Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:58:42 (16362): wrapper (7.7.26015): starting
05:58:42 (16362): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 05:58:42] Arguments: --nthreads 8
[2025-12-02 05:58:42] Threads: 8
[2025-12-02 05:58:42] Checking for CVMFS
[2025-12-02 05:58:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 05:58:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 05:58:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 05:58:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 05:58:44] 2.11.2.0 3740 293544 139932 153544 0 85 18977373 25165825 2504 130560 10 135542286 99.873 81826164 2790 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 05:58:44] CVMFS is ok
[2025-12-02 05:58:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 05:58:44] Checking for apptainer binary...
[2025-12-02 05:58:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 05:58:44] Running /usr/bin/apptainer --version
[2025-12-02 05:58:45] apptainer version 1.3.2-1.el7
[2025-12-02 05:58:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 05:58:51] cg-vwn234.simple-grid.lan
[2025-12-02 05:58:51] apptainer works
[2025-12-02 05:58:51] Set ATHENA_PROC_NUMBER=8
[2025-12-02 05:58:51] Set ATHENA_CORE_NUMBER=8
[2025-12-02 05:58:51] Starting ATLAS job with PandaID=6896262571
[2025-12-02 05:58:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 02:09:40]  *** The last 200 lines of the pilot log: ***
[2025-12-03 02:09:40] 2025-12-03 01:08:33,936 | INFO     | time since job start (72366s) is within the limit (172800.0s)
[2025-12-03 02:09:40] 2025-12-03 01:08:33,936 | INFO     | 72377s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-03 02:09:40] 2025-12-03 01:08:34,499 | INFO     | monitor loop #4924: job 0:6896262571 is in state 'finished'
[2025-12-03 02:09:40] 2025-12-03 01:08:34,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:09:40] 2025-12-03 01:08:35,943 | INFO     | time since job start (72368s) is within the limit (172800.0s)
[2025-12-03 02:09:40] 2025-12-03 01:08:37,018 | INFO     | monitor loop #4925: job 0:6896262571 is in state 'finished'
[2025-12-03 02:09:40] 2025-12-03 01:08:37,018 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:09:40] 2025-12-03 01:08:37,155 | INFO     | PID=20167 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 02:09:40] 2025-12-03 01:08:37,155 | INFO     | .. there are 9 such processes running
[2025-12-03 02:09:40] 2025-12-03 01:08:38,159 | INFO     | time since job start (72371s) is within the limit (172800.0s)
[2025-12-03 02:09:40] 2025-12-03 01:08:39,524 | INFO     | monitor loop #4926: job 0:6896262571 is in state 'finished'
[2025-12-03 02:09:40] 2025-12-03 01:08:39,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:09:40] 2025-12-03 01:08:40,168 | INFO     | time since job start (72373s) is within the limit (172800.0s)
[2025-12-03 02:09:40] 2025-12-03 01:08:42,029 | INFO     | monitor loop #4927: job 0:6896262571 is in state 'finished'
[2025-12-03 02:09:40] 2025-12-03 01:08:42,029 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:09:40] 2025-12-03 01:08:42,175 | INFO     | time since job start (72375s) is within the limit (172800.0s)
[2025-12-03 02:09:40] 2025-12-03 01:08:42,946 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 02:09:40] 2025-12-03 01:08:42,947 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 02:09:40] 2025-12-03 01:08:42,949 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6896262571/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 02:09:40] 2025-12-03 01:08:42,950 | INFO     | extracted standard info from prmon json
[2025-12-03 02:09:40] 2025-12-03 01:08:42,950 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 02:09:40] 2025-12-03 01:08:42,950 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 02:09:40] 2025-12-03 01:08:42,972 | INFO     | fitting pss+swap vs Time
[2025-12-03 02:09:40] 2025-12-03 01:08:42,974 | INFO     | sum of square deviations: 504314086676.18256
[2025-12-03 02:09:40] 2025-12-03 01:08:43,019 | INFO     | sum of deviations: 3894703436250.918
[2025-12-03 02:09:40] 2025-12-03 01:08:43,020 | INFO     | mean x: 1764688192.5569727
[2025-12-03 02:09:40] 2025-12-03 01:08:43,020 | INFO     | mean y: 3336093.5161564625
[2025-12-03 02:09:40] 2025-12-03 01:08:43,020 | INFO     | intersect: -13624951017.718433
[2025-12-03 02:09:40] 2025-12-03 01:08:43,022 | INFO     | chi2: 21.973721627089457
[2025-12-03 02:09:40] 2025-12-03 01:08:43,024 | INFO     | sum of square deviations: 497909210805.5732
[2025-12-03 02:09:40] 2025-12-03 01:08:43,068 | INFO     | sum of deviations: 4394713994921.611
[2025-12-03 02:09:40] 2025-12-03 01:08:43,069 | INFO     | mean x: 1764688040.061486
[2025-12-03 02:09:40] 2025-12-03 01:08:43,069 | INFO     | mean y: 3347998.0888129803
[2025-12-03 02:09:40] 2025-12-03 01:08:43,069 | INFO     | intersect: -15572381588.800352
[2025-12-03 02:09:40] 2025-12-03 01:08:43,070 | INFO     | chi2: 18.407402108854104
[2025-12-03 02:09:40] 2025-12-03 01:08:43,071 | INFO     | current chi2=18.407402108854104 (change=16.22992945281856 %)
[2025-12-03 02:09:40] 2025-12-03 01:08:43,071 | INFO     | right removable region: 1170
[2025-12-03 02:09:40] 2025-12-03 01:08:43,072 | INFO     | sum of square deviations: 497908452575.5726
[2025-12-03 02:09:40] 2025-12-03 01:08:43,110 | INFO     | sum of deviations: 3296867175246.8813
[2025-12-03 02:09:40] 2025-12-03 01:08:43,110 | INFO     | mean x: 1764688345.061486
[2025-12-03 02:09:40] 2025-12-03 01:08:43,110 | INFO     | mean y: 3350326.7933390266
[2025-12-03 02:09:40] 2025-12-03 01:08:43,110 | INFO     | intersect: -11681414310.719835
[2025-12-03 02:09:40] 2025-12-03 01:08:43,111 | INFO     | chi2: 16.684337603774022
[2025-12-03 02:09:40] 2025-12-03 01:08:43,112 | INFO     | current chi2=16.684337603774022 (change=24.0714072612744 %)
[2025-12-03 02:09:40] 2025-12-03 01:08:43,112 | INFO     | left removable region: 10
[2025-12-03 02:09:40] 2025-12-03 01:08:43,113 | INFO     | sum of square deviations: 484008360786.06104
[2025-12-03 02:09:40] 2025-12-03 01:08:43,148 | INFO     | sum of deviations: 3344563220874.5894
[2025-12-03 02:09:40] 2025-12-03 01:08:43,148 | INFO     | mean x: 1764688314.5715518
[2025-12-03 02:09:40] 2025-12-03 01:08:43,148 | INFO     | mean y: 3378583.8120689653
[2025-12-03 02:09:40] 2025-12-03 01:08:43,148 | INFO     | intersect: -12190856291.87844
[2025-12-03 02:09:40] 2025-12-03 01:08:43,150 | INFO     | chi2: 7.658328202727493
[2025-12-03 02:09:40] 2025-12-03 01:08:43,150 | INFO     | current memory leak: 6.91 B/s (using 1160 data points, chi2=7.66)
[2025-12-03 02:09:40] 2025-12-03 01:08:43,151 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-12-03 02:09:40] 2025-12-03 01:08:43,151 | INFO     | ..............................
[2025-12-03 02:09:40] 2025-12-03 01:08:43,152 | INFO     | . Timing measurements:
[2025-12-03 02:09:40] 2025-12-03 01:08:43,152 | INFO     | . get job = 0 s
[2025-12-03 02:09:40] 2025-12-03 01:08:43,152 | INFO     | . initial setup = 10 s
[2025-12-03 02:09:40] 2025-12-03 01:08:43,152 | INFO     | . payload setup = 277 s
[2025-12-03 02:09:40] 2025-12-03 01:08:43,152 | INFO     | . stage-in = 0 s
[2025-12-03 02:09:40] 2025-12-03 01:08:43,152 | INFO     | . payload execution = 71850 s
[2025-12-03 02:09:40] 2025-12-03 01:08:43,152 | INFO     | . stage-out = 4 s
[2025-12-03 02:09:40] 2025-12-03 01:08:43,152 | INFO     | . log creation = 1 s
[2025-12-03 02:09:40] 2025-12-03 01:08:43,152 | INFO     | ..............................
[2025-12-03 02:09:40] 2025-12-03 01:08:43,712 | INFO     | 
[2025-12-03 02:09:40] 2025-12-03 01:08:43,713 | INFO     | job summary report
[2025-12-03 02:09:40] 2025-12-03 01:08:43,713 | INFO     | --------------------------------------------------
[2025-12-03 02:09:40] 2025-12-03 01:08:43,713 | INFO     | PanDA job id: 6896262571
[2025-12-03 02:09:40] 2025-12-03 01:08:43,713 | INFO     | task id: 47531058
[2025-12-03 02:09:40] 2025-12-03 01:08:43,713 | INFO     | errors: (none)
[2025-12-03 02:09:40] 2025-12-03 01:08:43,713 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 02:09:40] 2025-12-03 01:08:43,713 | INFO     | pilot state: finished 
[2025-12-03 02:09:40] 2025-12-03 01:08:43,713 | INFO     | transexitcode: 0
[2025-12-03 02:09:40] 2025-12-03 01:08:43,713 | INFO     | exeerrorcode: 0
[2025-12-03 02:09:40] 2025-12-03 01:08:43,714 | INFO     | exeerrordiag: 
[2025-12-03 02:09:40] 2025-12-03 01:08:43,714 | INFO     | exitcode: 0
[2025-12-03 02:09:40] 2025-12-03 01:08:43,714 | INFO     | exitmsg: OK
[2025-12-03 02:09:40] 2025-12-03 01:08:43,714 | INFO     | cpuconsumptiontime: 267462 s
[2025-12-03 02:09:40] 2025-12-03 01:08:43,714 | INFO     | nevents: 1000
[2025-12-03 02:09:40] 2025-12-03 01:08:43,714 | INFO     | neventsw: 0
[2025-12-03 02:09:40] 2025-12-03 01:08:43,714 | INFO     | pid: 27414
[2025-12-03 02:09:40] 2025-12-03 01:08:43,714 | INFO     | pgrp: 27414
[2025-12-03 02:09:40] 2025-12-03 01:08:43,714 | INFO     | corecount: 8
[2025-12-03 02:09:40] 2025-12-03 01:08:43,714 | INFO     | event service: False
[2025-12-03 02:09:40] 2025-12-03 01:08:43,714 | INFO     | sizes: {0: 2284224, 1: 2284479, 2: 2284479, 12: 2284507, 23: 2284535, 34: 2284563, 44: 2284719, 55: 2284747, 66: 2284775, 77: 2284803, 87: 2284859, 92: 2285429, 98
[2025-12-03 02:09:40] 2025-12-03 01:08:43,715 | INFO     | --------------------------------------------------
[2025-12-03 02:09:40] 2025-12-03 01:08:43,715 | INFO     | 
[2025-12-03 02:09:40] 2025-12-03 01:08:43,715 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-12-03 02:09:40] 2025-12-03 01:08:43,737 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,737 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,738 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,738 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,738 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,738 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,738 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,738 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,738 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,738 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,738 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,738 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,739 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,739 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,739 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,739 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,739 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,739 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 02:09:40] 2025-12-03 01:08:43,739 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,739 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 02:09:40] 2025-12-03 01:08:43,739 | INFO     | job 6896262571 has completed (purged errors)
[2025-12-03 02:09:40] 2025-12-03 01:08:43,740 | INFO     | overall cleanup function is called
[2025-12-03 02:09:40] 2025-12-03 01:08:44,756 | INFO     | --- collectZombieJob: --- 10, [27414]
[2025-12-03 02:09:40] 2025-12-03 01:08:44,756 | INFO     | zombie collector waiting for pid 27414
[2025-12-03 02:09:40] 2025-12-03 01:08:44,757 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 02:09:40] 2025-12-03 01:08:44,757 | INFO     | collected zombie processes
[2025-12-03 02:09:40] 2025-12-03 01:08:44,757 | INFO     | will attempt to kill all subprocesses of pid=27414
[2025-12-03 02:09:40] 2025-12-03 01:08:44,859 | INFO     | process IDs to be killed: [27414] (in reverse order)
[2025-12-03 02:09:40] 2025-12-03 01:08:44,922 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 02:09:40] 2025-12-03 01:08:44,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 02:09:40] 2025-12-03 01:08:44,925 | INFO     | did not find any defunct processes belonging to 27414
[2025-12-03 02:09:40] 2025-12-03 01:08:44,927 | INFO     | did not find any defunct processes belonging to 27414
[2025-12-03 02:09:40] 2025-12-03 01:08:44,933 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 02:09:40] 2025-12-03 01:08:44,933 | INFO     | ready for new job
[2025-12-03 02:09:40] 2025-12-03 01:08:44,933 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 02:09:40] 2025-12-03 01:08:44,938 | INFO     | ***************************************
[2025-12-03 02:09:40] 2025-12-03 01:08:44,938 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 02:09:40] 2025-12-03 01:08:44,938 | INFO     | ***************************************
[2025-12-03 02:09:40] 2025-12-03 01:08:44,938 | INFO     | 
[2025-12-03 02:09:40] 2025-12-03 01:08:44,939 | INFO     | pilot is running in a VM
[2025-12-03 02:09:40] 2025-12-03 01:08:44,939 | INFO     | architecture information:
[2025-12-03 02:09:40] 2025-12-03 01:08:44,940 | INFO     | executing command: cat /etc/os-release
[2025-12-03 02:09:40] 2025-12-03 01:08:44,957 | INFO     | cat /etc/os-release:
[2025-12-03 02:09:40] NAME="CentOS Linux"
[2025-12-03 02:09:40] VERSION="7 (Core)"
[2025-12-03 02:09:40] ID="centos"
[2025-12-03 02:09:40] ID_LIKE="rhel fedora"
[2025-12-03 02:09:40] VERSION_ID="7"
[2025-12-03 02:09:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 02:09:40] ANSI_COLOR="0;31"
[2025-12-03 02:09:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 02:09:40] HOME_URL="https://www.centos.org/"
[2025-12-03 02:09:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 02:09:40] 
[2025-12-03 02:09:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 02:09:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 02:09:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 02:09:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 02:09:40] 
[2025-12-03 02:09:40] 2025-12-03 01:08:44,957 | INFO     | ***************************************
[2025-12-03 02:09:40] 2025-12-03 01:08:45,460 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-12-03 02:09:40] 2025-12-03 01:08:45,511 | INFO     | sufficient remaining disk space (492151242752 B)
[2025-12-03 02:09:40] 2025-12-03 01:08:45,511 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 02:09:40] 2025-12-03 01:08:45,512 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 02:09:40] 2025-12-03 01:08:45,512 | INFO     | update_server=False
[2025-12-03 02:09:40] 2025-12-03 01:08:45,512 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 02:09:40] 2025-12-03 01:08:45,512 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 02:09:40] 2025-12-03 01:08:45,595 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:09:40] 2025-12-03 01:08:45,595 | INFO     | aborting loop
[2025-12-03 02:09:40] 2025-12-03 01:08:45,738 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 02:09:40] 2025-12-03 01:08:46,143 | INFO     | all data control threads have been joined
[2025-12-03 02:09:40] 2025-12-03 01:08:46,517 | INFO     | [job] retrieve thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:46,575 | INFO     | [job] validate thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:46,584 | INFO     | all payload control threads have been joined
[2025-12-03 02:09:40] 2025-12-03 01:08:46,601 | INFO     | [job] job monitor thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:46,786 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:46,969 | INFO     | [payload] validate_post thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:46,978 | INFO     | all job control threads have been joined
[2025-12-03 02:09:40] 2025-12-03 01:08:47,149 | INFO     | [data] control thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:47,217 | INFO     | [payload] failed_post thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:47,296 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:47,329 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:47,477 | INFO     | [data] copytool_in thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:47,520 | INFO     | [data] copytool_out thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:47,590 | INFO     | [payload] control thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:47,632 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:47,984 | INFO     | [job] control thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:48,293 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:09:40] 2025-12-03 01:08:49,299 | INFO     | [job] queue monitor thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:08:49,746 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 02:09:40] 2025-12-03 01:09:15,408 | INFO     | PID=20167 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 02:09:40] 2025-12-03 01:09:15,408 | INFO     | .. there are 9 such processes running
[2025-12-03 02:09:40] 2025-12-03 01:09:15,408 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 02:09:40] 2025-12-03 01:09:15,408 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 02:09:40] 2025-12-03 01:09:15,408 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 02:09:40] 2025-12-03 01:09:33,015 | INFO     | [monitor] cgroup control has ended
[2025-12-03 02:09:40] 2025-12-03 01:09:34,737 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140021557282624)>', '<ExcThread(monitor, started 140020807616256)>']
[2025-12-03 02:09:40] 2025-12-03 01:09:35,528 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 02:09:40] 2025-12-03 01:09:35,528 | INFO     | [monitor] control thread has ended
[2025-12-03 02:09:40] 2025-12-03 01:09:39,763 | INFO     | all workflow threads have been joined
[2025-12-03 02:09:40] 2025-12-03 01:09:39,763 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 02:09:40] 2025-12-03 01:09:39,763 | INFO     | traces error code: 0
[2025-12-03 02:09:40] 2025-12-03 01:09:39,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 02:09:40] 2025-12-03 01:09:39,979 [wrapper] ==== pilot stdout END ====
[2025-12-03 02:09:40] 2025-12-03 01:09:39,994 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 02:09:40] 2025-12-03 01:09:40,026 [wrapper] pilotpid: 20167
[2025-12-03 02:09:40] 2025-12-03 01:09:40,031 [wrapper] Pilot exit status: 0
[2025-12-03 02:09:40] 2025-12-03 01:09:40,051 [wrapper] pandaids: 6896262571
[2025-12-03 02:09:40] 2025-12-03 01:09:40,091 [wrapper] cleanup supervisor_pilot 27657 20168
[2025-12-03 02:09:40] 2025-12-03 01:09:40,094 [wrapper] Test setup, not cleaning
[2025-12-03 02:09:40] 2025-12-03 01:09:40,097 [wrapper] apfmon messages muted
[2025-12-03 02:09:40] 2025-12-03 01:09:40,101 [wrapper] ==== wrapper stdout END ====
[2025-12-03 02:09:40] 2025-12-03 01:09:40,104 [wrapper] ==== wrapper stderr END ====
[2025-12-03 02:09:40]  *** Error codes and diagnostics ***
[2025-12-03 02:09:40]     "exeErrorCode": 0,
[2025-12-03 02:09:40]     "exeErrorDiag": "",
[2025-12-03 02:09:40]     "pilotErrorCode": 0,
[2025-12-03 02:09:40]     "pilotErrorDiag": "",
[2025-12-03 02:09:40]  *** Listing of results directory ***
[2025-12-03 02:09:40] total 1073028
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc    576529 Nov 28 11:28 pilot3.tar.gz
[2025-12-03 02:09:40] -rwx------. 1 boinc boinc     36292 Nov 28 11:28 runpilot2-wrapper.sh
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc      5112 Nov 28 11:32 queuedata.json
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc       100 Dec  2 05:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 02:09:40] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 05:58 run_atlas
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc       105 Dec  2 05:58 job.xml
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc      6393 Dec  2 05:58 init_data.xml
[2025-12-03 02:09:40] -rw-r--r--. 2 boinc boinc 377444384 Dec  2 05:58 EVNT.47531050._000424.pool.root.1
[2025-12-03 02:09:40] -rw-r--r--. 2 boinc boinc     15847 Dec  2 05:58 start_atlas.sh
[2025-12-03 02:09:40] drwxrwx--x. 2 boinc boinc        68 Dec  2 05:58 shared
[2025-12-03 02:09:40] -rw-r--r--. 2 boinc boinc    590124 Dec  2 05:58 input.tar.gz
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc         0 Dec  2 05:58 boinc_lockfile
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc      2879 Dec  2 05:58 pandaJob.out
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc    992001 Dec  2 06:02 agis_schedconf.cvmfs.json
[2025-12-03 02:09:40] drwx------. 5 boinc boinc      4096 Dec  2 06:02 pilot3
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc       533 Dec  3 01:55 boinc_task_state.xml
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc 693199044 Dec  3 02:07 HITS.47531058._000405.pool.root.1
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc      1033 Dec  3 02:07 memory_monitor_summary.json
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc   1516240 Dec  3 02:07 agis_ddmendpoints.agis.ALL.json
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc   2408307 Dec  3 02:07 log.47531058._000405.job.log.tgz.1
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc        95 Dec  3 02:08 pilot_heartbeat.json
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc     28313 Dec  3 02:08 heartbeat.json
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc      8192 Dec  3 02:09 boinc_mmap_file
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc        29 Dec  3 02:09 wrapper_checkpoint.txt
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc      4885 Dec  3 02:09 pilotlog.txt
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc   9689297 Dec  3 02:09 log.47531058._000405.job.log.1
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc       353 Dec  3 02:09 output.list
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc       620 Dec  3 02:09 runtime_log
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc  12134400 Dec  3 02:09 result.tar.gz
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc       661 Dec  3 02:09 WYaNDmUtAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8CLKDmCPrdXo.diag
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc      8833 Dec  3 02:09 runtime_log.err
[2025-12-03 02:09:40] -rw-r--r--. 1 boinc boinc     21529 Dec  3 02:09 stderr.txt
[2025-12-03 02:09:40] HITS file was successfully produced:
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc 693199044 Dec  3 02:07 shared/HITS.pool.root.1
[2025-12-03 02:09:40]  *** Contents of shared directory: ***
[2025-12-03 02:09:40] total 1058004
[2025-12-03 02:09:40] -rw-r--r--. 2 boinc boinc 377444384 Dec  2 05:58 ATLAS.root_0
[2025-12-03 02:09:40] -rw-r--r--. 2 boinc boinc     15847 Dec  2 05:58 start_atlas.sh
[2025-12-03 02:09:40] -rw-r--r--. 2 boinc boinc    590124 Dec  2 05:58 input.tar.gz
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc 693199044 Dec  3 02:07 HITS.pool.root.1
[2025-12-03 02:09:40] -rw-------. 1 boinc boinc  12134400 Dec  3 02:09 result.tar.gz
02:09:41 (16362): run_atlas exited; CPU time 267851.514512
02:09:41 (16362): called boinc_finish(0)

</stderr_txt>
]]>

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