Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:02:31 (29960): wrapper (7.7.26015): starting
06:02:31 (29960): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 06:02:31] Arguments: --nthreads 8
[2025-12-02 06:02:31] Threads: 8
[2025-12-02 06:02:31] Checking for CVMFS
[2025-12-02 06:02:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 06:02:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 06:02:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 06:02:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 06:02:32] 2.11.2.0 29208 230544 136248 153544 3 258 24354267 25165824 2114 130560 8 99808097 99.901 40957595 2289 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 06:02:32] CVMFS is ok
[2025-12-02 06:02:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 06:02:32] Checking for apptainer binary...
[2025-12-02 06:02:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 06:02:32] Running /usr/bin/apptainer --version
[2025-12-02 06:02:32] apptainer version 1.3.2-1.el7
[2025-12-02 06:02:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 06:02:34] cg-vwn345.simple-grid.lan
[2025-12-02 06:02:34] apptainer works
[2025-12-02 06:02:34] Set ATHENA_PROC_NUMBER=8
[2025-12-02 06:02:34] Set ATHENA_CORE_NUMBER=8
[2025-12-02 06:02:34] Starting ATLAS job with PandaID=6896262488
[2025-12-02 06:02:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 02:28:15]  *** The last 200 lines of the pilot log: ***
[2025-12-03 02:28:15] 2025-12-03 01:27:30,430 | INFO     | time since job start (73313s) is within the limit (172800.0s)
[2025-12-03 02:28:15] 2025-12-03 01:27:30,728 | INFO     | monitor loop #5011: job 0:6896262488 is in state 'finished'
[2025-12-03 02:28:15] 2025-12-03 01:27:30,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:28:15] 2025-12-03 01:27:31,614 | INFO     | PID=1632 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 02:28:15] 2025-12-03 01:27:31,615 | INFO     | .. there are 9 such processes running
[2025-12-03 02:28:15] 2025-12-03 01:27:32,617 | INFO     | time since job start (73315s) is within the limit (172800.0s)
[2025-12-03 02:28:15] 2025-12-03 01:27:33,247 | INFO     | monitor loop #5012: job 0:6896262488 is in state 'finished'
[2025-12-03 02:28:15] 2025-12-03 01:27:33,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:28:15] 2025-12-03 01:27:34,626 | INFO     | time since job start (73317s) is within the limit (172800.0s)
[2025-12-03 02:28:15] 2025-12-03 01:27:35,752 | INFO     | monitor loop #5013: job 0:6896262488 is in state 'finished'
[2025-12-03 02:28:15] 2025-12-03 01:27:35,752 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:28:15] 2025-12-03 01:27:36,636 | INFO     | time since job start (73319s) is within the limit (172800.0s)
[2025-12-03 02:28:15] 2025-12-03 01:27:38,257 | INFO     | monitor loop #5014: job 0:6896262488 is in state 'finished'
[2025-12-03 02:28:15] 2025-12-03 01:27:38,257 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:28:15] 2025-12-03 01:27:38,633 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 02:28:15] 2025-12-03 01:27:38,634 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 02:28:15] 2025-12-03 01:27:38,636 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6896262488/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 02:28:15] 2025-12-03 01:27:38,637 | INFO     | extracted standard info from prmon json
[2025-12-03 02:28:15] 2025-12-03 01:27:38,637 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 02:28:15] 2025-12-03 01:27:38,637 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 02:28:15] 2025-12-03 01:27:38,662 | INFO     | fitting pss+swap vs Time
[2025-12-03 02:28:15] 2025-12-03 01:27:38,665 | INFO     | sum of square deviations: 523860159526.3494
[2025-12-03 02:28:15] 2025-12-03 01:27:38,685 | INFO     | time since job start (73321s) is within the limit (172800.0s)
[2025-12-03 02:28:15] 2025-12-03 01:27:38,714 | INFO     | sum of deviations: 4431404692258.391
[2025-12-03 02:28:15] 2025-12-03 01:27:38,715 | INFO     | mean x: 1764688873.074727
[2025-12-03 02:28:15] 2025-12-03 01:27:38,715 | INFO     | mean y: 3341583.20906801
[2025-12-03 02:28:15] 2025-12-03 01:27:38,715 | INFO     | intersect: -14924402797.256992
[2025-12-03 02:28:15] 2025-12-03 01:27:38,717 | INFO     | chi2: 22.179791881997478
[2025-12-03 02:28:15] 2025-12-03 01:27:38,719 | INFO     | sum of square deviations: 517290501153.0467
[2025-12-03 02:28:15] 2025-12-03 01:27:38,764 | INFO     | sum of deviations: 4920092999354.603
[2025-12-03 02:28:15] 2025-12-03 01:27:38,764 | INFO     | mean x: 1764688720.579258
[2025-12-03 02:28:15] 2025-12-03 01:27:38,764 | INFO     | mean y: 3352928.642495784
[2025-12-03 02:28:15] 2025-12-03 01:27:38,764 | INFO     | intersect: -16781089470.374676
[2025-12-03 02:28:15] 2025-12-03 01:27:38,766 | INFO     | chi2: 18.923258820228558
[2025-12-03 02:28:15] 2025-12-03 01:27:38,766 | INFO     | current chi2=18.923258820228558 (change=14.68243290601896 %)
[2025-12-03 02:28:15] 2025-12-03 01:27:38,766 | INFO     | right removable region: 1185
[2025-12-03 02:28:15] 2025-12-03 01:27:38,768 | INFO     | sum of square deviations: 517289720353.04645
[2025-12-03 02:28:15] 2025-12-03 01:27:38,812 | INFO     | sum of deviations: 3825350919058.151
[2025-12-03 02:28:15] 2025-12-03 01:27:38,813 | INFO     | mean x: 1764689025.579258
[2025-12-03 02:28:15] 2025-12-03 01:27:38,813 | INFO     | mean y: 3355650.1846543
[2025-12-03 02:28:15] 2025-12-03 01:27:38,813 | INFO     | intersect: -13046497305.030157
[2025-12-03 02:28:15] 2025-12-03 01:27:38,815 | INFO     | chi2: 16.82054911322023
[2025-12-03 02:28:15] 2025-12-03 01:27:38,815 | INFO     | current chi2=16.82054911322023 (change=24.162727934012523 %)
[2025-12-03 02:28:15] 2025-12-03 01:27:38,815 | INFO     | left removable region: 10
[2025-12-03 02:28:15] 2025-12-03 01:27:38,817 | INFO     | sum of square deviations: 503029540347.6173
[2025-12-03 02:28:15] 2025-12-03 01:27:38,860 | INFO     | sum of deviations: 3786256128522.4053
[2025-12-03 02:28:15] 2025-12-03 01:27:38,860 | INFO     | mean x: 1764688995.0893617
[2025-12-03 02:28:15] 2025-12-03 01:27:38,861 | INFO     | mean y: 3381772.6723404257
[2025-12-03 02:28:15] 2025-12-03 01:27:38,861 | INFO     | intersect: -13279266633.971655
[2025-12-03 02:28:15] 2025-12-03 01:27:38,862 | INFO     | chi2: 8.614752614473206
[2025-12-03 02:28:15] 2025-12-03 01:27:38,863 | INFO     | current memory leak: 7.53 B/s (using 1175 data points, chi2=8.61)
[2025-12-03 02:28:15] 2025-12-03 01:27:38,863 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-12-03 02:28:15] 2025-12-03 01:27:38,864 | INFO     | ..............................
[2025-12-03 02:28:15] 2025-12-03 01:27:38,864 | INFO     | . Timing measurements:
[2025-12-03 02:28:15] 2025-12-03 01:27:38,864 | INFO     | . get job = 0 s
[2025-12-03 02:28:15] 2025-12-03 01:27:38,864 | INFO     | . initial setup = 13 s
[2025-12-03 02:28:15] 2025-12-03 01:27:38,864 | INFO     | . payload setup = 294 s
[2025-12-03 02:28:15] 2025-12-03 01:27:38,864 | INFO     | . stage-in = 0 s
[2025-12-03 02:28:15] 2025-12-03 01:27:38,864 | INFO     | . payload execution = 72781 s
[2025-12-03 02:28:15] 2025-12-03 01:27:38,864 | INFO     | . stage-out = 3 s
[2025-12-03 02:28:15] 2025-12-03 01:27:38,865 | INFO     | . log creation = 0 s
[2025-12-03 02:28:15] 2025-12-03 01:27:38,865 | INFO     | ..............................
[2025-12-03 02:28:15] 2025-12-03 01:27:39,285 | INFO     | 
[2025-12-03 02:28:15] 2025-12-03 01:27:39,285 | INFO     | job summary report
[2025-12-03 02:28:15] 2025-12-03 01:27:39,285 | INFO     | --------------------------------------------------
[2025-12-03 02:28:15] 2025-12-03 01:27:39,285 | INFO     | PanDA job id: 6896262488
[2025-12-03 02:28:15] 2025-12-03 01:27:39,286 | INFO     | task id: 47531058
[2025-12-03 02:28:15] 2025-12-03 01:27:39,286 | INFO     | errors: (none)
[2025-12-03 02:28:15] 2025-12-03 01:27:39,286 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 02:28:15] 2025-12-03 01:27:39,286 | INFO     | pilot state: finished 
[2025-12-03 02:28:15] 2025-12-03 01:27:39,286 | INFO     | transexitcode: 0
[2025-12-03 02:28:15] 2025-12-03 01:27:39,286 | INFO     | exeerrorcode: 0
[2025-12-03 02:28:15] 2025-12-03 01:27:39,286 | INFO     | exeerrordiag: 
[2025-12-03 02:28:15] 2025-12-03 01:27:39,286 | INFO     | exitcode: 0
[2025-12-03 02:28:15] 2025-12-03 01:27:39,286 | INFO     | exitmsg: OK
[2025-12-03 02:28:15] 2025-12-03 01:27:39,286 | INFO     | cpuconsumptiontime: 268994 s
[2025-12-03 02:28:15] 2025-12-03 01:27:39,286 | INFO     | nevents: 1000
[2025-12-03 02:28:15] 2025-12-03 01:27:39,286 | INFO     | neventsw: 0
[2025-12-03 02:28:15] 2025-12-03 01:27:39,287 | INFO     | pid: 8932
[2025-12-03 02:28:15] 2025-12-03 01:27:39,287 | INFO     | pgrp: 8932
[2025-12-03 02:28:15] 2025-12-03 01:27:39,287 | INFO     | corecount: 8
[2025-12-03 02:28:15] 2025-12-03 01:27:39,287 | INFO     | event service: False
[2025-12-03 02:28:15] 2025-12-03 01:27:39,287 | INFO     | sizes: {0: 2283622, 1: 2284308, 2: 2284507, 13: 2284507, 24: 2284563, 34: 2284591, 45: 2284747, 56: 2284775, 66: 2284803, 77: 2284831, 88: 2284887, 98: 2285457, 99
[2025-12-03 02:28:15] 2025-12-03 01:27:39,287 | INFO     | --------------------------------------------------
[2025-12-03 02:28:15] 2025-12-03 01:27:39,287 | INFO     | 
[2025-12-03 02:28:15] 2025-12-03 01:27:39,287 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-12-03 02:28:15] 2025-12-03 01:27:39,545 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,545 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,545 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,545 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,545 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,545 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,545 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,545 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,545 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,546 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,546 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,546 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,546 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,546 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,546 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,546 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,546 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,546 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 02:28:15] 2025-12-03 01:27:39,546 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,547 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 02:28:15] 2025-12-03 01:27:39,547 | INFO     | job 6896262488 has completed (purged errors)
[2025-12-03 02:28:15] 2025-12-03 01:27:39,547 | INFO     | overall cleanup function is called
[2025-12-03 02:28:15] 2025-12-03 01:27:40,564 | INFO     | --- collectZombieJob: --- 10, [8932]
[2025-12-03 02:28:15] 2025-12-03 01:27:40,564 | INFO     | zombie collector waiting for pid 8932
[2025-12-03 02:28:15] 2025-12-03 01:27:40,564 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 02:28:15] 2025-12-03 01:27:40,565 | INFO     | collected zombie processes
[2025-12-03 02:28:15] 2025-12-03 01:27:40,565 | INFO     | will attempt to kill all subprocesses of pid=8932
[2025-12-03 02:28:15] 2025-12-03 01:27:40,686 | INFO     | process IDs to be killed: [8932] (in reverse order)
[2025-12-03 02:28:15] 2025-12-03 01:27:41,050 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 02:28:15] 2025-12-03 01:27:41,051 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 02:28:15] 2025-12-03 01:27:41,054 | INFO     | did not find any defunct processes belonging to 8932
[2025-12-03 02:28:15] 2025-12-03 01:27:41,057 | INFO     | did not find any defunct processes belonging to 8932
[2025-12-03 02:28:15] 2025-12-03 01:27:41,059 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 02:28:15] 2025-12-03 01:27:41,059 | INFO     | ready for new job
[2025-12-03 02:28:15] 2025-12-03 01:27:41,059 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 02:28:15] 2025-12-03 01:27:41,064 | INFO     | ***************************************
[2025-12-03 02:28:15] 2025-12-03 01:27:41,064 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 02:28:15] 2025-12-03 01:27:41,064 | INFO     | ***************************************
[2025-12-03 02:28:15] 2025-12-03 01:27:41,064 | INFO     | 
[2025-12-03 02:28:15] 2025-12-03 01:27:41,065 | INFO     | pilot is running in a VM
[2025-12-03 02:28:15] 2025-12-03 01:27:41,065 | INFO     | architecture information:
[2025-12-03 02:28:15] 2025-12-03 01:27:41,066 | INFO     | executing command: cat /etc/os-release
[2025-12-03 02:28:15] 2025-12-03 01:27:41,089 | INFO     | cat /etc/os-release:
[2025-12-03 02:28:15] NAME="CentOS Linux"
[2025-12-03 02:28:15] VERSION="7 (Core)"
[2025-12-03 02:28:15] ID="centos"
[2025-12-03 02:28:15] ID_LIKE="rhel fedora"
[2025-12-03 02:28:15] VERSION_ID="7"
[2025-12-03 02:28:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 02:28:15] ANSI_COLOR="0;31"
[2025-12-03 02:28:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 02:28:15] HOME_URL="https://www.centos.org/"
[2025-12-03 02:28:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 02:28:15] 
[2025-12-03 02:28:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 02:28:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 02:28:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 02:28:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 02:28:15] 
[2025-12-03 02:28:15] 2025-12-03 01:27:41,089 | INFO     | ***************************************
[2025-12-03 02:28:15] 2025-12-03 01:27:41,592 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-12-03 02:28:15] 2025-12-03 01:27:41,802 | INFO     | sufficient remaining disk space (489919873024 B)
[2025-12-03 02:28:15] 2025-12-03 01:27:41,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 02:28:15] 2025-12-03 01:27:41,802 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 02:28:15] 2025-12-03 01:27:41,803 | INFO     | update_server=False
[2025-12-03 02:28:15] 2025-12-03 01:27:41,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 02:28:15] 2025-12-03 01:27:41,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:28:15] 2025-12-03 01:27:41,803 | INFO     | aborting loop
[2025-12-03 02:28:15] 2025-12-03 01:27:41,893 | INFO     | all data control threads have been joined
[2025-12-03 02:28:15] 2025-12-03 01:27:42,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 02:28:15] 2025-12-03 01:27:42,425 | INFO     | all job control threads have been joined
[2025-12-03 02:28:15] 2025-12-03 01:27:42,808 | INFO     | [job] retrieve thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:42,812 | INFO     | [job] job monitor thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:42,890 | INFO     | [payload] validate_post thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:42,899 | INFO     | [data] control thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:42,926 | INFO     | [payload] failed_post thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:43,116 | INFO     | all payload control threads have been joined
[2025-12-03 02:28:15] 2025-12-03 01:27:43,431 | INFO     | [job] control thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:43,449 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 02:28:15] 2025-12-03 01:27:44,015 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:44,028 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:44,032 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:28:15] 2025-12-03 01:27:44,042 | INFO     | [data] copytool_in thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:44,122 | INFO     | [payload] control thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:44,126 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:44,163 | INFO     | [job] validate thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:44,218 | INFO     | [data] copytool_out thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:44,436 | INFO     | [monitor] cgroup control has ended
[2025-12-03 02:28:15] 2025-12-03 01:27:45,038 | INFO     | [job] queue monitor thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:47,458 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:51,952 | INFO     | job.realtimelogging is not enabled
[2025-12-03 02:28:15] 2025-12-03 01:27:52,958 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 02:28:15] 2025-12-03 01:27:54,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140428459476800)>', '<ExcThread(monitor, started 140428032595712)>']
[2025-12-03 02:28:15] 2025-12-03 01:27:59,697 | INFO     | all workflow threads have been joined
[2025-12-03 02:28:15] 2025-12-03 01:27:59,697 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 02:28:15] 2025-12-03 01:27:59,698 | INFO     | traces error code: 0
[2025-12-03 02:28:15] 2025-12-03 01:27:59,698 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 02:28:15] 2025-12-03 01:28:11,891 | INFO     | PID=1632 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 02:28:15] 2025-12-03 01:28:11,892 | INFO     | .. there are 9 such processes running
[2025-12-03 02:28:15] 2025-12-03 01:28:11,892 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 02:28:15] 2025-12-03 01:28:11,892 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 02:28:15] 2025-12-03 01:28:11,892 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 02:28:15] 2025-12-03 01:28:11,892 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 02:28:15] 2025-12-03 01:28:11,892 | INFO     | [monitor] control thread has ended
[2025-12-03 02:28:15] 2025-12-03 01:28:12,098 [wrapper] ==== pilot stdout END ====
[2025-12-03 02:28:15] 2025-12-03 01:28:12,118 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 02:28:15] 2025-12-03 01:28:12,124 [wrapper] pilotpid: 1632
[2025-12-03 02:28:15] 2025-12-03 01:28:12,215 [wrapper] Pilot exit status: 0
[2025-12-03 02:28:15] 2025-12-03 01:28:12,711 [wrapper] pandaids: 6896262488
[2025-12-03 02:28:15] 2025-12-03 01:28:13,529 [wrapper] cleanup supervisor_pilot  3782 1633
[2025-12-03 02:28:15] 2025-12-03 01:28:13,547 [wrapper] Test setup, not cleaning
[2025-12-03 02:28:15] 2025-12-03 01:28:13,561 [wrapper] apfmon messages muted
[2025-12-03 02:28:15] 2025-12-03 01:28:13,570 [wrapper] ==== wrapper stdout END ====
[2025-12-03 02:28:15] 2025-12-03 01:28:13,582 [wrapper] ==== wrapper stderr END ====
[2025-12-03 02:28:15]  *** Error codes and diagnostics ***
[2025-12-03 02:28:15]     "exeErrorCode": 0,
[2025-12-03 02:28:15]     "exeErrorDiag": "",
[2025-12-03 02:28:15]     "pilotErrorCode": 0,
[2025-12-03 02:28:15]     "pilotErrorDiag": "",
[2025-12-03 02:28:15]  *** Listing of results directory ***
[2025-12-03 02:28:15] total 1080324
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc      5112 Nov 28 11:28 queuedata.json
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc    576529 Nov 28 11:28 pilot3.tar.gz
[2025-12-03 02:28:15] -rwx------. 1 boinc boinc     36292 Nov 28 11:28 runpilot2-wrapper.sh
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc       100 Dec  2 06:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 02:28:15] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 06:02 run_atlas
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc       105 Dec  2 06:02 job.xml
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc      6392 Dec  2 06:02 init_data.xml
[2025-12-03 02:28:15] -rw-r--r--. 2 boinc boinc 378807059 Dec  2 06:02 EVNT.47531050._000419.pool.root.1
[2025-12-03 02:28:15] -rw-r--r--. 2 boinc boinc     15847 Dec  2 06:02 start_atlas.sh
[2025-12-03 02:28:15] drwxrwx--x. 2 boinc boinc        68 Dec  2 06:02 shared
[2025-12-03 02:28:15] -rw-r--r--. 2 boinc boinc    590117 Dec  2 06:02 input.tar.gz
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc         0 Dec  2 06:02 boinc_lockfile
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc      2879 Dec  2 06:02 pandaJob.out
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc    992001 Dec  2 06:05 agis_schedconf.cvmfs.json
[2025-12-03 02:28:15] drwx------. 5 boinc boinc      4096 Dec  2 06:05 pilot3
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc       533 Dec  3 02:15 boinc_task_state.xml
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc 698990221 Dec  3 02:26 HITS.47531058._000352.pool.root.1
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc      1031 Dec  3 02:26 memory_monitor_summary.json
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc   1516240 Dec  3 02:26 agis_ddmendpoints.agis.ALL.json
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc   2435455 Dec  3 02:26 log.47531058._000352.job.log.tgz.1
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc        95 Dec  3 02:27 pilot_heartbeat.json
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc     27805 Dec  3 02:27 heartbeat.json
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc      8192 Dec  3 02:27 boinc_mmap_file
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc        29 Dec  3 02:27 wrapper_checkpoint.txt
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc       819 Dec  3 02:28 pilotlog.txt
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc   9822798 Dec  3 02:28 log.47531058._000352.job.log.1
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc       353 Dec  3 02:28 output.list
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc       620 Dec  3 02:28 runtime_log
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc  12298240 Dec  3 02:28 result.tar.gz
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc       661 Dec  3 02:28 s33NDmJtAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSCLKDmgLLynm.diag
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc      8833 Dec  3 02:28 runtime_log.err
[2025-12-03 02:28:15] -rw-r--r--. 1 boinc boinc     21467 Dec  3 02:28 stderr.txt
[2025-12-03 02:28:15] HITS file was successfully produced:
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc 698990221 Dec  3 02:26 shared/HITS.pool.root.1
[2025-12-03 02:28:15]  *** Contents of shared directory: ***
[2025-12-03 02:28:15] total 1065148
[2025-12-03 02:28:15] -rw-r--r--. 2 boinc boinc 378807059 Dec  2 06:02 ATLAS.root_0
[2025-12-03 02:28:15] -rw-r--r--. 2 boinc boinc     15847 Dec  2 06:02 start_atlas.sh
[2025-12-03 02:28:15] -rw-r--r--. 2 boinc boinc    590117 Dec  2 06:02 input.tar.gz
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc 698990221 Dec  3 02:26 HITS.pool.root.1
[2025-12-03 02:28:15] -rw-------. 1 boinc boinc  12298240 Dec  3 02:28 result.tar.gz
02:28:17 (29960): run_atlas exited; CPU time 269423.537051
02:28:17 (29960): called boinc_finish(0)

</stderr_txt>
]]>

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