Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:21:07 (26185): wrapper (7.7.26015): starting
06:21:07 (26185): wrapper: running run_atlas (--nthreads 12)
[2025-11-30 06:21:07] Arguments: --nthreads 12
[2025-11-30 06:21:07] Threads: 12
[2025-11-30 06:21:07] Checking for CVMFS
[2025-11-30 06:21:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 06:21:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 06:21:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 06:21:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 06:21:07] 2.11.2.0 2981 293328 90324 153479 0 80 19128899 20275201 1 130560 1 133287291 99.969 17023835 14322 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 06:21:07] CVMFS is ok
[2025-11-30 06:21:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 06:21:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 06:21:07] Further information can be found at the LHC@home message board.
[2025-11-30 06:21:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 06:21:07] Checking for apptainer binary...
[2025-11-30 06:21:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 06:21:07] Running /usr/bin/apptainer --version
[2025-11-30 06:21:07] apptainer version 1.3.2-1.el7
[2025-11-30 06:21:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 06:21:09] c-205-30.aglt2.org
[2025-11-30 06:21:09] apptainer works
[2025-11-30 06:21:09] Set ATHENA_PROC_NUMBER=12
[2025-11-30 06:21:09] Set ATHENA_CORE_NUMBER=12
[2025-11-30 06:21:09] Starting ATLAS job with PandaID=6904431514
[2025-11-30 06:21:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 09:35:06]  *** The last 200 lines of the pilot log: ***
[2025-11-30 09:35:06] 2025-11-30 14:34:34,210 | INFO     | monitor loop #854: job 0:6904431514 is in state 'finished'
[2025-11-30 09:35:06] 2025-11-30 14:34:34,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 09:35:06] 2025-11-30 14:34:34,942 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-30 09:35:06] 2025-11-30 14:34:34,946 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-30 09:35:06] 2025-11-30 14:34:34,949 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6904431514/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 09:35:06] 2025-11-30 14:34:34,949 | INFO     | extracted standard info from prmon json
[2025-11-30 09:35:06] 2025-11-30 14:34:34,950 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 09:35:06] 2025-11-30 14:34:34,950 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 09:35:06] 2025-11-30 14:34:34,950 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-30 09:35:06] 2025-11-30 14:34:34,950 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-30 09:35:06] 2025-11-30 14:34:34,953 | INFO     | fitting pss+swap vs Time
[2025-11-30 09:35:06] 2025-11-30 14:34:34,954 | INFO     | sum of square deviations: 2126802667.5
[2025-11-30 09:35:06] 2025-11-30 14:34:34,955 | INFO     | sum of deviations: -3781941928.0
[2025-11-30 09:35:06] 2025-11-30 14:34:34,955 | INFO     | mean x: 1764507477.5
[2025-11-30 09:35:06] 2025-11-30 14:34:34,955 | INFO     | mean y: 2750605.7157894736
[2025-11-30 09:35:06] 2025-11-30 14:34:34,955 | INFO     | intersect: 3140448763.3314238
[2025-11-30 09:35:06] 2025-11-30 14:34:34,955 | INFO     | chi2: 2.641383922793601
[2025-11-30 09:35:06] 2025-11-30 14:34:34,956 | INFO     | sum of square deviations: 1963274020.0
[2025-11-30 09:35:06] 2025-11-30 14:34:34,957 | INFO     | sum of deviations: 10413405038.000027
[2025-11-30 09:35:06] 2025-11-30 14:34:34,957 | INFO     | mean x: 1764507325.0
[2025-11-30 09:35:06] 2025-11-30 14:34:34,957 | INFO     | mean y: 2763567.237837838
[2025-11-30 09:35:06] 2025-11-30 14:34:34,957 | INFO     | intersect: -9356362708.850178
[2025-11-30 09:35:06] 2025-11-30 14:34:34,957 | INFO     | chi2: 1.8682075910779945
[2025-11-30 09:35:06] 2025-11-30 14:34:34,957 | INFO     | current chi2=1.8682075910779945 (change=29.271637683698536 %)
[2025-11-30 09:35:06] 2025-11-30 14:34:34,958 | INFO     | sum of square deviations: 1808350185.0
[2025-11-30 09:35:06] 2025-11-30 14:34:34,959 | INFO     | sum of deviations: 10454744188.999996
[2025-11-30 09:35:06] 2025-11-30 14:34:34,959 | INFO     | mean x: 1764507172.5
[2025-11-30 09:35:06] 2025-11-30 14:34:34,959 | INFO     | mean y: 2763607.966666667
[2025-11-30 09:35:06] 2025-11-30 14:34:34,959 | INFO     | intersect: -10198507838.881548
[2025-11-30 09:35:06] 2025-11-30 14:34:34,959 | INFO     | chi2: 1.8696498742545398
[2025-11-30 09:35:06] 2025-11-30 14:34:34,959 | INFO     | current chi2=1.8696498742545398 (change=-0.07720144075172287 %)
[2025-11-30 09:35:06] 2025-11-30 14:34:34,959 | INFO     | right removable region: 179
[2025-11-30 09:35:06] 2025-11-30 14:34:34,960 | INFO     | sum of square deviations: 1963274020.0
[2025-11-30 09:35:06] 2025-11-30 14:34:34,961 | INFO     | sum of deviations: -38858932662.99999
[2025-11-30 09:35:06] 2025-11-30 14:34:34,961 | INFO     | mean x: 1764507630.0
[2025-11-30 09:35:06] 2025-11-30 14:34:34,961 | INFO     | mean y: 2782985.0486486484
[2025-11-30 09:35:06] 2025-11-30 14:34:34,961 | INFO     | intersect: 34927547678.629074
[2025-11-30 09:35:06] 2025-11-30 14:34:34,961 | INFO     | chi2: 1.0637676770315636
[2025-11-30 09:35:06] 2025-11-30 14:34:34,961 | INFO     | current chi2=1.0637676770315636 (change=59.72688150889881 %)
[2025-11-30 09:35:06] 2025-11-30 14:34:34,962 | INFO     | sum of square deviations: 1808350185.0
[2025-11-30 09:35:06] 2025-11-30 14:34:34,963 | INFO     | sum of deviations: -48857177160.5
[2025-11-30 09:35:06] 2025-11-30 14:34:34,963 | INFO     | mean x: 1764507782.5
[2025-11-30 09:35:06] 2025-11-30 14:34:34,963 | INFO     | mean y: 2792827.9055555556
[2025-11-30 09:35:06] 2025-11-30 14:34:34,963 | INFO     | intersect: 47675456035.38243
[2025-11-30 09:35:06] 2025-11-30 14:34:34,963 | INFO     | chi2: 0.934218596742307
[2025-11-30 09:35:06] 2025-11-30 14:34:34,963 | INFO     | current chi2=0.934218596742307 (change=12.178324561502228 %)
[2025-11-30 09:35:06] 2025-11-30 14:34:34,963 | INFO     | left removable region: 20
[2025-11-30 09:35:06] 2025-11-30 14:34:34,964 | INFO     | sum of square deviations: 1246386160.0
[2025-11-30 09:35:06] 2025-11-30 14:34:34,964 | INFO     | sum of deviations: -25170352103.0
[2025-11-30 09:35:06] 2025-11-30 14:34:34,965 | INFO     | mean x: 1764507752.0
[2025-11-30 09:35:06] 2025-11-30 14:34:34,965 | INFO     | mean y: 2800007.245283019
[2025-11-30 09:35:06] 2025-11-30 14:34:34,965 | INFO     | intersect: 35636444564.332634
[2025-11-30 09:35:06] 2025-11-30 14:34:34,965 | INFO     | chi2: 0.12343046131630557
[2025-11-30 09:35:06] 2025-11-30 14:34:34,965 | INFO     | current memory leak: -20.19 B/s (using 159 data points, chi2=0.12)
[2025-11-30 09:35:06] 2025-11-30 14:34:34,966 | INFO     | could have reported an average CPU frequency of 2279 MHz (10 samples)
[2025-11-30 09:35:06] 2025-11-30 14:34:34,966 | INFO     | ..............................
[2025-11-30 09:35:06] 2025-11-30 14:34:34,966 | INFO     | . Timing measurements:
[2025-11-30 09:35:06] 2025-11-30 14:34:34,966 | INFO     | . get job = 0 s
[2025-11-30 09:35:06] 2025-11-30 14:34:34,966 | INFO     | . initial setup = 2 s
[2025-11-30 09:35:06] 2025-11-30 14:34:34,966 | INFO     | . payload setup = 8 s
[2025-11-30 09:35:06] 2025-11-30 14:34:34,966 | INFO     | . stage-in = 0 s
[2025-11-30 09:35:06] 2025-11-30 14:34:34,966 | INFO     | . payload execution = 11555 s
[2025-11-30 09:35:06] 2025-11-30 14:34:34,966 | INFO     | . stage-out = 2 s
[2025-11-30 09:35:06] 2025-11-30 14:34:34,967 | INFO     | . log creation = 0 s
[2025-11-30 09:35:06] 2025-11-30 14:34:34,967 | INFO     | ..............................
[2025-11-30 09:35:06] 2025-11-30 14:34:35,049 | INFO     | 
[2025-11-30 09:35:06] 2025-11-30 14:34:35,049 | INFO     | job summary report
[2025-11-30 09:35:06] 2025-11-30 14:34:35,049 | INFO     | --------------------------------------------------
[2025-11-30 09:35:06] 2025-11-30 14:34:35,049 | INFO     | PanDA job id: 6904431514
[2025-11-30 09:35:06] 2025-11-30 14:34:35,049 | INFO     | task id: 47523667
[2025-11-30 09:35:06] 2025-11-30 14:34:35,049 | INFO     | errors: (none)
[2025-11-30 09:35:06] 2025-11-30 14:34:35,050 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 09:35:06] 2025-11-30 14:34:35,050 | INFO     | pilot state: finished 
[2025-11-30 09:35:06] 2025-11-30 14:34:35,050 | INFO     | transexitcode: 0
[2025-11-30 09:35:06] 2025-11-30 14:34:35,050 | INFO     | exeerrorcode: 0
[2025-11-30 09:35:06] 2025-11-30 14:34:35,050 | INFO     | exeerrordiag: 
[2025-11-30 09:35:06] 2025-11-30 14:34:35,050 | INFO     | exitcode: 0
[2025-11-30 09:35:06] 2025-11-30 14:34:35,051 | INFO     | exitmsg: OK
[2025-11-30 09:35:06] 2025-11-30 14:34:35,051 | INFO     | cpuconsumptiontime: 129129 s
[2025-11-30 09:35:06] 2025-11-30 14:34:35,051 | INFO     | nevents: 400
[2025-11-30 09:35:06] 2025-11-30 14:34:35,051 | INFO     | neventsw: 0
[2025-11-30 09:35:06] 2025-11-30 14:34:35,051 | INFO     | pid: 3967
[2025-11-30 09:35:06] 2025-11-30 14:34:35,051 | INFO     | pgrp: 3967
[2025-11-30 09:35:06] 2025-11-30 14:34:35,052 | INFO     | corecount: 12
[2025-11-30 09:35:06] 2025-11-30 14:34:35,052 | INFO     | event service: False
[2025-11-30 09:35:06] 2025-11-30 14:34:35,052 | INFO     | sizes: {0: 2283737, 1: 2283936, 5: 2284198, 11: 2284254, 11567: 2313642, 11570: 2322824, 11575: 2322962}
[2025-11-30 09:35:06] 2025-11-30 14:34:35,052 | INFO     | --------------------------------------------------
[2025-11-30 09:35:06] 2025-11-30 14:34:35,052 | INFO     | 
[2025-11-30 09:35:06] 2025-11-30 14:34:35,052 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-30 09:35:06] 2025-11-30 14:34:35,078 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,079 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,079 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,079 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,079 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,079 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,080 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,080 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,080 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,080 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,080 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,080 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,080 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,081 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 09:35:06] 2025-11-30 14:34:35,081 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,081 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 09:35:06] 2025-11-30 14:34:35,081 | INFO     | job 6904431514 has completed (purged errors)
[2025-11-30 09:35:06] 2025-11-30 14:34:35,081 | INFO     | overall cleanup function is called
[2025-11-30 09:35:06] 2025-11-30 14:34:36,089 | INFO     | --- collectZombieJob: --- 10, [3967]
[2025-11-30 09:35:06] 2025-11-30 14:34:36,089 | INFO     | zombie collector waiting for pid 3967
[2025-11-30 09:35:06] 2025-11-30 14:34:36,089 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 09:35:06] 2025-11-30 14:34:36,090 | INFO     | collected zombie processes
[2025-11-30 09:35:06] 2025-11-30 14:34:36,090 | INFO     | will attempt to kill all subprocesses of pid=3967
[2025-11-30 09:35:06] 2025-11-30 14:34:36,183 | INFO     | process IDs to be killed: [3967] (in reverse order)
[2025-11-30 09:35:06] 2025-11-30 14:34:36,234 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 09:35:06] 2025-11-30 14:34:36,235 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 09:35:06] 2025-11-30 14:34:36,238 | INFO     | did not find any defunct processes belonging to 3967
[2025-11-30 09:35:06] 2025-11-30 14:34:36,241 | INFO     | did not find any defunct processes belonging to 3967
[2025-11-30 09:35:06] 2025-11-30 14:34:36,243 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 09:35:06] 2025-11-30 14:34:36,243 | INFO     | ready for new job
[2025-11-30 09:35:06] 2025-11-30 14:34:36,243 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 09:35:06] 2025-11-30 14:34:36,245 | INFO     | ***************************************
[2025-11-30 09:35:06] 2025-11-30 14:34:36,245 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 09:35:06] 2025-11-30 14:34:36,245 | INFO     | ***************************************
[2025-11-30 09:35:06] 2025-11-30 14:34:36,245 | INFO     | 
[2025-11-30 09:35:06] 2025-11-30 14:34:36,246 | INFO     | architecture information:
[2025-11-30 09:35:06] 2025-11-30 14:34:36,246 | INFO     | executing command: cat /etc/os-release
[2025-11-30 09:35:06] 2025-11-30 14:34:36,261 | INFO     | cat /etc/os-release:
[2025-11-30 09:35:06] NAME="CentOS Linux"
[2025-11-30 09:35:06] VERSION="7 (Core)"
[2025-11-30 09:35:06] ID="centos"
[2025-11-30 09:35:06] ID_LIKE="rhel fedora"
[2025-11-30 09:35:06] VERSION_ID="7"
[2025-11-30 09:35:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 09:35:06] ANSI_COLOR="0;31"
[2025-11-30 09:35:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 09:35:06] HOME_URL="https://www.centos.org/"
[2025-11-30 09:35:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 09:35:06] 
[2025-11-30 09:35:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 09:35:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 09:35:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 09:35:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 09:35:06] 
[2025-11-30 09:35:06] 2025-11-30 14:34:36,262 | INFO     | ***************************************
[2025-11-30 09:35:06] 2025-11-30 14:34:36,765 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-30 09:35:06] 2025-11-30 14:34:36,782 | INFO     | sufficient remaining disk space (29060235264 B)
[2025-11-30 09:35:06] 2025-11-30 14:34:36,783 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 09:35:06] 2025-11-30 14:34:36,783 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 09:35:06] 2025-11-30 14:34:36,783 | INFO     | update_server=False
[2025-11-30 09:35:06] 2025-11-30 14:34:36,783 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 09:35:06] 2025-11-30 14:34:36,784 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 09:35:06] 2025-11-30 14:34:36,999 | INFO     | all data control threads have been joined
[2025-11-30 09:35:06] 2025-11-30 14:34:37,184 | INFO     | all payload control threads have been joined
[2025-11-30 09:35:06] 2025-11-30 14:34:37,392 | INFO     | all job control threads have been joined
[2025-11-30 09:35:06] 2025-11-30 14:34:37,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 09:35:06] 2025-11-30 14:34:37,718 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 09:35:06] 2025-11-30 14:34:37,719 | INFO     | aborting loop
[2025-11-30 09:35:06] 2025-11-30 14:34:37,789 | INFO     | [job] retrieve thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:37,789 | INFO     | [job] queue monitor thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:38,004 | INFO     | [data] control thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:38,015 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:38,038 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:38,050 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:38,158 | INFO     | [data] copytool_in thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:38,190 | INFO     | [payload] control thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:38,397 | INFO     | [job] control thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:38,435 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:38,552 | INFO     | [job] validate thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:38,724 | INFO     | [job] job monitor thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:39,216 | INFO     | [payload] failed_post thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:39,375 | INFO     | [payload] validate_post thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:39,436 | INFO     | [data] copytool_out thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:40,011 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 09:35:06] 2025-11-30 14:34:41,915 | INFO     | [monitor] cgroup control has ended
[2025-11-30 09:35:06] 2025-11-30 14:34:44,017 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 09:35:06] 2025-11-30 14:34:44,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140302736308032)>', '<ExcThread(monitor, started 140301540779776)>']
[2025-11-30 09:35:06] 2025-11-30 14:34:49,310 | INFO     | all workflow threads have been joined
[2025-11-30 09:35:06] 2025-11-30 14:34:49,319 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 09:35:06] 2025-11-30 14:34:49,320 | INFO     | traces error code: 0
[2025-11-30 09:35:06] 2025-11-30 14:34:49,320 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 09:35:06] 2025-11-30 14:35:06,531 | INFO     | PID=29866 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 09:35:06] 2025-11-30 14:35:06,532 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 09:35:06] 2025-11-30 14:35:06,532 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 09:35:06] 2025-11-30 14:35:06,532 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 09:35:06] 2025-11-30 14:35:06,532 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 09:35:06] 2025-11-30 14:35:06,532 | INFO     | [monitor] control thread has ended
[2025-11-30 09:35:06] 2025-11-30 14:35:06,624 [wrapper] ==== pilot stdout END ====
[2025-11-30 09:35:06] 2025-11-30 14:35:06,627 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 09:35:06] 2025-11-30 14:35:06,631 [wrapper] pilotpid: 29866
[2025-11-30 09:35:06] 2025-11-30 14:35:06,634 [wrapper] Pilot exit status: 0
[2025-11-30 09:35:06] 2025-11-30 14:35:06,648 [wrapper] pandaids: 6904431514
[2025-11-30 09:35:06] 2025-11-30 14:35:06,688 [wrapper] cleanup supervisor_pilot 26355 29867
[2025-11-30 09:35:06] 2025-11-30 14:35:06,692 [wrapper] Test setup, not cleaning
[2025-11-30 09:35:06] 2025-11-30 14:35:06,696 [wrapper] apfmon messages muted
[2025-11-30 09:35:06] 2025-11-30 14:35:06,699 [wrapper] ==== wrapper stdout END ====
[2025-11-30 09:35:06] 2025-11-30 14:35:06,702 [wrapper] ==== wrapper stderr END ====
[2025-11-30 09:35:06]  *** Error codes and diagnostics ***
[2025-11-30 09:35:06]     "exeErrorCode": 0,
[2025-11-30 09:35:06]     "exeErrorDiag": "",
[2025-11-30 09:35:06]     "pilotErrorCode": 0,
[2025-11-30 09:35:06]     "pilotErrorDiag": "",
[2025-11-30 09:35:06]  *** Listing of results directory ***
[2025-11-30 09:35:06] total 625264
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-11-30 09:35:06] -rwx------ 1 boincer umatlas     36292 Nov 29 04:22 runpilot2-wrapper.sh
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas      5112 Nov 29 04:25 queuedata.json
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas       100 Nov 30 06:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 09:35:06] -rwxr-xr-x 1 boincer umatlas      7986 Nov 30 06:21 run_atlas
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas       105 Nov 30 06:21 job.xml
[2025-11-30 09:35:06] -rw-r--r-- 2 boincer umatlas 295017463 Nov 30 06:21 EVNT.47523665._000006.pool.root.1
[2025-11-30 09:35:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 30 06:21 start_atlas.sh
[2025-11-30 09:35:06] drwxrwx--x 2 boincer umatlas      4096 Nov 30 06:21 shared
[2025-11-30 09:35:06] -rw-r--r-- 2 boincer umatlas    589964 Nov 30 06:21 input.tar.gz
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas         0 Nov 30 06:21 boinc_lockfile
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas      2619 Nov 30 06:21 pandaJob.out
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas        57 Nov 30 06:21 setup.sh.local
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas    991788 Nov 30 06:21 agis_schedconf.cvmfs.json
[2025-11-30 09:35:06] drwx------ 5 boincer umatlas      4096 Nov 30 06:21 pilot3
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas      5955 Nov 30 09:28 init_data.xml
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas 337159598 Nov 30 09:33 HITS.47523667._000233.pool.root.1
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas       531 Nov 30 09:34 boinc_task_state.xml
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas      1057 Nov 30 09:34 memory_monitor_summary.json
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas   1516240 Nov 30 09:34 agis_ddmendpoints.agis.ALL.json
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas    484596 Nov 30 09:34 log.47523667._000233.job.log.tgz.1
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas      7861 Nov 30 09:34 heartbeat.json
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas      8192 Nov 30 09:35 boinc_mmap_file
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas        29 Nov 30 09:35 wrapper_checkpoint.txt
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas       745 Nov 30 09:35 pilotlog.txt
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas        95 Nov 30 09:35 pilot_heartbeat.json
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas   1608202 Nov 30 09:35 log.47523667._000233.job.log.1
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas       357 Nov 30 09:35 output.list
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas       620 Nov 30 09:35 runtime_log
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas   2109440 Nov 30 09:35 result.tar.gz
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas      9345 Nov 30 09:35 runtime_log.err
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas       665 Nov 30 09:35 LrZNDmjKWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmT7OKDm76MQSm.diag
[2025-11-30 09:35:06] -rw-r--r-- 1 boincer umatlas     21186 Nov 30 09:35 stderr.txt
[2025-11-30 09:35:06] HITS file was successfully produced:
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas 337159598 Nov 30 09:33 shared/HITS.pool.root.1
[2025-11-30 09:35:06]  *** Contents of shared directory: ***
[2025-11-30 09:35:06] total 620024
[2025-11-30 09:35:06] -rw-r--r-- 2 boincer umatlas 295017463 Nov 30 06:21 ATLAS.root_0
[2025-11-30 09:35:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 30 06:21 start_atlas.sh
[2025-11-30 09:35:06] -rw-r--r-- 2 boincer umatlas    589964 Nov 30 06:21 input.tar.gz
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas 337159598 Nov 30 09:33 HITS.pool.root.1
[2025-11-30 09:35:06] -rw------- 1 boincer umatlas   2109440 Nov 30 09:35 result.tar.gz
09:35:08 (26185): run_atlas exited; CPU time 129110.204671
09:35:08 (26185): called boinc_finish(0)

</stderr_txt>
]]>

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