Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:15:00 (872613): wrapper (7.7.26015): starting
03:15:00 (872613): wrapper: running run_atlas (--nthreads 4)
[2025-12-03 03:15:00] Arguments: --nthreads 4
[2025-12-03 03:15:00] Threads: 4
[2025-12-03 03:15:00] Checking for CVMFS
[2025-12-03 03:15:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:15:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:15:00] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:15:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:15:00] 2.9.2.0 3303 5765 92868 153576 1 81 29103663 36864001 453 130560 0 2508439 99.984 201713 694 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-03 03:15:00] CVMFS is ok
[2025-12-03 03:15:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:15:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:15:00] Further information can be found at the LHC@home message board.
[2025-12-03 03:15:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:15:00] Checking for apptainer binary...
[2025-12-03 03:15:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 03:15:00] Running /usr/bin/apptainer --version
[2025-12-03 03:15:00] apptainer version 1.4.1-1.1
[2025-12-03 03:15:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:15:00] thA373a
[2025-12-03 03:15:00] apptainer works
[2025-12-03 03:15:00] Set ATHENA_PROC_NUMBER=4
[2025-12-03 03:15:00] Set ATHENA_CORE_NUMBER=4
[2025-12-03 03:15:00] Starting ATLAS job with PandaID=6895234655
[2025-12-03 03:15:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 09:08:41]  *** The last 200 lines of the pilot log: ***
[2025-12-03 09:08:41] 2025-12-03 08:07:57,796 | INFO     | zombie collector waiting for pid 883639
[2025-12-03 09:08:41] 2025-12-03 08:07:57,796 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 09:08:41] 2025-12-03 08:07:57,796 | INFO     | collected zombie processes
[2025-12-03 09:08:41] 2025-12-03 08:07:57,796 | INFO     | will attempt to kill all subprocesses of pid=883639
[2025-12-03 09:08:41] 2025-12-03 08:07:57,841 | INFO     | process IDs to be killed: [883639] (in reverse order)
[2025-12-03 09:08:41] 2025-12-03 08:07:57,874 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 09:08:41] 2025-12-03 08:07:57,874 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 09:08:41] 2025-12-03 08:07:57,876 | INFO     | did not find any defunct processes belonging to 883639
[2025-12-03 09:08:41] 2025-12-03 08:07:57,877 | INFO     | did not find any defunct processes belonging to 883639
[2025-12-03 09:08:41] 2025-12-03 08:07:57,878 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 09:08:41] 2025-12-03 08:07:57,878 | INFO     | ready for new job
[2025-12-03 09:08:41] 2025-12-03 08:07:57,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 09:08:41] 2025-12-03 08:07:57,879 | INFO     | ***************************************
[2025-12-03 09:08:41] 2025-12-03 08:07:57,879 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 09:08:41] 2025-12-03 08:07:57,879 | INFO     | ***************************************
[2025-12-03 09:08:41] 2025-12-03 08:07:57,879 | INFO     | 
[2025-12-03 09:08:41] 2025-12-03 08:07:57,879 | INFO     | architecture information:
[2025-12-03 09:08:41] 2025-12-03 08:07:57,880 | INFO     | executing command: cat /etc/os-release
[2025-12-03 09:08:41] 2025-12-03 08:07:57,894 | INFO     | cat /etc/os-release:
[2025-12-03 09:08:41] NAME="CentOS Linux"
[2025-12-03 09:08:41] VERSION="7 (Core)"
[2025-12-03 09:08:41] ID="centos"
[2025-12-03 09:08:41] ID_LIKE="rhel fedora"
[2025-12-03 09:08:41] VERSION_ID="7"
[2025-12-03 09:08:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 09:08:41] ANSI_COLOR="0;31"
[2025-12-03 09:08:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 09:08:41] HOME_URL="https://www.centos.org/"
[2025-12-03 09:08:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 09:08:41] 
[2025-12-03 09:08:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 09:08:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 09:08:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 09:08:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 09:08:41] 
[2025-12-03 09:08:41] 2025-12-03 08:07:57,894 | INFO     | ***************************************
[2025-12-03 09:08:41] 2025-12-03 08:07:58,398 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-03 09:08:41] 2025-12-03 08:07:58,415 | INFO     | sufficient remaining disk space (328715993088 B)
[2025-12-03 09:08:41] 2025-12-03 08:07:58,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 09:08:41] 2025-12-03 08:07:58,415 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 09:08:41] 2025-12-03 08:07:58,415 | INFO     | update_server=False
[2025-12-03 09:08:41] 2025-12-03 08:07:58,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 09:08:41] 2025-12-03 08:07:58,415 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-03 09:08:41] 2025-12-03 08:07:58,416 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 09:08:41] 2025-12-03 08:07:58,416 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 09:08:41] 2025-12-03 08:07:58,416 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:08:41] 2025-12-03 08:07:58,416 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 09:08:41] 2025-12-03 08:07:58,416 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 09:08:41] 2025-12-03 08:07:58,583 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 09:08:41] 2025-12-03 08:07:58,583 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 09:08:41] 2025-12-03 08:07:58,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:08:41] 2025-12-03 08:07:58,583 | INFO     | will abort loop
[2025-12-03 09:08:41] 2025-12-03 08:07:58,613 | INFO     | all job control threads have been joined
[2025-12-03 09:08:41] 2025-12-03 08:07:59,238 | INFO     | all data control threads have been joined
[2025-12-03 09:08:41] 2025-12-03 08:07:59,421 | INFO     | [job] retrieve thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:07:59,421 | INFO     | [job] queue monitor thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:07:59,552 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:07:59,583 | INFO     | all payload control threads have been joined
[2025-12-03 09:08:41] 2025-12-03 08:07:59,589 | INFO     | [job] job monitor thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:07:59,619 | INFO     | [job] control thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:08:00,209 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:08:00,244 | INFO     | [data] control thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:08:00,373 | INFO     | [job] validate thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:08:00,422 | INFO     | [data] copytool_out thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:08:00,479 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:08:00,552 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:08:00,589 | INFO     | [payload] control thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:08:00,597 | INFO     | [payload] failed_post thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:08:00,798 | INFO     | [data] copytool_in thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:08:00,958 | INFO     | [payload] validate_post thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:08:01,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 09:08:41] 2025-12-03 08:08:05,923 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 09:08:41] 2025-12-03 08:08:36,398 | INFO     | [monitor] cgroup control has ended
[2025-12-03 09:08:41] 2025-12-03 08:08:36,660 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140428891969344)>', '<ExcThread(monitor, started 140427999024896)>']
[2025-12-03 09:08:41] 2025-12-03 08:08:37,620 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 09:08:41] 2025-12-03 08:08:37,620 | INFO     | [monitor] control thread has ended
[2025-12-03 09:08:41] 2025-12-03 08:08:41,685 | INFO     | all workflow threads have been joined
[2025-12-03 09:08:41] 2025-12-03 08:08:41,686 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 09:08:41] 2025-12-03 08:08:41,686 | INFO     | traces error code: 0
[2025-12-03 09:08:41] 2025-12-03 08:08:41,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 09:08:41] 2025-12-03 08:08:41,766 [wrapper] ==== pilot stdout END ====
[2025-12-03 09:08:41] 2025-12-03 08:08:41,770 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 09:08:41] 2025-12-03 08:08:41,774 [wrapper] pilotpid: 876409
[2025-12-03 09:08:41] 2025-12-03 08:08:41,778 [wrapper] Pilot exit status: 0
[2025-12-03 09:08:41] 2025-12-03 08:08:41,790 [wrapper] pandaids: 6895234655
[2025-12-03 09:08:41] 2025-12-03 08:08:41,814 [wrapper] cleanup supervisor_pilot  925125 876410
[2025-12-03 09:08:41] 2025-12-03 08:08:41,817 [wrapper] Test setup, not cleaning
[2025-12-03 09:08:41] 2025-12-03 08:08:41,821 [wrapper] apfmon messages muted
[2025-12-03 09:08:41] 2025-12-03 08:08:41,825 [wrapper] ==== wrapper stdout END ====
[2025-12-03 09:08:41] 2025-12-03 08:08:41,829 [wrapper] ==== wrapper stderr END ====
[2025-12-03 09:08:41]  *** Error codes and diagnostics ***
[2025-12-03 09:08:41]     "exeErrorCode": 0,
[2025-12-03 09:08:41]     "exeErrorDiag": "",
[2025-12-03 09:08:41]     "pilotErrorCode": 0,
[2025-12-03 09:08:41]     "pilotErrorDiag": "",
[2025-12-03 09:08:41]  *** Listing of results directory ***
[2025-12-03 09:08:41] total 1050960
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc    576529 Nov 28 11:28 pilot3.tar.gz
[2025-12-03 09:08:41] -rwx------ 1 boinc boinc     36292 Nov 28 11:31 runpilot2-wrapper.sh
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc      5112 Nov 28 11:33 queuedata.json
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc       100 Dec  3 03:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 09:08:41] -rwxr-xr-x 1 boinc boinc      7986 Dec  3 03:15 run_atlas
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc       105 Dec  3 03:15 job.xml
[2025-12-03 09:08:41] -rw-r--r-- 2 boinc boinc 374145243 Dec  3 03:15 EVNT.47530720._000137.pool.root.1
[2025-12-03 09:08:41] -rw-r--r-- 2 boinc boinc    590118 Dec  3 03:15 input.tar.gz
[2025-12-03 09:08:41] -rw-r--r-- 2 boinc boinc     15847 Dec  3 03:15 start_atlas.sh
[2025-12-03 09:08:41] drwxrwx--x 2 boinc boinc      4096 Dec  3 03:15 shared
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc         0 Dec  3 03:15 boinc_setup_complete
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc      6379 Dec  3 03:15 init_data.xml
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc         0 Dec  3 03:15 boinc_lockfile
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc      2889 Dec  3 03:15 pandaJob.out
[2025-12-03 09:08:41] -rw------- 1 boinc boinc    989300 Dec  3 03:15 agis_schedconf.cvmfs.json
[2025-12-03 09:08:41] drwx------ 5 boinc boinc      4096 Dec  3 03:15 pilot3
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc       531 Dec  3 09:02 boinc_task_state.xml
[2025-12-03 09:08:41] -rw------- 1 boinc boinc        95 Dec  3 09:07 pilot_heartbeat.json
[2025-12-03 09:08:41] -rw------- 1 boinc boinc 689507617 Dec  3 09:07 HITS.47530725._001365.pool.root.1
[2025-12-03 09:08:41] -rw------- 1 boinc boinc      1026 Dec  3 09:07 memory_monitor_summary.json
[2025-12-03 09:08:41] -rw------- 1 boinc boinc   1516240 Dec  3 09:07 agis_ddmendpoints.agis.ALL.json
[2025-12-03 09:08:41] -rw------- 1 boinc boinc   1303306 Dec  3 09:07 log.47530725._001365.job.log.tgz.1
[2025-12-03 09:08:41] -rw------- 1 boinc boinc     27515 Dec  3 09:07 heartbeat.json
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc      8192 Dec  3 09:08 boinc_mmap_file
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc        28 Dec  3 09:08 wrapper_checkpoint.txt
[2025-12-03 09:08:41] -rw------- 1 boinc boinc      4742 Dec  3 09:08 pilotlog.txt
[2025-12-03 09:08:41] -rw------- 1 boinc boinc   2990235 Dec  3 09:08 log.47530725._001365.job.log.1
[2025-12-03 09:08:41] -rw------- 1 boinc boinc       353 Dec  3 09:08 output.list
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc       620 Dec  3 09:08 runtime_log
[2025-12-03 09:08:41] -rw------- 1 boinc boinc   4331520 Dec  3 09:08 result.tar.gz
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc      8903 Dec  3 09:08 runtime_log.err
[2025-12-03 09:08:41] -rw------- 1 boinc boinc       666 Dec  3 09:08 TtAODm9vAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMMLKDmHQoKzm.diag
[2025-12-03 09:08:41] -rw-r--r-- 1 boinc boinc     10880 Dec  3 09:08 stderr.txt
[2025-12-03 09:08:41] HITS file was successfully produced:
[2025-12-03 09:08:41] -rw------- 1 boinc boinc 689507617 Dec  3 09:07 shared/HITS.pool.root.1
[2025-12-03 09:08:41]  *** Contents of shared directory: ***
[2025-12-03 09:08:41] total 1043564
[2025-12-03 09:08:41] -rw-r--r-- 2 boinc boinc 374145243 Dec  3 03:15 ATLAS.root_0
[2025-12-03 09:08:41] -rw-r--r-- 2 boinc boinc    590118 Dec  3 03:15 input.tar.gz
[2025-12-03 09:08:41] -rw-r--r-- 2 boinc boinc     15847 Dec  3 03:15 start_atlas.sh
[2025-12-03 09:08:41] -rw------- 1 boinc boinc 689507617 Dec  3 09:07 HITS.pool.root.1
[2025-12-03 09:08:41] -rw------- 1 boinc boinc   4331520 Dec  3 09:08 result.tar.gz
09:08:43 (872613): run_atlas exited; CPU time 82281.926308
09:08:43 (872613): called boinc_finish(0)

</stderr_txt>
]]>

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