Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:51:14 (17180): wrapper (7.7.26015): starting
11:51:14 (17180): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 11:51:14] Arguments: --nthreads 8
[2025-11-30 11:51:14] Threads: 8
[2025-11-30 11:51:14] Checking for CVMFS
[2025-11-30 11:51:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 11:51:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 11:51:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 11:51:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 11:51:18] 2.11.2.0 19741 290859 139496 153477 1 60 13099480 25165824 2504 130560 12 164851294 99.891 83122651 2697 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 11:51:18] CVMFS is ok
[2025-11-30 11:51:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 11:51:18] Checking for apptainer binary...
[2025-11-30 11:51:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 11:51:18] Running /usr/bin/apptainer --version
[2025-11-30 11:51:18] apptainer version 1.3.2-1.el7
[2025-11-30 11:51:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 11:51:27] cg-vwn339.simple-grid.lan
[2025-11-30 11:51:27] apptainer works
[2025-11-30 11:51:27] Set ATHENA_PROC_NUMBER=8
[2025-11-30 11:51:27] Set ATHENA_CORE_NUMBER=8
[2025-11-30 11:51:27] Starting ATLAS job with PandaID=6901294381
[2025-11-30 11:51:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/35 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 08:02:24]  *** The last 200 lines of the pilot log: ***
[2025-12-01 08:02:25] 2025-12-01 07:01:22,087 | INFO     | time since job start (72372s) is within the limit (172800.0s)
[2025-12-01 08:02:25] 2025-12-01 07:01:23,448 | INFO     | monitor loop #4957: job 0:6901294381 is in state 'finished'
[2025-12-01 08:02:25] 2025-12-01 07:01:23,448 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 08:02:25] 2025-12-01 07:01:24,096 | INFO     | time since job start (72374s) is within the limit (172800.0s)
[2025-12-01 08:02:25] 2025-12-01 07:01:25,954 | INFO     | monitor loop #4958: job 0:6901294381 is in state 'finished'
[2025-12-01 08:02:25] 2025-12-01 07:01:25,954 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 08:02:25] 2025-12-01 07:01:26,105 | INFO     | time since job start (72376s) is within the limit (172800.0s)
[2025-12-01 08:02:25] 2025-12-01 07:01:28,115 | INFO     | time since job start (72378s) is within the limit (172800.0s)
[2025-12-01 08:02:25] 2025-12-01 07:01:28,459 | INFO     | monitor loop #4959: job 0:6901294381 is in state 'finished'
[2025-12-01 08:02:25] 2025-12-01 07:01:28,459 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 08:02:25] 2025-12-01 07:01:30,122 | INFO     | time since job start (72380s) is within the limit (172800.0s)
[2025-12-01 08:02:25] 2025-12-01 07:01:30,975 | INFO     | monitor loop #4960: job 0:6901294381 is in state 'finished'
[2025-12-01 08:02:25] 2025-12-01 07:01:30,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 08:02:25] 2025-12-01 07:01:32,129 | INFO     | time since job start (72382s) is within the limit (172800.0s)
[2025-12-01 08:02:25] 2025-12-01 07:01:33,208 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 08:02:25] 2025-12-01 07:01:33,209 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-01 08:02:25] 2025-12-01 07:01:33,211 | INFO     | using path: /var/lib/boinc/slots/35/PanDA_Pilot-6901294381/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 08:02:25] 2025-12-01 07:01:33,212 | INFO     | extracted standard info from prmon json
[2025-12-01 08:02:25] 2025-12-01 07:01:33,212 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 08:02:25] 2025-12-01 07:01:33,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 08:02:25] 2025-12-01 07:01:33,241 | INFO     | fitting pss+swap vs Time
[2025-12-01 08:02:25] 2025-12-01 07:01:33,243 | INFO     | sum of square deviations: 501743361680.22565
[2025-12-01 08:02:25] 2025-12-01 07:01:33,289 | INFO     | sum of deviations: 2875131553977.9854
[2025-12-01 08:02:25] 2025-12-01 07:01:33,289 | INFO     | mean x: 1764536523.552811
[2025-12-01 08:02:25] 2025-12-01 07:01:33,289 | INFO     | mean y: 3310517.3390119253
[2025-12-01 08:02:25] 2025-12-01 07:01:33,289 | INFO     | intersect: -10107983471.731516
[2025-12-01 08:02:25] 2025-12-01 07:01:33,291 | INFO     | chi2: 28.76963047551005
[2025-12-01 08:02:25] 2025-12-01 07:01:33,292 | INFO     | sum of square deviations: 495360298037.1615
[2025-12-01 08:02:25] 2025-12-01 07:01:33,339 | INFO     | sum of deviations: 3346654084753.6543
[2025-12-01 08:02:25] 2025-12-01 07:01:33,339 | INFO     | mean x: 1764536371.057314
[2025-12-01 08:02:25] 2025-12-01 07:01:33,339 | INFO     | mean y: 3321783.3036783575
[2025-12-01 08:02:25] 2025-12-01 07:01:33,339 | INFO     | intersect: -11917885623.294619
[2025-12-01 08:02:25] 2025-12-01 07:01:33,341 | INFO     | chi2: 25.367052329566185
[2025-12-01 08:02:25] 2025-12-01 07:01:33,341 | INFO     | current chi2=25.367052329566185 (change=11.826978969508437 %)
[2025-12-01 08:02:25] 2025-12-01 07:01:33,341 | INFO     | right removable region: 1168
[2025-12-01 08:02:25] 2025-12-01 07:01:33,343 | INFO     | sum of square deviations: 495359544077.1616
[2025-12-01 08:02:25] 2025-12-01 07:01:33,382 | INFO     | sum of deviations: 2283331846682.8003
[2025-12-01 08:02:25] 2025-12-01 07:01:33,383 | INFO     | mean x: 1764536676.057314
[2025-12-01 08:02:25] 2025-12-01 07:01:33,383 | INFO     | mean y: 3324655.017964072
[2025-12-01 08:02:25] 2025-12-01 07:01:33,383 | INFO     | intersect: -8130207514.20149
[2025-12-01 08:02:25] 2025-12-01 07:01:33,385 | INFO     | chi2: 23.58409648980837
[2025-12-01 08:02:25] 2025-12-01 07:01:33,385 | INFO     | current chi2=23.58409648980837 (change=18.024332951081274 %)
[2025-12-01 08:02:25] 2025-12-01 07:01:33,385 | INFO     | left removable region: 10
[2025-12-01 08:02:25] 2025-12-01 07:01:33,387 | INFO     | sum of square deviations: 481507116010.2456
[2025-12-01 08:02:25] 2025-12-01 07:01:33,449 | INFO     | sum of deviations: 2314339885818.2515
[2025-12-01 08:02:25] 2025-12-01 07:01:33,450 | INFO     | mean x: 1764536645.5673575
[2025-12-01 08:02:25] 2025-12-01 07:01:33,450 | INFO     | mean y: 3352031.3877374786
[2025-12-01 08:02:25] 2025-12-01 07:01:33,450 | INFO     | intersect: -8477805158.275861
[2025-12-01 08:02:25] 2025-12-01 07:01:33,452 | INFO     | chi2: 14.872463280236374
[2025-12-01 08:02:25] 2025-12-01 07:01:33,452 | INFO     | current memory leak: 4.81 B/s (using 1158 data points, chi2=14.87)
[2025-12-01 08:02:25] 2025-12-01 07:01:33,453 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-12-01 08:02:25] 2025-12-01 07:01:33,453 | INFO     | ..............................
[2025-12-01 08:02:25] 2025-12-01 07:01:33,454 | INFO     | . Timing measurements:
[2025-12-01 08:02:25] 2025-12-01 07:01:33,454 | INFO     | . get job = 0 s
[2025-12-01 08:02:25] 2025-12-01 07:01:33,454 | INFO     | . initial setup = 8 s
[2025-12-01 08:02:25] 2025-12-01 07:01:33,454 | INFO     | . payload setup = 305 s
[2025-12-01 08:02:25] 2025-12-01 07:01:33,454 | INFO     | . stage-in = 0 s
[2025-12-01 08:02:25] 2025-12-01 07:01:33,454 | INFO     | . payload execution = 71760 s
[2025-12-01 08:02:25] 2025-12-01 07:01:33,454 | INFO     | . stage-out = 4 s
[2025-12-01 08:02:25] 2025-12-01 07:01:33,454 | INFO     | . log creation = 1 s
[2025-12-01 08:02:25] 2025-12-01 07:01:33,454 | INFO     | ..............................
[2025-12-01 08:02:25] 2025-12-01 07:01:33,590 | INFO     | 
[2025-12-01 08:02:25] 2025-12-01 07:01:33,590 | INFO     | job summary report
[2025-12-01 08:02:25] 2025-12-01 07:01:33,590 | INFO     | --------------------------------------------------
[2025-12-01 08:02:25] 2025-12-01 07:01:33,590 | INFO     | PanDA job id: 6901294381
[2025-12-01 08:02:25] 2025-12-01 07:01:33,590 | INFO     | task id: 47531111
[2025-12-01 08:02:25] 2025-12-01 07:01:33,591 | INFO     | errors: (none)
[2025-12-01 08:02:25] 2025-12-01 07:01:33,591 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 08:02:25] 2025-12-01 07:01:33,591 | INFO     | pilot state: finished 
[2025-12-01 08:02:25] 2025-12-01 07:01:33,591 | INFO     | transexitcode: 0
[2025-12-01 08:02:25] 2025-12-01 07:01:33,591 | INFO     | exeerrorcode: 0
[2025-12-01 08:02:25] 2025-12-01 07:01:33,591 | INFO     | exeerrordiag: 
[2025-12-01 08:02:25] 2025-12-01 07:01:33,591 | INFO     | exitcode: 0
[2025-12-01 08:02:25] 2025-12-01 07:01:33,591 | INFO     | exitmsg: OK
[2025-12-01 08:02:25] 2025-12-01 07:01:33,591 | INFO     | cpuconsumptiontime: 265490 s
[2025-12-01 08:02:25] 2025-12-01 07:01:33,591 | INFO     | nevents: 1000
[2025-12-01 08:02:25] 2025-12-01 07:01:33,592 | INFO     | neventsw: 0
[2025-12-01 08:02:25] 2025-12-01 07:01:33,592 | INFO     | pid: 28647
[2025-12-01 08:02:25] 2025-12-01 07:01:33,592 | INFO     | pgrp: 28647
[2025-12-01 08:02:25] 2025-12-01 07:01:33,592 | INFO     | corecount: 8
[2025-12-01 08:02:25] 2025-12-01 07:01:33,592 | INFO     | event service: False
[2025-12-01 08:02:25] 2025-12-01 07:01:33,592 | INFO     | sizes: {0: 2284227, 1: 2284311, 2: 2284482, 12: 2284510, 23: 2284538, 34: 2284566, 44: 2284722, 55: 2284750, 66: 2284778, 77: 2284806, 87: 2284862, 89: 2285432, 98
[2025-12-01 08:02:25] 2025-12-01 07:01:33,592 | INFO     | --------------------------------------------------
[2025-12-01 08:02:25] 2025-12-01 07:01:33,592 | INFO     | 
[2025-12-01 08:02:25] 2025-12-01 07:01:33,592 | INFO     | executing command: ls -lF /var/lib/boinc/slots/35
[2025-12-01 08:02:25] 2025-12-01 07:01:33,783 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,784 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,784 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,784 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,784 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,784 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,784 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,784 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,785 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,785 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,785 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,785 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,785 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,785 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,785 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,785 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,786 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,786 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 08:02:25] 2025-12-01 07:01:33,786 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,786 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 08:02:25] 2025-12-01 07:01:33,786 | INFO     | job 6901294381 has completed (purged errors)
[2025-12-01 08:02:25] 2025-12-01 07:01:33,786 | INFO     | overall cleanup function is called
[2025-12-01 08:02:25] 2025-12-01 07:01:34,808 | INFO     | --- collectZombieJob: --- 10, [28647]
[2025-12-01 08:02:25] 2025-12-01 07:01:34,808 | INFO     | zombie collector waiting for pid 28647
[2025-12-01 08:02:25] 2025-12-01 07:01:34,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 08:02:25] 2025-12-01 07:01:34,808 | INFO     | collected zombie processes
[2025-12-01 08:02:25] 2025-12-01 07:01:34,808 | INFO     | will attempt to kill all subprocesses of pid=28647
[2025-12-01 08:02:25] 2025-12-01 07:01:34,945 | INFO     | process IDs to be killed: [28647] (in reverse order)
[2025-12-01 08:02:25] 2025-12-01 07:01:35,194 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 08:02:25] 2025-12-01 07:01:35,195 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 08:02:25] 2025-12-01 07:01:35,198 | INFO     | did not find any defunct processes belonging to 28647
[2025-12-01 08:02:25] 2025-12-01 07:01:35,201 | INFO     | did not find any defunct processes belonging to 28647
[2025-12-01 08:02:25] 2025-12-01 07:01:35,203 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 08:02:25] 2025-12-01 07:01:35,203 | INFO     | ready for new job
[2025-12-01 08:02:25] 2025-12-01 07:01:35,204 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 08:02:25] 2025-12-01 07:01:35,208 | INFO     | ***************************************
[2025-12-01 08:02:25] 2025-12-01 07:01:35,209 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 08:02:25] 2025-12-01 07:01:35,209 | INFO     | ***************************************
[2025-12-01 08:02:25] 2025-12-01 07:01:35,209 | INFO     | 
[2025-12-01 08:02:25] 2025-12-01 07:01:35,209 | INFO     | pilot is running in a VM
[2025-12-01 08:02:25] 2025-12-01 07:01:35,209 | INFO     | architecture information:
[2025-12-01 08:02:25] 2025-12-01 07:01:35,210 | INFO     | executing command: cat /etc/os-release
[2025-12-01 08:02:25] 2025-12-01 07:01:35,232 | INFO     | cat /etc/os-release:
[2025-12-01 08:02:25] NAME="CentOS Linux"
[2025-12-01 08:02:25] VERSION="7 (Core)"
[2025-12-01 08:02:25] ID="centos"
[2025-12-01 08:02:25] ID_LIKE="rhel fedora"
[2025-12-01 08:02:25] VERSION_ID="7"
[2025-12-01 08:02:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 08:02:25] ANSI_COLOR="0;31"
[2025-12-01 08:02:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 08:02:25] HOME_URL="https://www.centos.org/"
[2025-12-01 08:02:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 08:02:25] 
[2025-12-01 08:02:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 08:02:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 08:02:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 08:02:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 08:02:25] 
[2025-12-01 08:02:25] 2025-12-01 07:01:35,233 | INFO     | ***************************************
[2025-12-01 08:02:25] 2025-12-01 07:01:35,737 | INFO     | executing command: df -mP /var/lib/boinc/slots/35
[2025-12-01 08:02:25] 2025-12-01 07:01:35,902 | INFO     | sufficient remaining disk space (489010757632 B)
[2025-12-01 08:02:25] 2025-12-01 07:01:35,902 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 08:02:25] 2025-12-01 07:01:35,902 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 08:02:25] 2025-12-01 07:01:35,902 | INFO     | update_server=False
[2025-12-01 08:02:25] 2025-12-01 07:01:35,902 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 08:02:25] 2025-12-01 07:01:35,986 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-01 08:02:25] 2025-12-01 07:01:35,986 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-01 08:02:25] 2025-12-01 07:01:35,986 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 08:02:25] 2025-12-01 07:01:35,986 | INFO     | will abort loop
[2025-12-01 08:02:25] 2025-12-01 07:01:36,291 | INFO     | all payload control threads have been joined
[2025-12-01 08:02:25] 2025-12-01 07:01:36,582 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 08:02:25] 2025-12-01 07:01:36,835 | INFO     | all data control threads have been joined
[2025-12-01 08:02:25] 2025-12-01 07:01:36,908 | INFO     | [job] retrieve thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:36,921 | INFO     | [job] validate thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:36,992 | INFO     | [job] job monitor thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:37,296 | INFO     | [payload] control thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:37,420 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:37,478 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 08:02:25] 2025-12-01 07:01:37,539 | INFO     | all job control threads have been joined
[2025-12-01 08:02:25] 2025-12-01 07:01:37,614 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:37,651 | INFO     | [payload] validate_post thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:37,841 | INFO     | [data] control thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:38,037 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:38,125 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:38,344 | INFO     | [data] copytool_in thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:38,422 | INFO     | [payload] failed_post thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:38,545 | INFO     | [job] control thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:38,589 | INFO     | [data] copytool_out thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:38,604 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 08:02:25] 2025-12-01 07:01:39,610 | INFO     | [job] queue monitor thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:01:41,487 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 08:02:25] 2025-12-01 07:02:05,351 | INFO     | PID=21309 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 08:02:25] 2025-12-01 07:02:05,352 | INFO     | .. there are 9 such processes running
[2025-12-01 08:02:25] 2025-12-01 07:02:05,352 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 08:02:25] 2025-12-01 07:02:05,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 08:02:25] 2025-12-01 07:02:05,353 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 08:02:25] 2025-12-01 07:02:15,566 | INFO     | [monitor] cgroup control has ended
[2025-12-01 08:02:25] 2025-12-01 07:02:16,416 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145375217472)>', '<ExcThread(monitor, started 140145076446976)>']
[2025-12-01 08:02:25] 2025-12-01 07:02:16,417 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 08:02:25] 2025-12-01 07:02:16,417 | INFO     | [monitor] control thread has ended
[2025-12-01 08:02:25] 2025-12-01 07:02:21,442 | INFO     | all workflow threads have been joined
[2025-12-01 08:02:25] 2025-12-01 07:02:21,442 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 08:02:25] 2025-12-01 07:02:21,442 | INFO     | traces error code: 0
[2025-12-01 08:02:25] 2025-12-01 07:02:21,443 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 08:02:25] 2025-12-01 07:02:21,755 [wrapper] ==== pilot stdout END ====
[2025-12-01 08:02:25] 2025-12-01 07:02:21,842 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 08:02:25] 2025-12-01 07:02:21,895 [wrapper] pilotpid: 21309
[2025-12-01 08:02:25] 2025-12-01 07:02:21,945 [wrapper] Pilot exit status: 0
[2025-12-01 08:02:25] 2025-12-01 07:02:22,310 [wrapper] pandaids: 6901294381
[2025-12-01 08:02:25] 2025-12-01 07:02:23,049 [wrapper] cleanup supervisor_pilot 13729 21310
[2025-12-01 08:02:25] 2025-12-01 07:02:23,125 [wrapper] Test setup, not cleaning
[2025-12-01 08:02:25] 2025-12-01 07:02:23,173 [wrapper] apfmon messages muted
[2025-12-01 08:02:25] 2025-12-01 07:02:23,213 [wrapper] ==== wrapper stdout END ====
[2025-12-01 08:02:25] 2025-12-01 07:02:23,252 [wrapper] ==== wrapper stderr END ====
[2025-12-01 08:02:25]  *** Error codes and diagnostics ***
[2025-12-01 08:02:25]     "exeErrorCode": 0,
[2025-12-01 08:02:25]     "exeErrorDiag": "",
[2025-12-01 08:02:25]     "pilotErrorCode": 0,
[2025-12-01 08:02:25]     "pilotErrorDiag": "",
[2025-12-01 08:02:25]  *** Listing of results directory ***
[2025-12-01 08:02:25] total 1070604
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-01 08:02:25] -rwx------. 1 boinc boinc     36292 Nov 29 10:20 runpilot2-wrapper.sh
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc      5112 Nov 29 10:22 queuedata.json
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc       100 Nov 30 11:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 08:02:25] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 11:51 run_atlas
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc       105 Nov 30 11:51 job.xml
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc      6383 Nov 30 11:51 init_data.xml
[2025-12-01 08:02:25] -rw-r--r--. 2 boinc boinc 376358188 Nov 30 11:51 EVNT.47531104._000105.pool.root.1
[2025-12-01 08:02:25] -rw-r--r--. 2 boinc boinc     15847 Nov 30 11:51 start_atlas.sh
[2025-12-01 08:02:25] drwxrwx--x. 2 boinc boinc        68 Nov 30 11:51 shared
[2025-12-01 08:02:25] -rw-r--r--. 2 boinc boinc    590115 Nov 30 11:51 input.tar.gz
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc         0 Nov 30 11:51 boinc_lockfile
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc      2880 Nov 30 11:51 pandaJob.out
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc    991788 Nov 30 11:55 agis_schedconf.cvmfs.json
[2025-12-01 08:02:25] drwx------. 5 boinc boinc      4096 Nov 30 11:55 pilot3
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc       533 Dec  1 07:37 boinc_task_state.xml
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc 691768408 Dec  1 07:58 HITS.47531111._001032.pool.root.1
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc      1034 Dec  1 07:59 memory_monitor_summary.json
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc   1516240 Dec  1 07:59 agis_ddmendpoints.agis.ALL.json
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc   2420693 Dec  1 07:59 log.47531111._001032.job.log.tgz.1
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc     27581 Dec  1 08:01 heartbeat.json
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc        95 Dec  1 08:02 pilot_heartbeat.json
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc      8192 Dec  1 08:02 boinc_mmap_file
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc        29 Dec  1 08:02 wrapper_checkpoint.txt
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc      5071 Dec  1 08:02 pilotlog.txt
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc   9696902 Dec  1 08:02 log.47531111._001032.job.log.1
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc       353 Dec  1 08:02 output.list
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc       620 Dec  1 08:02 runtime_log
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc  12154880 Dec  1 08:02 result.tar.gz
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc      8833 Dec  1 08:02 runtime_log.err
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc       661 Dec  1 08:02 c6RLDmkIWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6mLKDmijrETm.diag
[2025-12-01 08:02:25] -rw-r--r--. 1 boinc boinc     21421 Dec  1 08:02 stderr.txt
[2025-12-01 08:02:25] HITS file was successfully produced:
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc 691768408 Dec  1 07:58 shared/HITS.pool.root.1
[2025-12-01 08:02:25]  *** Contents of shared directory: ***
[2025-12-01 08:02:25] total 1055564
[2025-12-01 08:02:25] -rw-r--r--. 2 boinc boinc 376358188 Nov 30 11:51 ATLAS.root_0
[2025-12-01 08:02:25] -rw-r--r--. 2 boinc boinc     15847 Nov 30 11:51 start_atlas.sh
[2025-12-01 08:02:25] -rw-r--r--. 2 boinc boinc    590115 Nov 30 11:51 input.tar.gz
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc 691768408 Dec  1 07:58 HITS.pool.root.1
[2025-12-01 08:02:25] -rw-------. 1 boinc boinc  12154880 Dec  1 08:02 result.tar.gz
08:02:26 (17180): run_atlas exited; CPU time 265890.715970
08:02:26 (17180): called boinc_finish(0)

</stderr_txt>
]]>

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