Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
17:25:07 (3387790): wrapper (7.7.26015): starting
17:25:07 (3387790): wrapper: running run_atlas (--nthreads 12)
[2025-11-30 17:25:07] Arguments: --nthreads 12
[2025-11-30 17:25:07] Threads: 12
[2025-11-30 17:25:07] Checking for CVMFS
[2025-11-30 17:25:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 17:25:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 17:25:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 17:25:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 17:25:07] 2.13.0.0 498242 16754 43540 153489 3 81 74204499 82903041 1302 130560 29 7669217 99.964 746261 315 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-30 17:25:07] CVMFS is ok
[2025-11-30 17:25:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 17:25:07] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-30 17:25:07] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-30 17:25:07] Further information can be found at the LHC@home message board.
[2025-11-30 17:25:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 17:25:07] Checking for apptainer binary...
[2025-11-30 17:25:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 17:25:07] Running /usr/bin/apptainer --version
[2025-11-30 17:25:07] apptainer version 1.4.4
[2025-11-30 17:25:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 17:25:07] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) torr
[2025-11-30 17:25:07] apptainer works
[2025-11-30 17:25:07] Set ATHENA_PROC_NUMBER=12
[2025-11-30 17:25:07] Set ATHENA_CORE_NUMBER=12
[2025-11-30 17:25:07] Starting ATLAS job with PandaID=6896262569
[2025-11-30 17:25:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 20:25:38]  *** The last 200 lines of the pilot log: ***
[2025-11-30 20:25:38] 2025-11-30 20:25:04,949 | INFO     | executing command: lscpu
[2025-11-30 20:25:38] 2025-11-30 20:25:04,965 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-30 20:25:38] 2025-11-30 20:25:05,472 | INFO     | time since job start (10794s) is within the limit (172800.0s)
[2025-11-30 20:25:38] 2025-11-30 20:25:06,826 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 20:25:38] 2025-11-30 20:25:06,827 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 2782.2856666666667
[2025-11-30 20:25:38] 2025-11-30 20:25:06,827 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6896262569/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 20:25:38] 2025-11-30 20:25:06,828 | INFO     | extracted standard info from prmon json
[2025-11-30 20:25:38] 2025-11-30 20:25:06,828 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 20:25:38] 2025-11-30 20:25:06,828 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 20:25:38] 2025-11-30 20:25:06,829 | INFO     | fitting pss+swap vs Time
[2025-11-30 20:25:38] 2025-11-30 20:25:06,829 | INFO     | sum of square deviations: 1719352993.977398
[2025-11-30 20:25:38] 2025-11-30 20:25:06,829 | INFO     | sum of deviations: 266973448661.24854
[2025-11-30 20:25:38] 2025-11-30 20:25:06,829 | INFO     | mean x: 1764528896.6553671
[2025-11-30 20:25:38] 2025-11-30 20:25:06,829 | INFO     | mean y: 4316358.790960452
[2025-11-30 20:25:38] 2025-11-30 20:25:06,829 | INFO     | intersect: -273983844567.22763
[2025-11-30 20:25:38] 2025-11-30 20:25:06,829 | INFO     | chi2: 9.266544170539207
[2025-11-30 20:25:38] 2025-11-30 20:25:06,829 | INFO     | sum of square deviations: 1577748506.7674408
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | sum of deviations: 203126523083.89532
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | mean x: 1764528744.1744187
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | mean y: 4245702.703488372
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | intersect: -227169215180.54816
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | chi2: 4.968301713691135
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | current chi2=4.968301713691135 (change=46.3845245621698 %)
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | sum of square deviations: 1444144169.4251492
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | sum of deviations: 94320398496.94606
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | mean x: 1764528591.6946108
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | mean y: 4122050.9401197606
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | intersect: -115241324665.18633
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | chi2: 1.6851758900486207
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | current chi2=1.6851758900486207 (change=66.0814502185971 %)
[2025-11-30 20:25:38] 2025-11-30 20:25:06,830 | INFO     | sum of square deviations: 1318276981.679012
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | sum of deviations: 84965861346.85188
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | mean x: 1764528439.1975307
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | mean y: 4110821.1296296297
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | intersect: -113723641988.81787
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | chi2: 1.6622339591932713
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | current chi2=1.6622339591932713 (change=1.3613968126904206 %)
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | right removable region: 161
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | sum of square deviations: 1577709772.7616236
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | sum of deviations: 212297048364.50574
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | mean x: 1764529049.1569767
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | mean y: 4374597.203488372
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | intersect: -237431125490.8428
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | chi2: 7.830942002588284
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | current chi2=7.830942002588284 (change=15.492314519096368 %)
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | left removable region: 10
[2025-11-30 20:25:38] 2025-11-30 20:25:06,831 | INFO     | sum of square deviations: 1067541267.5894041
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | sum of deviations: 32151354637.940384
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | mean x: 1764528713.7019868
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | mean y: 4176687.1986754965
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | intersect: -53138488767.94278
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | chi2: 0.019070293663727266
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | current memory leak: 30.12 B/s (using 151 data points, chi2=0.02)
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | could have reported an average CPU frequency of 3420 MHz (9 samples)
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | ..............................
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | . Timing measurements:
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | . get job = 0 s
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | . initial setup = 1 s
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | . payload setup = 2 s
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | . stage-in = 0 s
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | . payload execution = 10771 s
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | . stage-out = 0 s
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | . log creation = 0 s
[2025-11-30 20:25:38] 2025-11-30 20:25:06,832 | INFO     | ..............................
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | 
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | job summary report
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | --------------------------------------------------
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | PanDA job id: 6896262569
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | task id: 47531058
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | errors: (none)
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | pilot state: finished 
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | transexitcode: 0
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | exeerrorcode: 0
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | exeerrordiag: 
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | exitcode: 0
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | exitmsg: OK
[2025-11-30 20:25:38] 2025-11-30 20:25:06,950 | INFO     | cpuconsumptiontime: 105681 s
[2025-11-30 20:25:38] 2025-11-30 20:25:06,951 | INFO     | nevents: 1000
[2025-11-30 20:25:38] 2025-11-30 20:25:06,951 | INFO     | neventsw: 0
[2025-11-30 20:25:38] 2025-11-30 20:25:06,951 | INFO     | pid: 3398728
[2025-11-30 20:25:38] 2025-11-30 20:25:06,951 | INFO     | pgrp: 3398728
[2025-11-30 20:25:38] 2025-11-30 20:25:06,951 | INFO     | corecount: 12
[2025-11-30 20:25:38] 2025-11-30 20:25:06,951 | INFO     | event service: False
[2025-11-30 20:25:38] 2025-11-30 20:25:06,951 | INFO     | sizes: {0: 2284456, 1: 2284718, 11: 2284746, 10778: 2343775, 10779: 2343775, 10783: 2344085}
[2025-11-30 20:25:38] 2025-11-30 20:25:06,951 | INFO     | --------------------------------------------------
[2025-11-30 20:25:38] 2025-11-30 20:25:06,951 | INFO     | 
[2025-11-30 20:25:38] 2025-11-30 20:25:06,951 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-11-30 20:25:38] 2025-11-30 20:25:06,957 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,957 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,957 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,957 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,957 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | job 6896262569 has completed (purged errors)
[2025-11-30 20:25:38] 2025-11-30 20:25:06,958 | INFO     | overall cleanup function is called
[2025-11-30 20:25:38] 2025-11-30 20:25:07,966 | INFO     | --- collectZombieJob: --- 10, [3398728]
[2025-11-30 20:25:38] 2025-11-30 20:25:07,966 | INFO     | zombie collector waiting for pid 3398728
[2025-11-30 20:25:38] 2025-11-30 20:25:07,966 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 20:25:38] 2025-11-30 20:25:07,966 | INFO     | collected zombie processes
[2025-11-30 20:25:38] 2025-11-30 20:25:07,966 | INFO     | will attempt to kill all subprocesses of pid=3398728
[2025-11-30 20:25:38] 2025-11-30 20:25:07,996 | INFO     | process IDs to be killed: [3398728] (in reverse order)
[2025-11-30 20:25:38] 2025-11-30 20:25:08,011 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 20:25:38] 2025-11-30 20:25:08,011 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 20:25:38] 2025-11-30 20:25:08,013 | INFO     | did not find any defunct processes belonging to 3398728
[2025-11-30 20:25:38] 2025-11-30 20:25:08,014 | INFO     | did not find any defunct processes belonging to 3398728
[2025-11-30 20:25:38] 2025-11-30 20:25:08,014 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 20:25:38] 2025-11-30 20:25:08,014 | INFO     | ready for new job
[2025-11-30 20:25:38] 2025-11-30 20:25:08,014 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 20:25:38] 2025-11-30 20:25:08,015 | INFO     | ***************************************
[2025-11-30 20:25:38] 2025-11-30 20:25:08,015 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 20:25:38] 2025-11-30 20:25:08,015 | INFO     | ***************************************
[2025-11-30 20:25:38] 2025-11-30 20:25:08,015 | INFO     | 
[2025-11-30 20:25:38] 2025-11-30 20:25:08,015 | INFO     | architecture information:
[2025-11-30 20:25:38] 2025-11-30 20:25:08,015 | INFO     | executing command: cat /etc/os-release
[2025-11-30 20:25:38] 2025-11-30 20:25:08,019 | INFO     | cat /etc/os-release:
[2025-11-30 20:25:38] NAME="CentOS Linux"
[2025-11-30 20:25:38] VERSION="7 (Core)"
[2025-11-30 20:25:38] ID="centos"
[2025-11-30 20:25:38] ID_LIKE="rhel fedora"
[2025-11-30 20:25:38] VERSION_ID="7"
[2025-11-30 20:25:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 20:25:38] ANSI_COLOR="0;31"
[2025-11-30 20:25:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 20:25:38] HOME_URL="https://www.centos.org/"
[2025-11-30 20:25:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 20:25:38] 
[2025-11-30 20:25:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 20:25:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 20:25:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 20:25:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 20:25:38] 
[2025-11-30 20:25:38] 2025-11-30 20:25:08,019 | INFO     | ***************************************
[2025-11-30 20:25:38] 2025-11-30 20:25:08,521 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-11-30 20:25:38] 2025-11-30 20:25:08,527 | INFO     | sufficient remaining disk space (332954337280 B)
[2025-11-30 20:25:38] 2025-11-30 20:25:08,527 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 20:25:38] 2025-11-30 20:25:08,527 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 20:25:38] 2025-11-30 20:25:08,527 | INFO     | update_server=False
[2025-11-30 20:25:38] 2025-11-30 20:25:08,527 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 20:25:38] 2025-11-30 20:25:08,527 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 20:25:38] 2025-11-30 20:25:08,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 20:25:38] 2025-11-30 20:25:08,527 | INFO     | aborting loop
[2025-11-30 20:25:38] 2025-11-30 20:25:08,744 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 20:25:38] 2025-11-30 20:25:08,973 | INFO     | all job control threads have been joined
[2025-11-30 20:25:38] 2025-11-30 20:25:08,975 | INFO     | all data control threads have been joined
[2025-11-30 20:25:38] 2025-11-30 20:25:09,262 | INFO     | all payload control threads have been joined
[2025-11-30 20:25:38] 2025-11-30 20:25:09,531 | INFO     | [job] retrieve thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:09,532 | INFO     | [job] job monitor thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:09,532 | INFO     | [job] queue monitor thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:09,575 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:09,772 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 20:25:38] 2025-11-30 20:25:09,784 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:09,978 | INFO     | [job] control thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:09,979 | INFO     | [data] control thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:10,022 | INFO     | [payload] validate_post thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:10,094 [wrapper] supervise_pilot (15 min periods counter: 13)
[2025-11-30 20:25:38] 2025-11-30 20:25:10,267 | INFO     | [payload] control thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:10,461 | INFO     | [payload] failed_post thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:10,955 | INFO     | [data] copytool_in thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:10,964 | INFO     | [job] validate thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:10,972 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:10,992 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:11,777 | INFO     | [data] copytool_out thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:12,749 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 20:25:38] 2025-11-30 20:25:28,903 | INFO     | [monitor] cgroup control has ended
[2025-11-30 20:25:38] 2025-11-30 20:25:30,262 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139845903664960)>', '<ExcThread(monitor, started 139845141788416)>']
[2025-11-30 20:25:38] 2025-11-30 20:25:35,295 | INFO     | all workflow threads have been joined
[2025-11-30 20:25:38] 2025-11-30 20:25:35,295 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 20:25:38] 2025-11-30 20:25:35,304 | INFO     | traces error code: 0
[2025-11-30 20:25:38] 2025-11-30 20:25:35,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 20:25:38] 2025-11-30 20:25:38,553 | INFO     | PID=3391519 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 20:25:38] 2025-11-30 20:25:38,553 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 20:25:38] 2025-11-30 20:25:38,553 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 20:25:38] 2025-11-30 20:25:38,553 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 20:25:38] 2025-11-30 20:25:38,553 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 20:25:38] 2025-11-30 20:25:38,553 | INFO     | [monitor] control thread has ended
[2025-11-30 20:25:38] 2025-11-30 20:25:38,607 [wrapper] ==== pilot stdout END ====
[2025-11-30 20:25:38] 2025-11-30 20:25:38,608 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 20:25:38] 2025-11-30 20:25:38,609 [wrapper] pilotpid: 3391519
[2025-11-30 20:25:38] 2025-11-30 20:25:38,609 [wrapper] Pilot exit status: 0
[2025-11-30 20:25:38] 2025-11-30 20:25:38,613 [wrapper] pandaids: 6896262569
[2025-11-30 20:25:38] 2025-11-30 20:25:38,622 [wrapper] cleanup supervisor_pilot 3477930 3391520
[2025-11-30 20:25:38] 2025-11-30 20:25:38,623 [wrapper] Test setup, not cleaning
[2025-11-30 20:25:38] 2025-11-30 20:25:38,624 [wrapper] apfmon messages muted
[2025-11-30 20:25:38] 2025-11-30 20:25:38,625 [wrapper] ==== wrapper stdout END ====
[2025-11-30 20:25:38] 2025-11-30 20:25:38,626 [wrapper] ==== wrapper stderr END ====
[2025-11-30 20:25:38]  *** Error codes and diagnostics ***
[2025-11-30 20:25:38]     "exeErrorCode": 0,
[2025-11-30 20:25:38]     "exeErrorDiag": "",
[2025-11-30 20:25:38]     "pilotErrorCode": 0,
[2025-11-30 20:25:38]     "pilotErrorDiag": "",
[2025-11-30 20:25:38]  *** Listing of results directory ***
[2025-11-30 20:25:38] total 1070352
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc    576529 Nov 28 10:28 pilot3.tar.gz
[2025-11-30 20:25:38] -rwx------ 1 boinc boinc     36292 Nov 28 10:28 runpilot2-wrapper.sh
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc      5112 Nov 28 10:30 queuedata.json
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc       100 Nov 30 17:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 20:25:38] -rwxr-xr-x 1 boinc boinc      7986 Nov 30 17:25 run_atlas
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc       105 Nov 30 17:25 job.xml
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc      9907 Nov 30 17:25 init_data.xml
[2025-11-30 20:25:38] -rw-r--r-- 2 boinc boinc 377444384 Nov 30 17:25 EVNT.47531050._000424.pool.root.1
[2025-11-30 20:25:38] -rw-r--r-- 2 boinc boinc     15847 Nov 30 17:25 start_atlas.sh
[2025-11-30 20:25:38] drwxrwx--x 2 boinc boinc      4096 Nov 30 17:25 shared
[2025-11-30 20:25:38] -rw-r--r-- 2 boinc boinc    590122 Nov 30 17:25 input.tar.gz
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc         0 Nov 30 17:25 boinc_lockfile
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc      2878 Nov 30 17:25 pandaJob.out
[2025-11-30 20:25:38] -rw------- 1 boinc boinc    993063 Nov 30 17:25 agis_schedconf.cvmfs.json
[2025-11-30 20:25:38] -rw------- 1 boinc boinc   1516240 Nov 30 17:25 agis_ddmendpoints.agis.ALL.json
[2025-11-30 20:25:38] drwx------ 5 boinc boinc      4096 Nov 30 17:25 pilot3
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc       532 Nov 30 20:22 boinc_task_state.xml
[2025-11-30 20:25:38] -rw------- 1 boinc boinc        95 Nov 30 20:24 pilot_heartbeat.json
[2025-11-30 20:25:38] -rw------- 1 boinc boinc 707461308 Nov 30 20:24 HITS.47531058._000403.pool.root.1
[2025-11-30 20:25:38] -rw------- 1 boinc boinc      1069 Nov 30 20:24 memory_monitor_summary.json
[2025-11-30 20:25:38] -rw------- 1 boinc boinc   2033040 Nov 30 20:25 log.47531058._000403.job.log.tgz.1
[2025-11-30 20:25:38] -rw------- 1 boinc boinc     28758 Nov 30 20:25 heartbeat.json
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc      8192 Nov 30 20:25 boinc_mmap_file
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc        29 Nov 30 20:25 wrapper_checkpoint.txt
[2025-11-30 20:25:38] -rw------- 1 boinc boinc       747 Nov 30 20:25 pilotlog.txt
[2025-11-30 20:25:38] -rw------- 1 boinc boinc   1555535 Nov 30 20:25 log.47531058._000403.job.log.1
[2025-11-30 20:25:38] -rw------- 1 boinc boinc       353 Nov 30 20:25 output.list
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc       620 Nov 30 20:25 runtime_log
[2025-11-30 20:25:38] -rw------- 1 boinc boinc   3624960 Nov 30 20:25 result.tar.gz
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc      9048 Nov 30 20:25 runtime_log.err
[2025-11-30 20:25:38] -rw------- 1 boinc boinc       661 Nov 30 20:25 r5YNDmUtAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7CLKDmXqAsXn.diag
[2025-11-30 20:25:38] -rw-r--r-- 1 boinc boinc     21596 Nov 30 20:25 stderr.txt
[2025-11-30 20:25:38] HITS file was successfully produced:
[2025-11-30 20:25:38] -rw------- 1 boinc boinc 707461308 Nov 30 20:24 shared/HITS.pool.root.1
[2025-11-30 20:25:38]  *** Contents of shared directory: ***
[2025-11-30 20:25:38] total 1063628
[2025-11-30 20:25:38] -rw-r--r-- 2 boinc boinc 377444384 Nov 30 17:25 ATLAS.root_0
[2025-11-30 20:25:38] -rw-r--r-- 2 boinc boinc     15847 Nov 30 17:25 start_atlas.sh
[2025-11-30 20:25:38] -rw-r--r-- 2 boinc boinc    590122 Nov 30 17:25 input.tar.gz
[2025-11-30 20:25:38] -rw------- 1 boinc boinc 707461308 Nov 30 20:24 HITS.pool.root.1
[2025-11-30 20:25:38] -rw------- 1 boinc boinc   3624960 Nov 30 20:25 result.tar.gz
20:25:40 (3387790): run_atlas exited; CPU time 105124.363922
20:25:40 (3387790): called boinc_finish(0)

</stderr_txt>
]]>

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