Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:37:24 (4143867): wrapper (7.7.26015): starting
19:37:24 (4143867): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 19:37:24] Arguments: --nthreads 8
[2025-11-30 19:37:24] Threads: 8
[2025-11-30 19:37:24] Checking for CVMFS
[2025-11-30 19:37:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 19:37:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 19:37:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 19:37:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 19:37:25] 2.13.3.0 11235 34844 189208 153499 2 821 25181715 32935936 45631 16776704 0 280280915 99.584 284407413 33093 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-30 19:37:25] CVMFS is ok
[2025-11-30 19:37:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 19:37:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 19:37:25] Further information can be found at the LHC@home message board.
[2025-11-30 19:37:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 19:37:25] Checking for apptainer binary...
[2025-11-30 19:37:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 19:37:25] Running /usr/bin/apptainer --version
[2025-11-30 19:37:25] apptainer version 1.4.4-1.el9
[2025-11-30 19:37:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 19:37:26] c7-2-37.aglt2.org
[2025-11-30 19:37:26] apptainer works
[2025-11-30 19:37:26] Set ATHENA_PROC_NUMBER=8
[2025-11-30 19:37:26] Set ATHENA_CORE_NUMBER=8
[2025-11-30 19:37:26] Starting ATLAS job with PandaID=6895233062
[2025-11-30 19:37:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:08 (4143867): BOINC client no longer exists - exiting
00:20:08 (4143867): timer handler: client dead, exiting
00:28:41 (3681438): wrapper (7.7.26015): starting
00:28:41 (3681438): wrapper: running run_atlas (--nthreads 9)
[2025-12-01 00:28:41] Arguments: --nthreads 9
[2025-12-01 00:28:41] Threads: 9
[2025-12-01 00:28:41] This job has been restarted, cleaning up previous attempt
[2025-12-01 00:28:41] Checking for CVMFS
[2025-12-01 00:28:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 00:28:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 00:28:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 00:28:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 00:28:43] 2.13.3.0 11235 35135 190844 153507 0 640 32480188 32935936 36191 16776704 0 285029553 99.586 286442225 33060 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-01 00:28:43] CVMFS is ok
[2025-12-01 00:28:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 00:28:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 00:28:43] Further information can be found at the LHC@home message board.
[2025-12-01 00:28:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 00:28:43] Checking for apptainer binary...
[2025-12-01 00:28:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 00:28:43] Running /usr/bin/apptainer --version
[2025-12-01 00:28:43] apptainer version 1.4.4-1.el9
[2025-12-01 00:28:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 00:28:43] c7-2-37.aglt2.org
[2025-12-01 00:28:43] apptainer works
[2025-12-01 00:28:43] Set ATHENA_PROC_NUMBER=9
[2025-12-01 00:28:43] Set ATHENA_CORE_NUMBER=9
[2025-12-01 00:28:43] Starting ATLAS job with PandaID=6895233062
[2025-12-01 00:28:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 15:57:56]  *** The last 200 lines of the pilot log: ***
[2025-12-02 15:57:56] 2025-12-02 20:56:39,429 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3369.1480000000024
[2025-12-02 15:57:56] 2025-12-02 20:56:39,459 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895233062/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 15:57:56] 2025-12-02 20:56:39,459 | INFO     | extracted standard info from prmon json
[2025-12-02 15:57:56] 2025-12-02 20:56:39,459 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 15:57:56] 2025-12-02 20:56:39,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 15:57:56] 2025-12-02 20:56:39,507 | INFO     | fitting pss+swap vs Time
[2025-12-02 15:57:56] 2025-12-02 20:56:39,513 | INFO     | sum of square deviations: 3912195227290.3926
[2025-12-02 15:57:56] 2025-12-02 20:56:40,252 | INFO     | sum of deviations: 17789420388314.793
[2025-12-02 15:57:56] 2025-12-02 20:56:40,253 | INFO     | mean x: 1764637973.0764606
[2025-12-02 15:57:56] 2025-12-02 20:56:40,253 | INFO     | mean y: 3564443.8045532648
[2025-12-02 15:57:56] 2025-12-02 20:56:40,253 | INFO     | intersect: -8020546039.552656
[2025-12-02 15:57:56] 2025-12-02 20:56:40,254 | INFO     | chi2: 12.328071357187405
[2025-12-02 15:57:56] 2025-12-02 20:56:40,270 | INFO     | sum of square deviations: 3887042609887.937
[2025-12-02 15:57:56] 2025-12-02 20:56:40,663 | INFO     | sum of deviations: 18857419513546.727
[2025-12-02 15:57:56] 2025-12-02 20:56:40,671 | INFO     | mean x: 1764637820.5798535
[2025-12-02 15:57:56] 2025-12-02 20:56:40,671 | INFO     | mean y: 3570919.0068876455
[2025-12-02 15:57:56] 2025-12-02 20:56:40,671 | INFO     | intersect: -8557311739.571547
[2025-12-02 15:57:56] 2025-12-02 20:56:40,673 | INFO     | chi2: 8.530841563364406
[2025-12-02 15:57:56] 2025-12-02 20:56:40,673 | INFO     | current chi2=8.530841563364406 (change=30.801491034598616 %)
[2025-12-02 15:57:56] 2025-12-02 20:56:40,679 | INFO     | sum of square deviations: 3861998041022.934
[2025-12-02 15:57:56] 2025-12-02 20:56:40,908 | INFO     | monitor loop #6003: job 0:6895233062 is in state 'finished'
[2025-12-02 15:57:56] 2025-12-02 20:56:40,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:57:56] 2025-12-02 20:56:41,139 | INFO     | sum of deviations: 19988927307247.074
[2025-12-02 15:57:56] 2025-12-02 20:56:41,140 | INFO     | mean x: 1764637668.0832615
[2025-12-02 15:57:56] 2025-12-02 20:56:41,140 | INFO     | mean y: 3577809.0823986195
[2025-12-02 15:57:56] 2025-12-02 20:56:41,140 | INFO     | intersect: -9129832849.407583
[2025-12-02 15:57:56] 2025-12-02 20:56:41,170 | INFO     | chi2: 4.3957080723844975
[2025-12-02 15:57:56] 2025-12-02 20:56:41,170 | INFO     | current chi2=4.3957080723844975 (change=48.472749848481406 %)
[2025-12-02 15:57:56] 2025-12-02 20:56:41,172 | INFO     | sum of square deviations: 3837061288132.8677
[2025-12-02 15:57:56] 2025-12-02 20:56:41,661 | INFO     | sum of deviations: 20390461750533.848
[2025-12-02 15:57:56] 2025-12-02 20:56:41,661 | INFO     | mean x: 1764637515.586684
[2025-12-02 15:57:56] 2025-12-02 20:56:41,661 | INFO     | mean y: 3580263.9308257676
[2025-12-02 15:57:56] 2025-12-02 20:56:41,662 | INFO     | intersect: -9373849769.936646
[2025-12-02 15:57:56] 2025-12-02 20:56:41,663 | INFO     | chi2: 3.647031152566535
[2025-12-02 15:57:56] 2025-12-02 20:56:41,663 | INFO     | current chi2=3.647031152566535 (change=17.03199820118707 %)
[2025-12-02 15:57:56] 2025-12-02 20:56:41,664 | INFO     | right removable region: 2312
[2025-12-02 15:57:56] 2025-12-02 20:56:41,665 | INFO     | sum of square deviations: 3887040371187.933
[2025-12-02 15:57:56] 2025-12-02 20:56:42,097 | INFO     | sum of deviations: 16830066416644.574
[2025-12-02 15:57:56] 2025-12-02 20:56:42,097 | INFO     | mean x: 1764638125.5798535
[2025-12-02 15:57:56] 2025-12-02 20:56:42,097 | INFO     | mean y: 3570258.5036590616
[2025-12-02 15:57:56] 2025-12-02 20:56:42,098 | INFO     | intersect: -7636941292.390191
[2025-12-02 15:57:56] 2025-12-02 20:56:42,099 | INFO     | chi2: 9.508850580587625
[2025-12-02 15:57:56] 2025-12-02 20:56:42,100 | INFO     | current chi2=9.508850580587625 (change=22.86830352386095 %)
[2025-12-02 15:57:56] 2025-12-02 20:56:42,100 | INFO     | left removable region: 10
[2025-12-02 15:57:56] 2025-12-02 20:56:42,101 | INFO     | sum of square deviations: 3782576148872.273
[2025-12-02 15:57:56] 2025-12-02 20:56:42,301 | INFO     | sum of deviations: 19130989000450.29
[2025-12-02 15:57:56] 2025-12-02 20:56:42,301 | INFO     | mean x: 1764637790.0877497
[2025-12-02 15:57:56] 2025-12-02 20:56:42,301 | INFO     | mean y: 3588687.315377932
[2025-12-02 15:57:56] 2025-12-02 20:56:42,301 | INFO     | intersect: -8921351571.194035
[2025-12-02 15:57:56] 2025-12-02 20:56:42,303 | INFO     | chi2: 0.39983784276602874
[2025-12-02 15:57:56] 2025-12-02 20:56:42,303 | INFO     | current memory leak: 5.06 B/s (using 2302 data points, chi2=0.40)
[2025-12-02 15:57:56] 2025-12-02 20:56:42,305 | INFO     | could have reported an average CPU frequency of 3294 MHz (81 samples)
[2025-12-02 15:57:56] 2025-12-02 20:56:42,305 | INFO     | ..............................
[2025-12-02 15:57:56] 2025-12-02 20:56:42,305 | INFO     | . Timing measurements:
[2025-12-02 15:57:56] 2025-12-02 20:56:42,305 | INFO     | . get job = 0 s
[2025-12-02 15:57:56] 2025-12-02 20:56:42,305 | INFO     | . initial setup = 2 s
[2025-12-02 15:57:56] 2025-12-02 20:56:42,305 | INFO     | . payload setup = 19 s
[2025-12-02 15:57:56] 2025-12-02 20:56:42,305 | INFO     | . stage-in = 0 s
[2025-12-02 15:57:56] 2025-12-02 20:56:42,305 | INFO     | . payload execution = 141981 s
[2025-12-02 15:57:56] 2025-12-02 20:56:42,305 | INFO     | . stage-out = 11 s
[2025-12-02 15:57:56] 2025-12-02 20:56:42,306 | INFO     | . log creation = 2 s
[2025-12-02 15:57:56] 2025-12-02 20:56:42,306 | INFO     | ..............................
[2025-12-02 15:57:56] 2025-12-02 20:56:42,428 | INFO     | 
[2025-12-02 15:57:56] 2025-12-02 20:56:42,428 | INFO     | job summary report
[2025-12-02 15:57:56] 2025-12-02 20:56:42,428 | INFO     | --------------------------------------------------
[2025-12-02 15:57:56] 2025-12-02 20:56:42,428 | INFO     | PanDA job id: 6895233062
[2025-12-02 15:57:56] 2025-12-02 20:56:42,428 | INFO     | task id: 47538113
[2025-12-02 15:57:56] 2025-12-02 20:56:42,428 | INFO     | errors: (none)
[2025-12-02 15:57:56] 2025-12-02 20:56:42,428 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 15:57:56] 2025-12-02 20:56:42,428 | INFO     | pilot state: finished 
[2025-12-02 15:57:56] 2025-12-02 20:56:42,429 | INFO     | transexitcode: 0
[2025-12-02 15:57:56] 2025-12-02 20:56:42,429 | INFO     | exeerrorcode: 0
[2025-12-02 15:57:56] 2025-12-02 20:56:42,429 | INFO     | exeerrordiag: 
[2025-12-02 15:57:56] 2025-12-02 20:56:42,429 | INFO     | exitcode: 0
[2025-12-02 15:57:56] 2025-12-02 20:56:42,430 | INFO     | exitmsg: OK
[2025-12-02 15:57:56] 2025-12-02 20:56:42,430 | INFO     | cpuconsumptiontime: 159179 s
[2025-12-02 15:57:56] 2025-12-02 20:56:42,430 | INFO     | nevents: 1000
[2025-12-02 15:57:56] 2025-12-02 20:56:42,430 | INFO     | neventsw: 0
[2025-12-02 15:57:56] 2025-12-02 20:56:42,430 | INFO     | pid: 3793990
[2025-12-02 15:57:56] 2025-12-02 20:56:42,430 | INFO     | pgrp: 3793990
[2025-12-02 15:57:56] 2025-12-02 20:56:42,430 | INFO     | corecount: 9
[2025-12-02 15:57:56] 2025-12-02 20:56:42,430 | INFO     | event service: False
[2025-12-02 15:57:56] 2025-12-02 20:56:42,430 | INFO     | sizes: {0: 2284284, 1: 2284483, 8: 2284745, 11: 2284773, 142007: 2284773, 142008: 2388771, 142021: 2397949, 142022: 2398005, 142038: 2398029}
[2025-12-02 15:57:56] 2025-12-02 20:56:42,430 | INFO     | --------------------------------------------------
[2025-12-02 15:57:56] 2025-12-02 20:56:42,430 | INFO     | 
[2025-12-02 15:57:56] 2025-12-02 20:56:42,430 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-02 15:57:56] 2025-12-02 20:56:42,580 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,580 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,580 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,580 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,580 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,580 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,581 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 15:57:56] 2025-12-02 20:56:42,582 | INFO     | job 6895233062 has completed (purged errors)
[2025-12-02 15:57:56] 2025-12-02 20:56:42,582 | INFO     | overall cleanup function is called
[2025-12-02 15:57:56] 2025-12-02 20:56:43,704 | INFO     | --- collectZombieJob: --- 10, [3793990]
[2025-12-02 15:57:56] 2025-12-02 20:56:43,704 | INFO     | zombie collector waiting for pid 3793990
[2025-12-02 15:57:56] 2025-12-02 20:56:43,704 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 15:57:56] 2025-12-02 20:56:43,704 | INFO     | collected zombie processes
[2025-12-02 15:57:56] 2025-12-02 20:56:43,704 | INFO     | will attempt to kill all subprocesses of pid=3793990
[2025-12-02 15:57:56] 2025-12-02 20:56:47,085 | INFO     | PID=3718802 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-02 15:57:56] 2025-12-02 20:56:47,085 | INFO     | .. there are 76 such processes running
[2025-12-02 15:57:56] 2025-12-02 20:56:49,220 | INFO     | process IDs to be killed: [3793990] (in reverse order)
[2025-12-02 15:57:56] 2025-12-02 20:56:49,520 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 15:57:56] 2025-12-02 20:56:49,520 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 15:57:56] 2025-12-02 20:56:49,673 | INFO     | did not find any defunct processes belonging to 3793990
[2025-12-02 15:57:56] 2025-12-02 20:56:49,898 | INFO     | did not find any defunct processes belonging to 3793990
[2025-12-02 15:57:56] 2025-12-02 20:56:49,926 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 15:57:56] 2025-12-02 20:56:49,926 | INFO     | ready for new job
[2025-12-02 15:57:56] 2025-12-02 20:56:49,926 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 15:57:56] 2025-12-02 20:56:49,974 | INFO     | ***************************************
[2025-12-02 15:57:56] 2025-12-02 20:56:49,974 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 15:57:56] 2025-12-02 20:56:49,974 | INFO     | ***************************************
[2025-12-02 15:57:56] 2025-12-02 20:56:49,974 | INFO     | 
[2025-12-02 15:57:56] 2025-12-02 20:56:49,979 | INFO     | architecture information:
[2025-12-02 15:57:56] 2025-12-02 20:56:49,980 | INFO     | executing command: cat /etc/os-release
[2025-12-02 15:57:56] 2025-12-02 20:56:50,025 | INFO     | cat /etc/os-release:
[2025-12-02 15:57:56] NAME="CentOS Linux"
[2025-12-02 15:57:56] VERSION="7 (Core)"
[2025-12-02 15:57:56] ID="centos"
[2025-12-02 15:57:56] ID_LIKE="rhel fedora"
[2025-12-02 15:57:56] VERSION_ID="7"
[2025-12-02 15:57:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 15:57:56] ANSI_COLOR="0;31"
[2025-12-02 15:57:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 15:57:56] HOME_URL="https://www.centos.org/"
[2025-12-02 15:57:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 15:57:56] 
[2025-12-02 15:57:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 15:57:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 15:57:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 15:57:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 15:57:56] 
[2025-12-02 15:57:56] 2025-12-02 20:56:50,025 | INFO     | ***************************************
[2025-12-02 15:57:56] 2025-12-02 20:56:50,530 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-02 15:57:56] 2025-12-02 20:56:50,645 | INFO     | sufficient remaining disk space (70704431104 B)
[2025-12-02 15:57:56] 2025-12-02 20:56:50,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 15:57:56] 2025-12-02 20:56:50,645 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 15:57:56] 2025-12-02 20:56:50,645 | INFO     | update_server=False
[2025-12-02 15:57:56] 2025-12-02 20:56:50,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 15:57:56] 2025-12-02 20:56:50,647 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:57:56] 2025-12-02 20:56:50,647 | INFO     | aborting loop
[2025-12-02 15:57:56] 2025-12-02 20:56:50,650 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 15:57:56] 2025-12-02 20:56:50,650 | INFO     | all data control threads have been joined
[2025-12-02 15:57:56] 2025-12-02 20:56:51,254 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 15:57:56] 2025-12-02 20:56:51,528 | INFO     | all job control threads have been joined
[2025-12-02 15:57:56] 2025-12-02 20:56:51,622 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:57:56] 2025-12-02 20:56:51,653 | INFO     | [job] retrieve thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:51,654 | INFO     | [job] job monitor thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:51,657 | INFO     | [data] control thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:51,723 | INFO     | [payload] validate_post thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:51,723 | INFO     | [payload] failed_post thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:51,780 | INFO     | all payload control threads have been joined
[2025-12-02 15:57:56] 2025-12-02 20:56:52,044 | INFO     | [job] validate thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:52,260 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:52,543 | INFO     | [job] control thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:52,630 | INFO     | [job] queue monitor thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:52,767 | INFO     | [data] copytool_in thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:52,767 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:52,813 | INFO     | [payload] control thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:52,853 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:52,906 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:53,261 | INFO     | [data] copytool_out thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:56:54,674 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 15:57:56] 2025-12-02 20:57:23,294 | INFO     | PID=3718802 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 15:57:56] 2025-12-02 20:57:23,297 | INFO     | .. there are 76 such processes running
[2025-12-02 15:57:56] 2025-12-02 20:57:23,300 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 15:57:56] 2025-12-02 20:57:23,300 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 15:57:56] 2025-12-02 20:57:23,300 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 15:57:56] 2025-12-02 20:57:48,941 | INFO     | [monitor] cgroup control has ended
[2025-12-02 15:57:56] 2025-12-02 20:57:50,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140238513379136)>', '<ExcThread(monitor, started 140237778966272)>']
[2025-12-02 15:57:56] 2025-12-02 20:57:51,562 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 15:57:56] 2025-12-02 20:57:51,562 | INFO     | [monitor] control thread has ended
[2025-12-02 15:57:56] 2025-12-02 20:57:55,621 | INFO     | all workflow threads have been joined
[2025-12-02 15:57:56] 2025-12-02 20:57:55,621 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 15:57:56] 2025-12-02 20:57:55,621 | INFO     | traces error code: 0
[2025-12-02 15:57:56] 2025-12-02 20:57:55,621 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 15:57:56] 2025-12-02 20:57:56,126 [wrapper] ==== pilot stdout END ====
[2025-12-02 15:57:56] 2025-12-02 20:57:56,153 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 15:57:56] 2025-12-02 20:57:56,194 [wrapper] pilotpid: 3718802
[2025-12-02 15:57:56] 2025-12-02 20:57:56,201 [wrapper] Pilot exit status: 0
[2025-12-02 15:57:56] 2025-12-02 20:57:56,289 [wrapper] pandaids: 6895233062 6895233062
[2025-12-02 15:57:56] 2025-12-02 20:57:56,473 [wrapper] cleanup supervisor_pilot 3612600 3718803
[2025-12-02 15:57:56] 2025-12-02 20:57:56,485 [wrapper] Test setup, not cleaning
[2025-12-02 15:57:56] 2025-12-02 20:57:56,491 [wrapper] apfmon messages muted
[2025-12-02 15:57:56] 2025-12-02 20:57:56,497 [wrapper] ==== wrapper stdout END ====
[2025-12-02 15:57:56] 2025-12-02 20:57:56,499 [wrapper] ==== wrapper stderr END ====
[2025-12-02 15:57:56]  *** Error codes and diagnostics ***
[2025-12-02 15:57:56]     "exeErrorCode": 0,
[2025-12-02 15:57:56]     "exeErrorDiag": "",
[2025-12-02 15:57:56]     "pilotErrorCode": 0,
[2025-12-02 15:57:56]     "pilotErrorDiag": "",
[2025-12-02 15:57:56]  *** Listing of results directory ***
[2025-12-02 15:57:56] total 1444340
[2025-12-02 15:57:56] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 05:28 pilot3.tar.gz
[2025-12-02 15:57:56] -rwx------. 1 boincer umatlas     36292 Nov 28 05:28 runpilot2-wrapper.sh
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 05:32 queuedata.json
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas       100 Nov 30 19:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 15:57:56] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 30 19:37 run_atlas
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas       105 Nov 30 19:37 job.xml
[2025-12-02 15:57:56] -rw-r--r--. 3 boincer umatlas 374059177 Nov 30 19:37 EVNT.47528871._000147.pool.root.1
[2025-12-02 15:57:56] -rw-r--r--. 3 boincer umatlas 374059177 Nov 30 19:37 ATLAS.root_0
[2025-12-02 15:57:56] -rw-r--r--. 2 boincer umatlas    590129 Nov 30 19:37 input.tar.gz
[2025-12-02 15:57:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 19:37 start_atlas.sh
[2025-12-02 15:57:56] drwxrwx--x. 2 boincer umatlas      4096 Nov 30 19:37 shared
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas         0 Nov 30 19:37 boinc_lockfile
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas      2882 Dec  1 00:28 pandaJob.out
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas        57 Dec  1 00:28 setup.sh.local
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas    992521 Dec  1 00:29 agis_schedconf.cvmfs.json
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas       534 Dec  2 15:36 boinc_task_state.xml
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas      6948 Dec  2 15:49 init_data.xml
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas 691741665 Dec  2 15:55 HITS.47538113._001468.pool.root.1
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas      1062 Dec  2 15:56 memory_monitor_summary.json
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas   1516240 Dec  2 15:56 agis_ddmendpoints.agis.ALL.json
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas   3058927 Dec  2 15:56 log.47538113._001468.job.log.tgz.1
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas     26884 Dec  2 15:56 heartbeat.json
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas        96 Dec  2 15:57 pilot_heartbeat.json
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas        30 Dec  2 15:57 wrapper_checkpoint.txt
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas      4824 Dec  2 15:57 pilotlog.txt
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas  14529053 Dec  2 15:57 log.47538113._001468.job.log.1
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas       353 Dec  2 15:57 output.list
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas       620 Dec  2 15:57 runtime_log
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas  17623040 Dec  2 15:57 result.tar.gz
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas       793 Dec  2 15:57 Zc8MDmgtAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbFLKDmmb3gQm.diag
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas      9424 Dec  2 15:57 runtime_log.err
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 15:57 boinc_mmap_file
[2025-12-02 15:57:56] -rw-r--r--. 1 boincer umatlas     23757 Dec  2 15:57 stderr.txt
[2025-12-02 15:57:56] HITS file was successfully produced:
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas 691741665 Dec  2 15:55 shared/HITS.pool.root.1
[2025-12-02 15:57:56]  *** Contents of shared directory: ***
[2025-12-02 15:57:56] total 1058644
[2025-12-02 15:57:56] -rw-r--r--. 3 boincer umatlas 374059177 Nov 30 19:37 ATLAS.root_0
[2025-12-02 15:57:56] -rw-r--r--. 2 boincer umatlas    590129 Nov 30 19:37 input.tar.gz
[2025-12-02 15:57:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 19:37 start_atlas.sh
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas 691741665 Dec  2 15:55 HITS.pool.root.1
[2025-12-02 15:57:56] -rw-------. 1 boincer umatlas  17623040 Dec  2 15:57 result.tar.gz
15:57:58 (3681438): run_atlas exited; CPU time 162244.897444
15:57:58 (3681438): called boinc_finish(0)

</stderr_txt>
]]>

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