Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:40:33 (2971146): wrapper (7.7.26015): starting
05:40:33 (2971146): wrapper: running run_atlas (--nthreads 3)
[2025-12-03 05:40:33] Arguments: --nthreads 3
[2025-12-03 05:40:33] Threads: 3
[2025-12-03 05:40:33] Checking for CVMFS
[2025-12-03 05:40:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 05:40:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 05:40:33] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 05:40:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 05:40:33] 2.9.2.0 237354 20675 100168 153581 1 68 22616195 36864000 0 130560 1 7626699 99.956 909789 852 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-03 05:40:33] CVMFS is ok
[2025-12-03 05:40:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 05:40:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 05:40:33] Further information can be found at the LHC@home message board.
[2025-12-03 05:40:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 05:40:33] Checking for apptainer binary...
[2025-12-03 05:40:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 05:40:33] Running /usr/bin/apptainer --version
[2025-12-03 05:40:33] apptainer version 1.4.1-1.1
[2025-12-03 05:40:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 05:40:33] cosA127b
[2025-12-03 05:40:33] apptainer works
[2025-12-03 05:40:33] Set ATHENA_PROC_NUMBER=3
[2025-12-03 05:40:33] Set ATHENA_CORE_NUMBER=3
[2025-12-03 05:40:33] Starting ATLAS job with PandaID=6901021159
[2025-12-03 05:40:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 12:23:21]  *** The last 200 lines of the pilot log: ***
[2025-12-03 12:23:21] 2025-12-03 11:22:50,399 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6901021159/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 12:23:21] 2025-12-03 11:22:50,437 | INFO     | number of running child processes to parent process 2981985: 1
[2025-12-03 12:23:21] 2025-12-03 11:22:50,437 | INFO     | maximum number of monitored processes: 8
[2025-12-03 12:23:21] 2025-12-03 11:22:50,653 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 12:23:21] 2025-12-03 11:22:50,654 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3458.482333333334
[2025-12-03 12:23:21] 2025-12-03 11:22:50,655 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6901021159/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 12:23:21] 2025-12-03 11:22:50,655 | INFO     | extracted standard info from prmon json
[2025-12-03 12:23:21] 2025-12-03 11:22:50,655 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 12:23:21] 2025-12-03 11:22:50,655 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 12:23:21] 2025-12-03 11:22:50,658 | INFO     | fitting pss+swap vs Time
[2025-12-03 12:23:21] 2025-12-03 11:22:50,658 | INFO     | sum of square deviations: 19255784295.0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,659 | INFO     | sum of deviations: 153220039790.9999
[2025-12-03 12:23:21] 2025-12-03 11:22:50,659 | INFO     | mean x: 1764748907.5
[2025-12-03 12:23:21] 2025-12-03 11:22:50,659 | INFO     | mean y: 2588003.237373737
[2025-12-03 12:23:21] 2025-12-03 11:22:50,659 | INFO     | intersect: -14039680734.602869
[2025-12-03 12:23:21] 2025-12-03 11:22:50,660 | INFO     | chi2: 4.952980729216523
[2025-12-03 12:23:21] 2025-12-03 11:22:50,660 | INFO     | sum of square deviations: 18535566140.0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,661 | INFO     | sum of deviations: 230168814921.00003
[2025-12-03 12:23:21] 2025-12-03 11:22:50,661 | INFO     | mean x: 1764748755.0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,661 | INFO     | mean y: 2604213.265984655
[2025-12-03 12:23:21] 2025-12-03 11:22:50,661 | INFO     | intersect: -21911489292.35921
[2025-12-03 12:23:21] 2025-12-03 11:22:50,661 | INFO     | chi2: 2.9305538602384966
[2025-12-03 12:23:21] 2025-12-03 11:22:50,661 | INFO     | current chi2=2.9305538602384966 (change=40.8325204466915 %)
[2025-12-03 12:23:21] 2025-12-03 11:22:50,661 | INFO     | sum of square deviations: 17833534372.5
[2025-12-03 12:23:21] 2025-12-03 11:22:50,663 | INFO     | sum of deviations: 227039494791.0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,663 | INFO     | mean x: 1764748602.5
[2025-12-03 12:23:21] 2025-12-03 11:22:50,663 | INFO     | mean y: 2603533.5803108807
[2025-12-03 12:23:21] 2025-12-03 11:22:50,663 | INFO     | intersect: -22464486992.37669
[2025-12-03 12:23:21] 2025-12-03 11:22:50,663 | INFO     | chi2: 2.928623686114843
[2025-12-03 12:23:21] 2025-12-03 11:22:50,663 | INFO     | current chi2=2.928623686114843 (change=0.06586379966742534 %)
[2025-12-03 12:23:21] 2025-12-03 11:22:50,663 | INFO     | right removable region: 385
[2025-12-03 12:23:21] 2025-12-03 11:22:50,663 | INFO     | sum of square deviations: 18535566140.0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,664 | INFO     | sum of deviations: 45102548684.0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,664 | INFO     | mean x: 1764749060.0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,664 | INFO     | mean y: 2610864.9616368287
[2025-12-03 12:23:21] 2025-12-03 11:22:50,664 | INFO     | intersect: -4291548795.0407004
[2025-12-03 12:23:21] 2025-12-03 11:22:50,665 | INFO     | chi2: 2.442731583120262
[2025-12-03 12:23:21] 2025-12-03 11:22:50,665 | INFO     | current chi2=2.442731583120262 (change=50.681585157173416 %)
[2025-12-03 12:23:21] 2025-12-03 11:22:50,665 | INFO     | sum of square deviations: 17833534372.5
[2025-12-03 12:23:21] 2025-12-03 11:22:50,666 | INFO     | sum of deviations: 15261601254.500015
[2025-12-03 12:23:21] 2025-12-03 11:22:50,666 | INFO     | mean x: 1764749212.5
[2025-12-03 12:23:21] 2025-12-03 11:22:50,666 | INFO     | mean y: 2617305.981865285
[2025-12-03 12:23:21] 2025-12-03 11:22:50,666 | INFO     | intersect: -1507621675.9722385
[2025-12-03 12:23:21] 2025-12-03 11:22:50,666 | INFO     | chi2: 2.0929851544677267
[2025-12-03 12:23:21] 2025-12-03 11:22:50,666 | INFO     | current chi2=2.0929851544677267 (change=14.317841185226793 %)
[2025-12-03 12:23:21] 2025-12-03 11:22:50,666 | INFO     | left removable region: 20
[2025-12-03 12:23:21] 2025-12-03 11:22:50,667 | INFO     | sum of square deviations: 15078347830.0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | sum of deviations: 78194232381.99998
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | mean x: 1764749182.0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | mean y: 2636821.21369863
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | intersect: -9149109058.974846
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | chi2: 0.02441060600033242
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | current memory leak: 5.19 B/s (using 365 data points, chi2=0.02)
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | could have reported an average CPU frequency of 3964 MHz (17 samples)
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | ..............................
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | . Timing measurements:
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | . get job = 0 s
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | . initial setup = 1 s
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | . payload setup = 4 s
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | . stage-in = 0 s
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | . payload execution = 24105 s
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | . stage-out = 0 s
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | . log creation = 0 s
[2025-12-03 12:23:21] 2025-12-03 11:22:50,668 | INFO     | ..............................
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | 
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | job summary report
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | --------------------------------------------------
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | PanDA job id: 6901021159
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | task id: 47531058
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | errors: (none)
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | pilot state: finished 
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | transexitcode: 0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | exeerrorcode: 0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | exeerrordiag: 
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | exitcode: 0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | exitmsg: OK
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | cpuconsumptiontime: 70928 s
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | nevents: 1000
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | neventsw: 0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | pid: 2981985
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | pgrp: 2981985
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | corecount: 3
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | event service: False
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | sizes: {0: 2284285, 1: 2284484, 3: 2284746, 11: 2284774, 24113: 2340467, 24115: 2349467, 24116: 2349651, 24119: 2349961}
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | --------------------------------------------------
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | 
[2025-12-03 12:23:21] 2025-12-03 11:22:50,699 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-03 12:23:21] 2025-12-03 11:22:50,711 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,711 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,711 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,711 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,711 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | job 6901021159 has completed (purged errors)
[2025-12-03 12:23:21] 2025-12-03 11:22:50,712 | INFO     | overall cleanup function is called
[2025-12-03 12:23:21] 2025-12-03 11:22:51,721 | INFO     | --- collectZombieJob: --- 10, [2981985]
[2025-12-03 12:23:21] 2025-12-03 11:22:51,721 | INFO     | zombie collector waiting for pid 2981985
[2025-12-03 12:23:21] 2025-12-03 11:22:51,721 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 12:23:21] 2025-12-03 11:22:51,721 | INFO     | collected zombie processes
[2025-12-03 12:23:21] 2025-12-03 11:22:51,721 | INFO     | will attempt to kill all subprocesses of pid=2981985
[2025-12-03 12:23:21] 2025-12-03 11:22:51,762 | INFO     | process IDs to be killed: [2981985] (in reverse order)
[2025-12-03 12:23:21] 2025-12-03 11:22:51,785 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 12:23:21] 2025-12-03 11:22:51,785 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 12:23:21] 2025-12-03 11:22:51,787 | INFO     | did not find any defunct processes belonging to 2981985
[2025-12-03 12:23:21] 2025-12-03 11:22:51,788 | INFO     | did not find any defunct processes belonging to 2981985
[2025-12-03 12:23:21] 2025-12-03 11:22:51,788 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 12:23:21] 2025-12-03 11:22:51,788 | INFO     | ready for new job
[2025-12-03 12:23:21] 2025-12-03 11:22:51,788 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 12:23:21] 2025-12-03 11:22:51,789 | INFO     | ***************************************
[2025-12-03 12:23:21] 2025-12-03 11:22:51,789 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 12:23:21] 2025-12-03 11:22:51,789 | INFO     | ***************************************
[2025-12-03 12:23:21] 2025-12-03 11:22:51,789 | INFO     | 
[2025-12-03 12:23:21] 2025-12-03 11:22:51,790 | INFO     | architecture information:
[2025-12-03 12:23:21] 2025-12-03 11:22:51,790 | INFO     | executing command: cat /etc/os-release
[2025-12-03 12:23:21] 2025-12-03 11:22:51,798 | INFO     | cat /etc/os-release:
[2025-12-03 12:23:21] NAME="CentOS Linux"
[2025-12-03 12:23:21] VERSION="7 (Core)"
[2025-12-03 12:23:21] ID="centos"
[2025-12-03 12:23:21] ID_LIKE="rhel fedora"
[2025-12-03 12:23:21] VERSION_ID="7"
[2025-12-03 12:23:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 12:23:21] ANSI_COLOR="0;31"
[2025-12-03 12:23:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 12:23:21] HOME_URL="https://www.centos.org/"
[2025-12-03 12:23:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 12:23:21] 
[2025-12-03 12:23:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 12:23:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 12:23:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 12:23:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 12:23:21] 
[2025-12-03 12:23:21] 2025-12-03 11:22:51,798 | INFO     | ***************************************
[2025-12-03 12:23:21] 2025-12-03 11:22:52,302 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-03 12:23:21] 2025-12-03 11:22:52,314 | INFO     | sufficient remaining disk space (334763130880 B)
[2025-12-03 12:23:21] 2025-12-03 11:22:52,315 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 12:23:21] 2025-12-03 11:22:52,315 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 12:23:21] 2025-12-03 11:22:52,315 | INFO     | update_server=False
[2025-12-03 12:23:21] 2025-12-03 11:22:52,315 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 12:23:21] 2025-12-03 11:22:52,315 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 12:23:21] 2025-12-03 11:22:52,315 | INFO     | aborting loop
[2025-12-03 12:23:21] 2025-12-03 11:22:52,315 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 12:23:21] 2025-12-03 11:22:52,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 12:23:21] 2025-12-03 11:22:52,607 | INFO     | all payload control threads have been joined
[2025-12-03 12:23:21] 2025-12-03 11:22:52,997 | INFO     | all data control threads have been joined
[2025-12-03 12:23:21] 2025-12-03 11:22:53,311 | INFO     | all job control threads have been joined
[2025-12-03 12:23:21] 2025-12-03 11:22:53,320 | INFO     | [job] job monitor thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:53,321 | INFO     | [job] retrieve thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:53,321 | INFO     | [job] queue monitor thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:53,437 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:53,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 12:23:21] 2025-12-03 11:22:53,613 | INFO     | [payload] control thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:53,965 | INFO     | [payload] validate_post thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:54,003 | INFO     | [data] control thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:54,038 | INFO     | [data] copytool_in thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:54,151 | INFO     | [payload] failed_post thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:54,316 | INFO     | [job] control thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:54,437 | INFO     | [data] copytool_out thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:54,546 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:54,572 | INFO     | [job] validate thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:54,679 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:22:57,585 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:23:03,191 | INFO     | job.realtimelogging is not enabled
[2025-12-03 12:23:21] 2025-12-03 11:23:04,197 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 12:23:21] 2025-12-03 11:23:04,575 | INFO     | [monitor] cgroup control has ended
[2025-12-03 12:23:21] 2025-12-03 11:23:04,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140243679737664)>', '<ExcThread(monitor, started 140242812131072)>']
[2025-12-03 12:23:21] 2025-12-03 11:23:09,826 | INFO     | all workflow threads have been joined
[2025-12-03 12:23:21] 2025-12-03 11:23:09,827 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 12:23:21] 2025-12-03 11:23:09,827 | INFO     | traces error code: 0
[2025-12-03 12:23:21] 2025-12-03 11:23:09,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 12:23:21] 2025-12-03 11:23:21,820 | INFO     | PID=2974871 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 12:23:21] 2025-12-03 11:23:21,820 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 12:23:21] 2025-12-03 11:23:21,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 12:23:21] 2025-12-03 11:23:21,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 12:23:21] 2025-12-03 11:23:21,820 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 12:23:21] 2025-12-03 11:23:21,820 | INFO     | [monitor] control thread has ended
[2025-12-03 12:23:21] 2025-12-03 11:23:21,867 [wrapper] ==== pilot stdout END ====
[2025-12-03 12:23:21] 2025-12-03 11:23:21,869 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 12:23:21] 2025-12-03 11:23:21,871 [wrapper] pilotpid: 2974871
[2025-12-03 12:23:21] 2025-12-03 11:23:21,874 [wrapper] Pilot exit status: 0
[2025-12-03 12:23:21] 2025-12-03 11:23:21,881 [wrapper] pandaids: 6901021159
[2025-12-03 12:23:21] 2025-12-03 11:23:21,896 [wrapper] cleanup supervisor_pilot 3024496 2974872
[2025-12-03 12:23:21] 2025-12-03 11:23:21,899 [wrapper] Test setup, not cleaning
[2025-12-03 12:23:21] 2025-12-03 11:23:21,901 [wrapper] apfmon messages muted
[2025-12-03 12:23:21] 2025-12-03 11:23:21,903 [wrapper] ==== wrapper stdout END ====
[2025-12-03 12:23:21] 2025-12-03 11:23:21,906 [wrapper] ==== wrapper stderr END ====
[2025-12-03 12:23:21]  *** Error codes and diagnostics ***
[2025-12-03 12:23:21]     "exeErrorCode": 0,
[2025-12-03 12:23:21]     "exeErrorDiag": "",
[2025-12-03 12:23:21]     "pilotErrorCode": 0,
[2025-12-03 12:23:21]     "pilotErrorDiag": "",
[2025-12-03 12:23:21]  *** Listing of results directory ***
[2025-12-03 12:23:21] total 1061724
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-03 12:23:21] -rwx------ 1 boinc boinc     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc      5112 Nov 29 10:26 queuedata.json
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc       100 Dec  3 05:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 12:23:21] -rwxr-xr-x 1 boinc boinc      7986 Dec  3 05:40 run_atlas
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc       105 Dec  3 05:40 job.xml
[2025-12-03 12:23:21] -rw-r--r-- 2 boinc boinc 377231908 Dec  3 05:40 EVNT.47531050._000530.pool.root.1
[2025-12-03 12:23:21] -rw-r--r-- 2 boinc boinc    590120 Dec  3 05:40 input.tar.gz
[2025-12-03 12:23:21] -rw-r--r-- 2 boinc boinc     15847 Dec  3 05:40 start_atlas.sh
[2025-12-03 12:23:21] drwxrwx--x 2 boinc boinc      4096 Dec  3 05:40 shared
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc         0 Dec  3 05:40 boinc_setup_complete
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc      6442 Dec  3 05:40 init_data.xml
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc         0 Dec  3 05:40 boinc_lockfile
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc      2880 Dec  3 05:40 pandaJob.out
[2025-12-03 12:23:21] -rw------- 1 boinc boinc    989297 Dec  3 05:40 agis_schedconf.cvmfs.json
[2025-12-03 12:23:21] drwx------ 5 boinc boinc      4096 Dec  3 05:40 pilot3
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc       531 Dec  3 12:19 boinc_task_state.xml
[2025-12-03 12:23:21] -rw------- 1 boinc boinc 696851865 Dec  3 12:22 HITS.47531058._001456.pool.root.1
[2025-12-03 12:23:21] -rw------- 1 boinc boinc        95 Dec  3 12:22 pilot_heartbeat.json
[2025-12-03 12:23:21] -rw------- 1 boinc boinc      1026 Dec  3 12:22 memory_monitor_summary.json
[2025-12-03 12:23:21] -rw------- 1 boinc boinc   1516240 Dec  3 12:22 agis_ddmendpoints.agis.ALL.json
[2025-12-03 12:23:21] -rw------- 1 boinc boinc   1181418 Dec  3 12:22 log.47531058._001456.job.log.tgz.1
[2025-12-03 12:23:21] -rw------- 1 boinc boinc     28244 Dec  3 12:22 heartbeat.json
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc      8192 Dec  3 12:23 boinc_mmap_file
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc        28 Dec  3 12:23 wrapper_checkpoint.txt
[2025-12-03 12:23:21] -rw------- 1 boinc boinc       747 Dec  3 12:23 pilotlog.txt
[2025-12-03 12:23:21] -rw------- 1 boinc boinc   3405864 Dec  3 12:23 log.47531058._001456.job.log.1
[2025-12-03 12:23:21] -rw------- 1 boinc boinc       353 Dec  3 12:23 output.list
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc       620 Dec  3 12:23 runtime_log
[2025-12-03 12:23:21] -rw------- 1 boinc boinc   4628480 Dec  3 12:23 result.tar.gz
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc      8908 Dec  3 12:23 runtime_log.err
[2025-12-03 12:23:21] -rw------- 1 boinc boinc       667 Dec  3 12:23 16NLDm8KWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAAPKDmnVup5n.diag
[2025-12-03 12:23:21] -rw-r--r-- 1 boinc boinc     21253 Dec  3 12:23 stderr.txt
[2025-12-03 12:23:21] HITS file was successfully produced:
[2025-12-03 12:23:21] -rw------- 1 boinc boinc 696851865 Dec  3 12:22 shared/HITS.pool.root.1
[2025-12-03 12:23:21]  *** Contents of shared directory: ***
[2025-12-03 12:23:21] total 1054036
[2025-12-03 12:23:21] -rw-r--r-- 2 boinc boinc 377231908 Dec  3 05:40 ATLAS.root_0
[2025-12-03 12:23:21] -rw-r--r-- 2 boinc boinc    590120 Dec  3 05:40 input.tar.gz
[2025-12-03 12:23:21] -rw-r--r-- 2 boinc boinc     15847 Dec  3 05:40 start_atlas.sh
[2025-12-03 12:23:21] -rw------- 1 boinc boinc 696851865 Dec  3 12:22 HITS.pool.root.1
[2025-12-03 12:23:21] -rw------- 1 boinc boinc   4628480 Dec  3 12:23 result.tar.gz
12:23:23 (2971146): run_atlas exited; CPU time 70972.841985
12:23:23 (2971146): called boinc_finish(0)

</stderr_txt>
]]>

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