273386.181292
[2025-12-01 05:14:23] 2025-12-01 10:13:39,670 | INFO     | chi2: 0.27606460820416634
[2025-12-01 05:14:23] 2025-12-01 10:13:39,670 | INFO     | current memory leak: 6.40 B/s (using 946 data points, chi2=0.28)
[2025-12-01 05:14:23] 2025-12-01 10:13:39,671 | INFO     | could have reported an average CPU frequency of 2628 MHz (36 samples)
[2025-12-01 05:14:23] 2025-12-01 10:13:39,671 | INFO     | ..............................
[2025-12-01 05:14:23] 2025-12-01 10:13:39,671 | INFO     | . Timing measurements:
[2025-12-01 05:14:23] 2025-12-01 10:13:39,671 | INFO     | . get job = 0 s
[2025-12-01 05:14:23] 2025-12-01 10:13:39,671 | INFO     | . initial setup = 2 s
[2025-12-01 05:14:23] 2025-12-01 10:13:39,671 | INFO     | . payload setup = 8 s
[2025-12-01 05:14:23] 2025-12-01 10:13:39,671 | INFO     | . stage-in = 0 s
[2025-12-01 05:14:23] 2025-12-01 10:13:39,672 | INFO     | . payload execution = 59542 s
[2025-12-01 05:14:23] 2025-12-01 10:13:39,672 | INFO     | . stage-out = 3 s
[2025-12-01 05:14:23] 2025-12-01 10:13:39,672 | INFO     | . log creation = 0 s
[2025-12-01 05:14:23] 2025-12-01 10:13:39,672 | INFO     | ..............................
[2025-12-01 05:14:23] 2025-12-01 10:13:39,888 | INFO     | 
[2025-12-01 05:14:23] 2025-12-01 10:13:39,888 | INFO     | job summary report
[2025-12-01 05:14:23] 2025-12-01 10:13:39,888 | INFO     | --------------------------------------------------
[2025-12-01 05:14:23] 2025-12-01 10:13:39,888 | INFO     | PanDA job id: 6896261714
[2025-12-01 05:14:23] 2025-12-01 10:13:39,888 | INFO     | task id: 47538121
[2025-12-01 05:14:23] 2025-12-01 10:13:39,888 | INFO     | errors: (none)
[2025-12-01 05:14:23] 2025-12-01 10:13:39,888 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 05:14:23] 2025-12-01 10:13:39,888 | INFO     | pilot state: finished 
[2025-12-01 05:14:23] 2025-12-01 10:13:39,888 | INFO     | transexitcode: 0
[2025-12-01 05:14:23] 2025-12-01 10:13:39,889 | INFO     | exeerrorcode: 0
[2025-12-01 05:14:23] 2025-12-01 10:13:39,889 | INFO     | exeerrordiag: 
[2025-12-01 05:14:23] 2025-12-01 10:13:39,889 | INFO     | exitcode: 0
[2025-12-01 05:14:23] 2025-12-01 10:13:39,889 | INFO     | exitmsg: OK
[2025-12-01 05:14:23] 2025-12-01 10:13:39,889 | INFO     | cpuconsumptiontime: 459811 s
[2025-12-01 05:14:23] 2025-12-01 10:13:39,889 | INFO     | nevents: 1000
[2025-12-01 05:14:23] 2025-12-01 10:13:39,889 | INFO     | neventsw: 0
[2025-12-01 05:14:23] 2025-12-01 10:13:39,889 | INFO     | pid: 30529
[2025-12-01 05:14:23] 2025-12-01 10:13:39,889 | INFO     | pgrp: 30529
[2025-12-01 05:14:23] 2025-12-01 10:13:39,889 | INFO     | corecount: 8
[2025-12-01 05:14:23] 2025-12-01 10:13:39,890 | INFO     | event service: False
[2025-12-01 05:14:23] 2025-12-01 10:13:39,890 | INFO     | sizes: {0: 2284276, 1: 2284475, 4: 2284737, 12: 2284765, 59555: 2355902, 59560: 2364896, 59563: 2365080, 59567: 2365326}
[2025-12-01 05:14:23] 2025-12-01 10:13:39,890 | INFO     | --------------------------------------------------
[2025-12-01 05:14:23] 2025-12-01 10:13:39,890 | INFO     | 
[2025-12-01 05:14:23] 2025-12-01 10:13:39,890 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-01 05:14:23] 2025-12-01 10:13:39,918 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,918 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,918 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,918 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,919 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,919 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,919 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,919 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,919 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,919 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,919 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,919 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,919 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,920 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,920 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,920 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,920 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,920 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 05:14:23] 2025-12-01 10:13:39,921 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,921 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 05:14:23] 2025-12-01 10:13:39,921 | INFO     | job 6896261714 has completed (purged errors)
[2025-12-01 05:14:23] 2025-12-01 10:13:39,921 | INFO     | overall cleanup function is called
[2025-12-01 05:14:23] 2025-12-01 10:13:40,938 | INFO     | --- collectZombieJob: --- 10, [30529]
[2025-12-01 05:14:23] 2025-12-01 10:13:40,939 | INFO     | zombie collector waiting for pid 30529
[2025-12-01 05:14:23] 2025-12-01 10:13:40,939 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 05:14:23] 2025-12-01 10:13:40,939 | INFO     | collected zombie processes
[2025-12-01 05:14:23] 2025-12-01 10:13:40,939 | INFO     | will attempt to kill all subprocesses of pid=30529
[2025-12-01 05:14:23] 2025-12-01 10:13:41,111 | INFO     | process IDs to be killed: [30529] (in reverse order)
[2025-12-01 05:14:23] 2025-12-01 10:13:41,173 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 05:14:23] 2025-12-01 10:13:41,174 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 05:14:23] 2025-12-01 10:13:41,179 | INFO     | did not find any defunct processes belonging to 30529
[2025-12-01 05:14:23] 2025-12-01 10:13:41,184 | INFO     | did not find any defunct processes belonging to 30529
[2025-12-01 05:14:23] 2025-12-01 10:13:41,186 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 05:14:23] 2025-12-01 10:13:41,186 | INFO     | ready for new job
[2025-12-01 05:14:23] 2025-12-01 10:13:41,187 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 05:14:23] 2025-12-01 10:13:41,191 | INFO     | ***************************************
[2025-12-01 05:14:23] 2025-12-01 10:13:41,191 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 05:14:23] 2025-12-01 10:13:41,191 | INFO     | ***************************************
[2025-12-01 05:14:23] 2025-12-01 10:13:41,191 | INFO     | 
[2025-12-01 05:14:23] 2025-12-01 10:13:41,193 | INFO     | architecture information:
[2025-12-01 05:14:23] 2025-12-01 10:13:41,193 | INFO     | executing command: cat /etc/os-release
[2025-12-01 05:14:23] 2025-12-01 10:13:41,205 | INFO     | cat /etc/os-release:
[2025-12-01 05:14:23] NAME="CentOS Linux"
[2025-12-01 05:14:23] VERSION="7 (Core)"
[2025-12-01 05:14:23] ID="centos"
[2025-12-01 05:14:23] ID_LIKE="rhel fedora"
[2025-12-01 05:14:23] VERSION_ID="7"
[2025-12-01 05:14:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 05:14:23] ANSI_COLOR="0;31"
[2025-12-01 05:14:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 05:14:23] HOME_URL="https://www.centos.org/"
[2025-12-01 05:14:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 05:14:23] 
[2025-12-01 05:14:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 05:14:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 05:14:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 05:14:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 05:14:23] 
[2025-12-01 05:14:23] 2025-12-01 10:13:41,205 | INFO     | ***************************************
[2025-12-01 05:14:23] 2025-12-01 10:13:41,708 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-01 05:14:23] 2025-12-01 10:13:41,721 | INFO     | sufficient remaining disk space (25973227520 B)
[2025-12-01 05:14:23] 2025-12-01 10:13:41,721 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 05:14:23] 2025-12-01 10:13:41,722 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 05:14:23] 2025-12-01 10:13:41,722 | INFO     | update_server=False
[2025-12-01 05:14:23] 2025-12-01 10:13:41,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 05:14:23] 2025-12-01 10:13:41,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 05:14:23] 2025-12-01 10:13:41,723 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 05:14:23] 2025-12-01 10:13:41,723 | INFO     | aborting loop
[2025-12-01 05:14:23] 2025-12-01 10:13:41,876 | INFO     | all payload control threads have been joined
[2025-12-01 05:14:23] 2025-12-01 10:13:42,079 | INFO     | all job control threads have been joined
[2025-12-01 05:14:23] 2025-12-01 10:13:42,100 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 05:14:23] 2025-12-01 10:13:42,536 | INFO     | all data control threads have been joined
[2025-12-01 05:14:23] 2025-12-01 10:13:42,727 | INFO     | [job] retrieve thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:42,728 | INFO     | [job] queue monitor thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:42,728 | INFO     | [job] job monitor thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:42,883 | INFO     | [payload] control thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:42,897 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:43,001 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 05:14:23] 2025-12-01 10:13:43,085 | INFO     | [job] control thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:43,217 | INFO     | [job] validate thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:43,297 | INFO     | [data] copytool_in thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:43,477 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:43,507 | INFO     | [payload] validate_post thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:43,542 | INFO     | [data] control thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:43,595 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:43,935 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:44,254 | INFO     | [payload] failed_post thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:45,007 | INFO     | [data] copytool_out thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:13:46,108 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 05:14:23] 2025-12-01 10:14:12,905 | INFO     | PID=22266 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 05:14:23] 2025-12-01 10:14:12,905 | INFO     | .. there are 3 such processes running
[2025-12-01 05:14:23] 2025-12-01 10:14:12,905 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 05:14:23] 2025-12-01 10:14:12,906 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 05:14:23] 2025-12-01 10:14:12,906 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 05:14:23] 2025-12-01 10:14:16,149 | INFO     | [monitor] cgroup control has ended
[2025-12-01 05:14:23] 2025-12-01 10:14:17,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139628632246080)>', '<ExcThread(monitor, started 139627969111808)>']
[2025-12-01 05:14:23] 2025-12-01 10:14:17,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 05:14:23] 2025-12-01 10:14:17,927 | INFO     | [monitor] control thread has ended
[2025-12-01 05:14:23] 2025-12-01 10:14:22,854 | INFO     | all workflow threads have been joined
[2025-12-01 05:14:23] 2025-12-01 10:14:22,854 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 05:14:23] 2025-12-01 10:14:22,854 | INFO     | traces error code: 0
[2025-12-01 05:14:23] 2025-12-01 10:14:22,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 05:14:23] 2025-12-01 10:14:22,948 [wrapper] ==== pilot stdout END ====
[2025-12-01 05:14:23] 2025-12-01 10:14:22,954 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 05:14:23] 2025-12-01 10:14:22,956 [wrapper] pilotpid: 22266
[2025-12-01 05:14:23] 2025-12-01 10:14:22,958 [wrapper] Pilot exit status: 0
[2025-12-01 05:14:23] 2025-12-01 10:14:22,965 [wrapper] pandaids: 6896261714
[2025-12-01 05:14:23] 2025-12-01 10:14:22,994 [wrapper] cleanup supervisor_pilot 30497 22267
[2025-12-01 05:14:23] 2025-12-01 10:14:22,996 [wrapper] Test setup, not cleaning
[2025-12-01 05:14:23] 2025-12-01 10:14:22,999 [wrapper] apfmon messages muted
[2025-12-01 05:14:23] 2025-12-01 10:14:23,001 [wrapper] ==== wrapper stdout END ====
[2025-12-01 05:14:23] 2025-12-01 10:14:23,003 [wrapper] ==== wrapper stderr END ====
[2025-12-01 05:14:23]  *** Error codes and diagnostics ***
[2025-12-01 05:14:23]     "exeErrorCode": 0,
[2025-12-01 05:14:23]     "exeErrorDiag": "",
[2025-12-01 05:14:23]     "pilotErrorCode": 0,
[2025-12-01 05:14:23]     "pilotErrorDiag": "",
[2025-12-01 05:14:23]  *** Listing of results directory ***
[2025-12-01 05:14:23] total 1067872
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-12-01 05:14:23] -rwx------ 1 boincer umatlas     36292 Nov 28 05:31 runpilot2-wrapper.sh
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas      5112 Nov 28 05:33 queuedata.json
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas       100 Nov 30 12:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 05:14:23] -rwxr-xr-x 1 boincer umatlas      7986 Nov 30 12:40 run_atlas
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas       105 Nov 30 12:40 job.xml
[2025-12-01 05:14:23] -rw-r--r-- 2 boincer umatlas 374666432 Nov 30 12:40 EVNT.47528880._000002.pool.root.1
[2025-12-01 05:14:23] -rw-r--r-- 2 boincer umatlas     15847 Nov 30 12:40 start_atlas.sh
[2025-12-01 05:14:23] drwxrwx--x 2 boincer umatlas      4096 Nov 30 12:40 shared
[2025-12-01 05:14:23] -rw-r--r-- 2 boincer umatlas    611307 Nov 30 12:40 input.tar.gz
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas         0 Nov 30 12:40 boinc_lockfile
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas      2878 Nov 30 12:40 pandaJob.out
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas        57 Nov 30 12:40 setup.sh.local
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas    993063 Nov 30 12:40 agis_schedconf.cvmfs.json
[2025-12-01 05:14:23] drwx------ 7 boincer umatlas      4096 Nov 30 12:40 pilot3
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas       533 Dec  1 04:58 boinc_task_state.xml
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas 693730931 Dec  1 05:13 HITS.47538121._000016.pool.root.1
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas      5954 Dec  1 05:13 init_data.xml
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas      1064 Dec  1 05:13 memory_monitor_summary.json
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas        95 Dec  1 05:13 pilot_heartbeat.json
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas   1516240 Dec  1 05:13 agis_ddmendpoints.agis.ALL.json
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas   2284531 Dec  1 05:13 log.47538121._000016.job.log.tgz.1
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas     27936 Dec  1 05:13 heartbeat.json
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 05:14 boinc_mmap_file
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas        29 Dec  1 05:14 wrapper_checkpoint.txt
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas      4821 Dec  1 05:14 pilotlog.txt
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas   8268255 Dec  1 05:14 log.47538121._000016.job.log.1
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas       353 Dec  1 05:14 output.list
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas       620 Dec  1 05:14 runtime_log
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas  10588160 Dec  1 05:14 result.tar.gz
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas       667 Dec  1 05:14 zPYMDmUwAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7dOKDmfEoXGm.diag
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas      9343 Dec  1 05:14 runtime_log.err
[2025-12-01 05:14:23] -rw-r--r-- 1 boincer umatlas     21314 Dec  1 05:14 stderr.txt
[2025-12-01 05:14:23] HITS file was successfully produced:
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas 693730931 Dec  1 05:13 shared/HITS.pool.root.1
[2025-12-01 05:14:23]  *** Contents of shared directory: ***
[2025-12-01 05:14:23] total 1054324
[2025-12-01 05:14:23] -rw-r--r-- 2 boincer umatlas 374666432 Nov 30 12:40 ATLAS.root_0
[2025-12-01 05:14:23] -rw-r--r-- 2 boincer umatlas     15847 Nov 30 12:40 start_atlas.sh
[2025-12-01 05:14:23] -rw-r--r-- 2 boincer umatlas    611307 Nov 30 12:40 input.tar.gz
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas 693730931 Dec  1 05:13 HITS.pool.root.1
[2025-12-01 05:14:23] -rw------- 1 boincer umatlas  10588160 Dec  1 05:14 result.tar.gz
05:14:25 (18552): run_atlas exited; CPU time 458793.327301
05:14:25 (18552): called boinc_finish(0)

</stderr_txt>
]]>

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