Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:19:40 (889238): wrapper (7.7.26015): starting
05:19:40 (889238): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 05:19:40] Arguments: --nthreads 12
[2025-12-01 05:19:40] Threads: 12
[2025-12-01 05:19:40] Checking for CVMFS
[2025-12-01 05:19:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 05:19:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 05:19:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 05:19:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 05:19:41] 2.13.3.0 9777 13769 98780 153505 2 79 3683293 4097024 1044 130560 0 10421282 99.973 734936 15422 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-12-01 05:19:41] CVMFS is ok
[2025-12-01 05:19:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 05:19:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 05:19:41] Further information can be found at the LHC@home message board.
[2025-12-01 05:19:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 05:19:41] Checking for apptainer binary...
[2025-12-01 05:19:41] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-12-01 05:19:41] apptainer is not installed, using version from CVMFS
[2025-12-01 05:19:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 05:19:41] pckelar6.cern.ch
[2025-12-01 05:19:41] apptainer works
[2025-12-01 05:19:41] Set ATHENA_PROC_NUMBER=12
[2025-12-01 05:19:41] Set ATHENA_CORE_NUMBER=12
[2025-12-01 05:19:41] Starting ATLAS job with PandaID=6900801346
[2025-12-01 05:19:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 15:31:59]  *** The last 200 lines of the pilot log: ***
[2025-12-01 15:31:59] 2025-12-01 14:31:10,622 | INFO     | monitor loop #2532: job 0:6900801346 is in state 'finished'
[2025-12-01 15:31:59] 2025-12-01 14:31:10,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 15:31:59] 2025-12-01 14:31:11,913 | INFO     | time since job start (36679s) is within the limit (172800.0s)
[2025-12-01 15:31:59] 2025-12-01 14:31:12,905 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 15:31:59] 2025-12-01 14:31:12,911 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2808.708583333333
[2025-12-01 15:31:59] 2025-12-01 14:31:12,916 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6900801346/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 15:31:59] 2025-12-01 14:31:12,917 | INFO     | extracted standard info from prmon json
[2025-12-01 15:31:59] 2025-12-01 14:31:12,917 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 15:31:59] 2025-12-01 14:31:12,917 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 15:31:59] 2025-12-01 14:31:12,935 | INFO     | fitting pss+swap vs Time
[2025-12-01 15:31:59] 2025-12-01 14:31:12,936 | INFO     | sum of square deviations: 67313118885.67375
[2025-12-01 15:31:59] 2025-12-01 14:31:12,948 | INFO     | sum of deviations: 1150587248849.3035
[2025-12-01 15:31:59] 2025-12-01 14:31:12,948 | INFO     | mean x: 1764581128.9767056
[2025-12-01 15:31:59] 2025-12-01 14:31:12,949 | INFO     | mean y: 4197704.021630616
[2025-12-01 15:31:59] 2025-12-01 14:31:12,949 | INFO     | intersect: -30157895215.919052
[2025-12-01 15:31:59] 2025-12-01 14:31:12,950 | INFO     | chi2: 6.3301520018894015
[2025-12-01 15:31:59] 2025-12-01 14:31:12,951 | INFO     | sum of square deviations: 65647201560.86403
[2025-12-01 15:31:59] 2025-12-01 14:31:12,963 | INFO     | sum of deviations: 1438057813152.2214
[2025-12-01 15:31:59] 2025-12-01 14:31:12,963 | INFO     | mean x: 1764580976.4848993
[2025-12-01 15:31:59] 2025-12-01 14:31:12,963 | INFO     | mean y: 4223998.691275168
[2025-12-01 15:31:59] 2025-12-01 14:31:12,964 | INFO     | intersect: -38650423874.16905
[2025-12-01 15:31:59] 2025-12-01 14:31:12,964 | INFO     | chi2: 3.0829384161735254
[2025-12-01 15:31:59] 2025-12-01 14:31:12,965 | INFO     | current chi2=3.0829384161735254 (change=51.29756101822925 %)
[2025-12-01 15:31:59] 2025-12-01 14:31:12,966 | INFO     | sum of square deviations: 64008969574.95781
[2025-12-01 15:31:59] 2025-12-01 14:31:12,978 | INFO     | sum of deviations: 1470078335185.627
[2025-12-01 15:31:59] 2025-12-01 14:31:12,978 | INFO     | mean x: 1764580823.9915397
[2025-12-01 15:31:59] 2025-12-01 14:31:12,978 | INFO     | mean y: 4226965.324873096
[2025-12-01 15:31:59] 2025-12-01 14:31:12,978 | INFO     | intersect: -40522468859.64341
[2025-12-01 15:31:59] 2025-12-01 14:31:12,979 | INFO     | chi2: 2.925691722713744
[2025-12-01 15:31:59] 2025-12-01 14:31:12,979 | INFO     | current chi2=2.925691722713744 (change=5.100546045125108 %)
[2025-12-01 15:31:59] 2025-12-01 14:31:12,979 | INFO     | right removable region: 590
[2025-12-01 15:31:59] 2025-12-01 14:31:12,980 | INFO     | sum of square deviations: 65646843490.86403
[2025-12-01 15:31:59] 2025-12-01 14:31:12,992 | INFO     | sum of deviations: 867122832772.8329
[2025-12-01 15:31:59] 2025-12-01 14:31:12,993 | INFO     | mean x: 1764581281.4848993
[2025-12-01 15:31:59] 2025-12-01 14:31:12,993 | INFO     | mean y: 4223622.536912751
[2025-12-01 15:31:59] 2025-12-01 14:31:12,993 | INFO     | intersect: -23303960565.66468
[2025-12-01 15:31:59] 2025-12-01 14:31:12,994 | INFO     | chi2: 3.6236179087261027
[2025-12-01 15:31:59] 2025-12-01 14:31:12,994 | INFO     | current chi2=3.6236179087261027 (change=42.75622595406022 %)
[2025-12-01 15:31:59] 2025-12-01 14:31:12,995 | INFO     | sum of square deviations: 64008471330.86299
[2025-12-01 15:31:59] 2025-12-01 14:31:13,007 | INFO     | sum of deviations: 798974601049.1075
[2025-12-01 15:31:59] 2025-12-01 14:31:13,007 | INFO     | mean x: 1764581433.9847715
[2025-12-01 15:31:59] 2025-12-01 14:31:13,007 | INFO     | mean y: 4229962.345177665
[2025-12-01 15:31:59] 2025-12-01 14:31:13,008 | INFO     | intersect: -22021850616.099354
[2025-12-01 15:31:59] 2025-12-01 14:31:13,008 | INFO     | chi2: 3.551582514874838
[2025-12-01 15:31:59] 2025-12-01 14:31:13,009 | INFO     | current chi2=3.551582514874838 (change=1.9879412141604325 %)
[2025-12-01 15:31:59] 2025-12-01 14:31:13,009 | INFO     | left removable region: 20
[2025-12-01 15:31:59] 2025-12-01 14:31:13,010 | INFO     | sum of square deviations: 57425086002.5
[2025-12-01 15:31:59] 2025-12-01 14:31:13,021 | INFO     | sum of deviations: 1033955573539.5002
[2025-12-01 15:31:59] 2025-12-01 14:31:13,021 | INFO     | mean x: 1764581403.5
[2025-12-01 15:31:59] 2025-12-01 14:31:13,021 | INFO     | mean y: 4267911.029824561
[2025-12-01 15:31:59] 2025-12-01 14:31:13,021 | INFO     | intersect: -31767539571.04429
[2025-12-01 15:31:59] 2025-12-01 14:31:13,022 | INFO     | chi2: 0.0912360557110895
[2025-12-01 15:31:59] 2025-12-01 14:31:13,023 | INFO     | current memory leak: 18.01 B/s (using 570 data points, chi2=0.09)
[2025-12-01 15:31:59] 2025-12-01 14:31:13,023 | INFO     | could have reported an average CPU frequency of 2801 MHz (23 samples)
[2025-12-01 15:31:59] 2025-12-01 14:31:13,024 | INFO     | ..............................
[2025-12-01 15:31:59] 2025-12-01 14:31:13,024 | INFO     | . Timing measurements:
[2025-12-01 15:31:59] 2025-12-01 14:31:13,024 | INFO     | . get job = 0 s
[2025-12-01 15:31:59] 2025-12-01 14:31:13,024 | INFO     | . initial setup = 1 s
[2025-12-01 15:31:59] 2025-12-01 14:31:13,024 | INFO     | . payload setup = 13 s
[2025-12-01 15:31:59] 2025-12-01 14:31:13,024 | INFO     | . stage-in = 0 s
[2025-12-01 15:31:59] 2025-12-01 14:31:13,025 | INFO     | . payload execution = 36635 s
[2025-12-01 15:31:59] 2025-12-01 14:31:13,025 | INFO     | . stage-out = 2 s
[2025-12-01 15:31:59] 2025-12-01 14:31:13,025 | INFO     | . log creation = 0 s
[2025-12-01 15:31:59] 2025-12-01 14:31:13,025 | INFO     | ..............................
[2025-12-01 15:31:59] 2025-12-01 14:31:13,254 | INFO     | 
[2025-12-01 15:31:59] 2025-12-01 14:31:13,254 | INFO     | job summary report
[2025-12-01 15:31:59] 2025-12-01 14:31:13,255 | INFO     | --------------------------------------------------
[2025-12-01 15:31:59] 2025-12-01 14:31:13,255 | INFO     | PanDA job id: 6900801346
[2025-12-01 15:31:59] 2025-12-01 14:31:13,255 | INFO     | task id: 47530783
[2025-12-01 15:31:59] 2025-12-01 14:31:13,255 | INFO     | errors: (none)
[2025-12-01 15:31:59] 2025-12-01 14:31:13,255 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 15:31:59] 2025-12-01 14:31:13,255 | INFO     | pilot state: finished 
[2025-12-01 15:31:59] 2025-12-01 14:31:13,256 | INFO     | transexitcode: 0
[2025-12-01 15:31:59] 2025-12-01 14:31:13,256 | INFO     | exeerrorcode: 0
[2025-12-01 15:31:59] 2025-12-01 14:31:13,256 | INFO     | exeerrordiag: 
[2025-12-01 15:31:59] 2025-12-01 14:31:13,256 | INFO     | exitcode: 0
[2025-12-01 15:31:59] 2025-12-01 14:31:13,256 | INFO     | exitmsg: OK
[2025-12-01 15:31:59] 2025-12-01 14:31:13,256 | INFO     | cpuconsumptiontime: 424796 s
[2025-12-01 15:31:59] 2025-12-01 14:31:13,256 | INFO     | nevents: 1000
[2025-12-01 15:31:59] 2025-12-01 14:31:13,257 | INFO     | neventsw: 0
[2025-12-01 15:31:59] 2025-12-01 14:31:13,257 | INFO     | pid: 901356
[2025-12-01 15:31:59] 2025-12-01 14:31:13,257 | INFO     | pgrp: 901356
[2025-12-01 15:31:59] 2025-12-01 14:31:13,257 | INFO     | corecount: 12
[2025-12-01 15:31:59] 2025-12-01 14:31:13,257 | INFO     | event service: False
[2025-12-01 15:31:59] 2025-12-01 14:31:13,257 | INFO     | sizes: {0: 2284222, 1: 2284477, 2: 2284477, 6: 2284767, 12: 2284795, 36652: 2345345, 36656: 2354339, 36658: 2354423, 36664: 2354669}
[2025-12-01 15:31:59] 2025-12-01 14:31:13,258 | INFO     | --------------------------------------------------
[2025-12-01 15:31:59] 2025-12-01 14:31:13,258 | INFO     | 
[2025-12-01 15:31:59] 2025-12-01 14:31:13,258 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-12-01 15:31:59] 2025-12-01 14:31:13,279 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,280 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,280 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,280 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,280 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,280 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,280 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,280 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,281 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,281 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,281 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,281 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,281 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,282 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,282 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,282 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,282 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,282 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 15:31:59] 2025-12-01 14:31:13,282 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,282 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 15:31:59] 2025-12-01 14:31:13,283 | INFO     | job 6900801346 has completed (purged errors)
[2025-12-01 15:31:59] 2025-12-01 14:31:13,283 | INFO     | overall cleanup function is called
[2025-12-01 15:31:59] 2025-12-01 14:31:14,303 | INFO     | --- collectZombieJob: --- 10, [901356]
[2025-12-01 15:31:59] 2025-12-01 14:31:14,303 | INFO     | zombie collector waiting for pid 901356
[2025-12-01 15:31:59] 2025-12-01 14:31:14,303 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 15:31:59] 2025-12-01 14:31:14,303 | INFO     | collected zombie processes
[2025-12-01 15:31:59] 2025-12-01 14:31:14,304 | INFO     | will attempt to kill all subprocesses of pid=901356
[2025-12-01 15:31:59] 2025-12-01 14:31:14,499 | INFO     | process IDs to be killed: [901356] (in reverse order)
[2025-12-01 15:31:59] 2025-12-01 14:31:14,562 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 15:31:59] 2025-12-01 14:31:14,563 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 15:31:59] 2025-12-01 14:31:14,569 | INFO     | did not find any defunct processes belonging to 901356
[2025-12-01 15:31:59] 2025-12-01 14:31:14,575 | INFO     | did not find any defunct processes belonging to 901356
[2025-12-01 15:31:59] 2025-12-01 14:31:14,577 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 15:31:59] 2025-12-01 14:31:14,577 | INFO     | ready for new job
[2025-12-01 15:31:59] 2025-12-01 14:31:14,577 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 15:31:59] 2025-12-01 14:31:14,580 | INFO     | ***************************************
[2025-12-01 15:31:59] 2025-12-01 14:31:14,580 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 15:31:59] 2025-12-01 14:31:14,580 | INFO     | ***************************************
[2025-12-01 15:31:59] 2025-12-01 14:31:14,580 | INFO     | 
[2025-12-01 15:31:59] 2025-12-01 14:31:14,582 | INFO     | architecture information:
[2025-12-01 15:31:59] 2025-12-01 14:31:14,582 | INFO     | executing command: cat /etc/os-release
[2025-12-01 15:31:59] 2025-12-01 14:31:14,598 | INFO     | cat /etc/os-release:
[2025-12-01 15:31:59] NAME="CentOS Linux"
[2025-12-01 15:31:59] VERSION="7 (Core)"
[2025-12-01 15:31:59] ID="centos"
[2025-12-01 15:31:59] ID_LIKE="rhel fedora"
[2025-12-01 15:31:59] VERSION_ID="7"
[2025-12-01 15:31:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 15:31:59] ANSI_COLOR="0;31"
[2025-12-01 15:31:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 15:31:59] HOME_URL="https://www.centos.org/"
[2025-12-01 15:31:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 15:31:59] 
[2025-12-01 15:31:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 15:31:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 15:31:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 15:31:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 15:31:59] 
[2025-12-01 15:31:59] 2025-12-01 14:31:14,598 | INFO     | ***************************************
[2025-12-01 15:31:59] 2025-12-01 14:31:15,101 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-12-01 15:31:59] 2025-12-01 14:31:15,120 | INFO     | sufficient remaining disk space (867954589696 B)
[2025-12-01 15:31:59] 2025-12-01 14:31:15,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 15:31:59] 2025-12-01 14:31:15,121 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 15:31:59] 2025-12-01 14:31:15,121 | INFO     | update_server=False
[2025-12-01 15:31:59] 2025-12-01 14:31:15,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 15:31:59] 2025-12-01 14:31:15,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 15:31:59] 2025-12-01 14:31:15,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 15:31:59] 2025-12-01 14:31:15,122 | INFO     | aborting loop
[2025-12-01 15:31:59] 2025-12-01 14:31:15,659 | INFO     | all data control threads have been joined
[2025-12-01 15:31:59] 2025-12-01 14:31:15,722 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 15:31:59] 2025-12-01 14:31:16,127 | INFO     | [job] retrieve thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:16,128 | INFO     | [job] queue monitor thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:16,129 | INFO     | [job] job monitor thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:16,149 | INFO     | all payload control threads have been joined
[2025-12-01 15:31:59] 2025-12-01 14:31:16,274 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:16,275 | INFO     | [job] validate thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:16,544 | INFO     | [data] copytool_in thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:16,665 | INFO     | [data] control thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:16,759 | INFO     | all job control threads have been joined
[2025-12-01 15:31:59] 2025-12-01 14:31:16,784 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:16,848 | INFO     | [payload] failed_post thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:17,151 | INFO     | [payload] control thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:17,233 | INFO     | [payload] validate_post thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:17,462 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:17,576 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:17,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 15:31:59] 2025-12-01 14:31:17,728 | INFO     | [data] copytool_out thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:17,765 | INFO     | [job] control thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:21,705 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 15:31:59] 2025-12-01 14:31:45,223 | INFO     | PID=893107 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 15:31:59] 2025-12-01 14:31:45,224 | INFO     | .. there are 2 such processes running
[2025-12-01 15:31:59] 2025-12-01 14:31:45,225 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 15:31:59] 2025-12-01 14:31:45,225 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 15:31:59] 2025-12-01 14:31:45,225 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 15:31:59] 2025-12-01 14:31:53,332 | INFO     | [monitor] cgroup control has ended
[2025-12-01 15:31:59] 2025-12-01 14:31:54,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139688530052928)>', '<ExcThread(monitor, started 139687637284608)>']
[2025-12-01 15:31:59] 2025-12-01 14:31:55,266 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 15:31:59] 2025-12-01 14:31:55,266 | INFO     | [monitor] control thread has ended
[2025-12-01 15:31:59] 2025-12-01 14:31:59,697 | INFO     | all workflow threads have been joined
[2025-12-01 15:31:59] 2025-12-01 14:31:59,698 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 15:31:59] 2025-12-01 14:31:59,698 | INFO     | traces error code: 0
[2025-12-01 15:31:59] 2025-12-01 14:31:59,698 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 15:31:59] 2025-12-01 14:31:59,818 [wrapper] ==== pilot stdout END ====
[2025-12-01 15:31:59] 2025-12-01 14:31:59,821 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 15:31:59] 2025-12-01 14:31:59,823 [wrapper] pilotpid: 893107
[2025-12-01 15:31:59] 2025-12-01 14:31:59,825 [wrapper] Pilot exit status: 0
[2025-12-01 15:31:59] 2025-12-01 14:31:59,835 [wrapper] pandaids: 6900801346
[2025-12-01 15:31:59] 2025-12-01 14:31:59,877 [wrapper] cleanup supervisor_pilot 1113276 893108
[2025-12-01 15:31:59] 2025-12-01 14:31:59,880 [wrapper] Test setup, not cleaning
[2025-12-01 15:31:59] 2025-12-01 14:31:59,883 [wrapper] apfmon messages muted
[2025-12-01 15:31:59] 2025-12-01 14:31:59,885 [wrapper] ==== wrapper stdout END ====
[2025-12-01 15:31:59] 2025-12-01 14:31:59,888 [wrapper] ==== wrapper stderr END ====
[2025-12-01 15:31:59]  *** Error codes and diagnostics ***
[2025-12-01 15:31:59]     "exeErrorCode": 0,
[2025-12-01 15:31:59]     "exeErrorDiag": "",
[2025-12-01 15:31:59]     "pilotErrorCode": 0,
[2025-12-01 15:31:59]     "pilotErrorDiag": "",
[2025-12-01 15:31:59]  *** Listing of results directory ***
[2025-12-01 15:31:59] total 1065884
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-01 15:31:59] -rwx------. 1 boinc boinc     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc      5112 Nov 29 10:26 queuedata.json
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc       100 Dec  1 05:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 15:31:59] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 05:19 run_atlas
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc       105 Dec  1 05:19 job.xml
[2025-12-01 15:31:59] -rw-r--r--. 2 boinc boinc 378395404 Dec  1 05:19 EVNT.47530775._000073.pool.root.1
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc      6293 Dec  1 05:19 init_data.xml
[2025-12-01 15:31:59] -rw-r--r--. 2 boinc boinc     15847 Dec  1 05:19 start_atlas.sh
[2025-12-01 15:31:59] drwxrwx--x. 2 boinc boinc        68 Dec  1 05:19 shared
[2025-12-01 15:31:59] -rw-r--r--. 2 boinc boinc    590129 Dec  1 05:19 input.tar.gz
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc         0 Dec  1 05:19 boinc_lockfile
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc      2878 Dec  1 05:19 pandaJob.out
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc    993248 Dec  1 05:19 agis_schedconf.cvmfs.json
[2025-12-01 15:31:59] drwx------. 5 boinc boinc      4096 Dec  1 05:19 pilot3
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc       532 Dec  1 15:22 boinc_task_state.xml
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc 694255683 Dec  1 15:30 HITS.47530783._000725.pool.root.1
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc      1033 Dec  1 15:30 memory_monitor_summary.json
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc   1516240 Dec  1 15:31 agis_ddmendpoints.agis.ALL.json
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc   2422518 Dec  1 15:31 log.47530783._000725.job.log.tgz.1
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc     28271 Dec  1 15:31 heartbeat.json
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc        95 Dec  1 15:31 pilot_heartbeat.json
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc      8192 Dec  1 15:31 boinc_mmap_file
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc        29 Dec  1 15:31 wrapper_checkpoint.txt
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc      4823 Dec  1 15:31 pilotlog.txt
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc   5017155 Dec  1 15:31 log.47530783._000725.job.log.1
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc       353 Dec  1 15:31 output.list
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc       620 Dec  1 15:31 runtime_log
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc   7475200 Dec  1 15:31 result.tar.gz
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc      8842 Dec  1 15:31 runtime_log.err
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc       665 Dec  1 15:31 r4bMDm3KWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoqLKDmZFboRo.diag
[2025-12-01 15:31:59] -rw-r--r--. 1 boinc boinc     21424 Dec  1 15:31 stderr.txt
[2025-12-01 15:31:59] HITS file was successfully produced:
[2025-12-01 15:31:59] -rw-------. 1 boinc boinc 694255683 Dec  1 15:30 shared/HITS.pool.root.1
[2025-12-01 15:31:59]  *** Contents of shared directory: ***
[2025-12-01 15:32:00] total 1055412
[2025-12-01 15:32:00] -rw-r--r--. 2 boinc boinc 378395404 Dec  1 05:19 ATLAS.root_0
[2025-12-01 15:32:00] -rw-r--r--. 2 boinc boinc     15847 Dec  1 05:19 start_atlas.sh
[2025-12-01 15:32:00] -rw-r--r--. 2 boinc boinc    590129 Dec  1 05:19 input.tar.gz
[2025-12-01 15:32:00] -rw-------. 1 boinc boinc 694255683 Dec  1 15:30 HITS.pool.root.1
[2025-12-01 15:32:00] -rw-------. 1 boinc boinc   7475200 Dec  1 15:31 result.tar.gz
15:32:01 (889238): run_atlas exited; CPU time 424688.238012
15:32:01 (889238): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN