Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:14:20 (29225): wrapper (7.7.26015): starting
22:14:20 (29225): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 22:14:20] Arguments: --nthreads 8
[2025-12-01 22:14:20] Threads: 8
[2025-12-01 22:14:20] Checking for CVMFS
[2025-12-01 22:14:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 22:14:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 22:14:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 22:14:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 22:14:23] 2.11.2.0 14339 293116 142640 153531 1 72 21186737 25165824 2504 130560 18 158579810 99.890 83171389 3546 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 22:14:23] CVMFS is ok
[2025-12-01 22:14:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 22:14:23] Checking for apptainer binary...
[2025-12-01 22:14:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 22:14:23] Running /usr/bin/apptainer --version
[2025-12-01 22:14:23] apptainer version 1.3.2-1.el7
[2025-12-01 22:14:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 22:14:55] cg-vwn496.simple-grid.lan
[2025-12-01 22:14:55] apptainer works
[2025-12-01 22:14:55] Set ATHENA_PROC_NUMBER=8
[2025-12-01 22:14:55] Set ATHENA_CORE_NUMBER=8
[2025-12-01 22:14:56] Starting ATLAS job with PandaID=6900263516
[2025-12-01 22:14:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 20:20:07]  *** The last 200 lines of the pilot log: ***
[2025-12-02 20:20:07] 2025-12-02 19:19:10,859 | INFO     | monitor loop #5385: job 0:6900263516 is in state 'finished'
[2025-12-02 20:20:07] 2025-12-02 19:19:10,859 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:20:07] 2025-12-02 19:19:11,937 [wrapper] supervise_pilot (15 min periods counter: 89)
[2025-12-02 20:20:07] 2025-12-02 19:19:11,982 | INFO     | time since job start (79232s) is within the limit (172800.0s)
[2025-12-02 20:20:07] 2025-12-02 19:19:13,369 | INFO     | monitor loop #5386: job 0:6900263516 is in state 'finished'
[2025-12-02 20:20:07] 2025-12-02 19:19:13,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:20:07] 2025-12-02 19:19:13,988 | INFO     | time since job start (79234s) is within the limit (172800.0s)
[2025-12-02 20:20:07] 2025-12-02 19:19:15,876 | INFO     | monitor loop #5387: job 0:6900263516 is in state 'finished'
[2025-12-02 20:20:07] 2025-12-02 19:19:15,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:20:07] 2025-12-02 19:19:15,995 | INFO     | time since job start (79236s) is within the limit (172800.0s)
[2025-12-02 20:20:07] 2025-12-02 19:19:18,002 | INFO     | time since job start (79239s) is within the limit (172800.0s)
[2025-12-02 20:20:07] 2025-12-02 19:19:18,381 | INFO     | monitor loop #5388: job 0:6900263516 is in state 'finished'
[2025-12-02 20:20:07] 2025-12-02 19:19:18,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:20:07] 2025-12-02 19:19:19,764 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 20:20:07] 2025-12-02 19:19:19,765 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-02 20:20:07] 2025-12-02 19:19:19,767 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6900263516/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 20:20:07] 2025-12-02 19:19:19,767 | INFO     | extracted standard info from prmon json
[2025-12-02 20:20:07] 2025-12-02 19:19:19,767 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 20:20:07] 2025-12-02 19:19:19,767 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 20:20:07] 2025-12-02 19:19:19,789 | INFO     | fitting pss+swap vs Time
[2025-12-02 20:20:07] 2025-12-02 19:19:19,791 | INFO     | sum of square deviations: 664103964996.6344
[2025-12-02 20:20:07] 2025-12-02 19:19:19,836 | INFO     | sum of deviations: 2471750991475.0728
[2025-12-02 20:20:07] 2025-12-02 19:19:19,837 | INFO     | mean x: 1764663722.0581846
[2025-12-02 20:20:07] 2025-12-02 19:19:19,837 | INFO     | mean y: 2838676.159038014
[2025-12-02 20:20:07] 2025-12-02 19:19:19,837 | INFO     | intersect: -6565122869.800886
[2025-12-02 20:20:07] 2025-12-02 19:19:19,838 | INFO     | chi2: 22.666325094058188
[2025-12-02 20:20:07] 2025-12-02 19:19:19,840 | INFO     | sum of square deviations: 656406171556.0148
[2025-12-02 20:20:07] 2025-12-02 19:19:19,893 | INFO     | sum of deviations: 2911740522387.8823
[2025-12-02 20:20:07] 2025-12-02 19:19:19,893 | INFO     | mean x: 1764663569.5623052
[2025-12-02 20:20:07] 2025-12-02 19:19:19,893 | INFO     | mean y: 2847391.770249221
[2025-12-02 20:20:07] 2025-12-02 19:19:19,893 | INFO     | intersect: -7824992513.659001
[2025-12-02 20:20:07] 2025-12-02 19:19:19,895 | INFO     | chi2: 19.23728306198666
[2025-12-02 20:20:07] 2025-12-02 19:19:19,895 | INFO     | current chi2=19.23728306198666 (change=15.128354587001077 %)
[2025-12-02 20:20:07] 2025-12-02 19:19:19,895 | INFO     | right removable region: 1283
[2025-12-02 20:20:07] 2025-12-02 19:19:19,897 | INFO     | sum of square deviations: 656405339516.016
[2025-12-02 20:20:07] 2025-12-02 19:19:19,948 | INFO     | sum of deviations: 1937689795012.8738
[2025-12-02 20:20:07] 2025-12-02 19:19:19,949 | INFO     | mean x: 1764663874.5623052
[2025-12-02 20:20:07] 2025-12-02 19:19:19,949 | INFO     | mean y: 2849254.7328660437
[2025-12-02 20:20:07] 2025-12-02 19:19:19,949 | INFO     | intersect: -5206388049.595652
[2025-12-02 20:20:07] 2025-12-02 19:19:19,952 | INFO     | chi2: 18.103030977523048
[2025-12-02 20:20:07] 2025-12-02 19:19:19,953 | INFO     | current chi2=18.103030977523048 (change=20.132483309927352 %)
[2025-12-02 20:20:07] 2025-12-02 19:19:19,953 | INFO     | left removable region: 10
[2025-12-02 20:20:07] 2025-12-02 19:19:19,954 | INFO     | sum of square deviations: 639679256074.4957
[2025-12-02 20:20:07] 2025-12-02 19:19:20,002 | INFO     | sum of deviations: 2017228842530.9893
[2025-12-02 20:20:07] 2025-12-02 19:19:20,002 | INFO     | mean x: 1764663844.0714846
[2025-12-02 20:20:07] 2025-12-02 19:19:20,002 | INFO     | mean y: 2869286.1099764337
[2025-12-02 20:20:07] 2025-12-02 19:19:20,002 | INFO     | intersect: -5561998997.219268
[2025-12-02 20:20:07] 2025-12-02 19:19:20,004 | INFO     | chi2: 10.497650746844021
[2025-12-02 20:20:07] 2025-12-02 19:19:20,004 | INFO     | current memory leak: 3.15 B/s (using 1273 data points, chi2=10.50)
[2025-12-02 20:20:07] 2025-12-02 19:19:20,005 | INFO     | could have reported an average CPU frequency of 2249 MHz (44 samples)
[2025-12-02 20:20:07] 2025-12-02 19:19:20,005 | INFO     | ..............................
[2025-12-02 20:20:07] 2025-12-02 19:19:20,005 | INFO     | . Timing measurements:
[2025-12-02 20:20:07] 2025-12-02 19:19:20,005 | INFO     | . get job = 0 s
[2025-12-02 20:20:07] 2025-12-02 19:19:20,005 | INFO     | . initial setup = 17 s
[2025-12-02 20:20:07] 2025-12-02 19:19:20,005 | INFO     | . payload setup = 160 s
[2025-12-02 20:20:07] 2025-12-02 19:19:20,006 | INFO     | . stage-in = 0 s
[2025-12-02 20:20:07] 2025-12-02 19:19:20,006 | INFO     | . payload execution = 78780 s
[2025-12-02 20:20:07] 2025-12-02 19:19:20,006 | INFO     | . stage-out = 6 s
[2025-12-02 20:20:07] 2025-12-02 19:19:20,006 | INFO     | . log creation = 1 s
[2025-12-02 20:20:07] 2025-12-02 19:19:20,006 | INFO     | ..............................
[2025-12-02 20:20:07] 2025-12-02 19:19:20,024 | INFO     | time since job start (79241s) is within the limit (172800.0s)
[2025-12-02 20:20:07] 2025-12-02 19:19:20,124 | INFO     | 
[2025-12-02 20:20:07] 2025-12-02 19:19:20,124 | INFO     | job summary report
[2025-12-02 20:20:07] 2025-12-02 19:19:20,124 | INFO     | --------------------------------------------------
[2025-12-02 20:20:07] 2025-12-02 19:19:20,124 | INFO     | PanDA job id: 6900263516
[2025-12-02 20:20:07] 2025-12-02 19:19:20,124 | INFO     | task id: 47556185
[2025-12-02 20:20:07] 2025-12-02 19:19:20,125 | INFO     | errors: (none)
[2025-12-02 20:20:07] 2025-12-02 19:19:20,125 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 20:20:07] 2025-12-02 19:19:20,125 | INFO     | pilot state: finished 
[2025-12-02 20:20:07] 2025-12-02 19:19:20,125 | INFO     | transexitcode: 0
[2025-12-02 20:20:07] 2025-12-02 19:19:20,125 | INFO     | exeerrorcode: 0
[2025-12-02 20:20:07] 2025-12-02 19:19:20,125 | INFO     | exeerrordiag: 
[2025-12-02 20:20:07] 2025-12-02 19:19:20,125 | INFO     | exitcode: 0
[2025-12-02 20:20:07] 2025-12-02 19:19:20,125 | INFO     | exitmsg: OK
[2025-12-02 20:20:07] 2025-12-02 19:19:20,125 | INFO     | cpuconsumptiontime: 293614 s
[2025-12-02 20:20:07] 2025-12-02 19:19:20,125 | INFO     | nevents: 1000
[2025-12-02 20:20:07] 2025-12-02 19:19:20,125 | INFO     | neventsw: 0
[2025-12-02 20:20:07] 2025-12-02 19:19:20,125 | INFO     | pid: 7226
[2025-12-02 20:20:07] 2025-12-02 19:19:20,126 | INFO     | pgrp: 7226
[2025-12-02 20:20:07] 2025-12-02 19:19:20,126 | INFO     | corecount: 8
[2025-12-02 20:20:07] 2025-12-02 19:19:20,126 | INFO     | event service: False
[2025-12-02 20:20:07] 2025-12-02 19:19:20,126 | INFO     | sizes: {0: 2284090, 1: 2284345, 2: 2284345, 12: 2284373, 23: 2284401, 34: 2284429, 44: 2284585, 55: 2284613, 66: 2284641, 77: 2284669, 87: 2284725, 90: 2285295, 98
[2025-12-02 20:20:07] 2025-12-02 19:19:20,126 | INFO     | --------------------------------------------------
[2025-12-02 20:20:07] 2025-12-02 19:19:20,126 | INFO     | 
[2025-12-02 20:20:07] 2025-12-02 19:19:20,126 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-12-02 20:20:07] 2025-12-02 19:19:20,652 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,652 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,652 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,653 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,653 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,653 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,653 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,653 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,653 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,653 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,653 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,653 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,653 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,653 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,654 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,654 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,654 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,654 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 20:20:07] 2025-12-02 19:19:20,654 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,654 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 20:20:07] 2025-12-02 19:19:20,654 | INFO     | job 6900263516 has completed (purged errors)
[2025-12-02 20:20:07] 2025-12-02 19:19:20,654 | INFO     | overall cleanup function is called
[2025-12-02 20:20:07] 2025-12-02 19:19:21,174 | INFO     | PID=572 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-12-02 20:20:07] 2025-12-02 19:19:21,174 | INFO     | .. there are 9 such processes running
[2025-12-02 20:20:07] 2025-12-02 19:19:21,674 | INFO     | --- collectZombieJob: --- 10, [7226]
[2025-12-02 20:20:07] 2025-12-02 19:19:21,674 | INFO     | zombie collector waiting for pid 7226
[2025-12-02 20:20:07] 2025-12-02 19:19:21,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 20:20:07] 2025-12-02 19:19:21,674 | INFO     | collected zombie processes
[2025-12-02 20:20:07] 2025-12-02 19:19:21,674 | INFO     | will attempt to kill all subprocesses of pid=7226
[2025-12-02 20:20:07] 2025-12-02 19:19:21,774 | INFO     | process IDs to be killed: [7226] (in reverse order)
[2025-12-02 20:20:07] 2025-12-02 19:19:22,821 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 20:20:07] 2025-12-02 19:19:22,821 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 20:20:07] 2025-12-02 19:19:22,824 | INFO     | did not find any defunct processes belonging to 7226
[2025-12-02 20:20:07] 2025-12-02 19:19:22,827 | INFO     | did not find any defunct processes belonging to 7226
[2025-12-02 20:20:07] 2025-12-02 19:19:22,878 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 20:20:07] 2025-12-02 19:19:22,878 | INFO     | ready for new job
[2025-12-02 20:20:07] 2025-12-02 19:19:22,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 20:20:07] 2025-12-02 19:19:22,883 | INFO     | ***************************************
[2025-12-02 20:20:07] 2025-12-02 19:19:22,883 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 20:20:07] 2025-12-02 19:19:22,883 | INFO     | ***************************************
[2025-12-02 20:20:07] 2025-12-02 19:19:22,883 | INFO     | 
[2025-12-02 20:20:07] 2025-12-02 19:19:22,884 | INFO     | pilot is running in a VM
[2025-12-02 20:20:07] 2025-12-02 19:19:22,884 | INFO     | architecture information:
[2025-12-02 20:20:07] 2025-12-02 19:19:22,899 | INFO     | executing command: cat /etc/os-release
[2025-12-02 20:20:07] 2025-12-02 19:19:23,218 | INFO     | cat /etc/os-release:
[2025-12-02 20:20:07] NAME="CentOS Linux"
[2025-12-02 20:20:07] VERSION="7 (Core)"
[2025-12-02 20:20:07] ID="centos"
[2025-12-02 20:20:07] ID_LIKE="rhel fedora"
[2025-12-02 20:20:07] VERSION_ID="7"
[2025-12-02 20:20:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 20:20:07] ANSI_COLOR="0;31"
[2025-12-02 20:20:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 20:20:07] HOME_URL="https://www.centos.org/"
[2025-12-02 20:20:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 20:20:07] 
[2025-12-02 20:20:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 20:20:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 20:20:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 20:20:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 20:20:07] 
[2025-12-02 20:20:07] 2025-12-02 19:19:23,218 | INFO     | ***************************************
[2025-12-02 20:20:07] 2025-12-02 19:19:23,722 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-12-02 20:20:07] 2025-12-02 19:19:23,983 | INFO     | sufficient remaining disk space (488919531520 B)
[2025-12-02 20:20:07] 2025-12-02 19:19:23,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 20:20:07] 2025-12-02 19:19:23,983 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 20:20:07] 2025-12-02 19:19:23,983 | INFO     | update_server=False
[2025-12-02 20:20:07] 2025-12-02 19:19:23,984 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 20:20:07] 2025-12-02 19:19:24,007 | INFO     | all data control threads have been joined
[2025-12-02 20:20:07] 2025-12-02 19:19:24,187 | INFO     | all job control threads have been joined
[2025-12-02 20:20:07] 2025-12-02 19:19:24,418 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:20:07] 2025-12-02 19:19:24,418 | INFO     | aborting loop
[2025-12-02 20:20:07] 2025-12-02 19:19:24,560 | INFO     | all payload control threads have been joined
[2025-12-02 20:20:07] 2025-12-02 19:19:24,584 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 20:20:07] 2025-12-02 19:19:24,989 | INFO     | [job] retrieve thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:25,012 | INFO     | [data] control thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:25,038 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:25,055 | INFO     | [data] copytool_in thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:25,149 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:20:07] 2025-12-02 19:19:25,192 | INFO     | [job] control thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:25,424 | INFO     | [job] job monitor thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:25,477 | INFO     | [payload] validate_post thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:25,566 | INFO     | [payload] control thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:25,644 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:26,086 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:26,155 | INFO     | [job] queue monitor thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:26,355 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:26,372 | INFO     | [payload] failed_post thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:26,432 | INFO     | [job] validate thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:26,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 20:20:07] 2025-12-02 19:19:26,591 | INFO     | [data] copytool_out thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:30,599 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 20:20:07] 2025-12-02 19:19:53,362 | INFO     | PID=572 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-12-02 20:20:07] 2025-12-02 19:19:53,362 | INFO     | .. there are 9 such processes running
[2025-12-02 20:20:07] 2025-12-02 19:19:53,363 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 20:20:07] 2025-12-02 19:19:53,363 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 20:20:07] 2025-12-02 19:19:53,363 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 20:20:07] 2025-12-02 19:19:56,467 | INFO     | [monitor] cgroup control has ended
[2025-12-02 20:20:07] 2025-12-02 19:19:58,174 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139849142245184)>', '<ExcThread(monitor, started 139848915326720)>']
[2025-12-02 20:20:07] 2025-12-02 19:19:58,394 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 20:20:07] 2025-12-02 19:19:58,394 | INFO     | [monitor] control thread has ended
[2025-12-02 20:20:07] 2025-12-02 19:20:03,200 | INFO     | all workflow threads have been joined
[2025-12-02 20:20:07] 2025-12-02 19:20:03,200 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 20:20:07] 2025-12-02 19:20:03,200 | INFO     | traces error code: 0
[2025-12-02 20:20:07] 2025-12-02 19:20:03,200 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 20:20:07] 2025-12-02 19:20:03,493 [wrapper] ==== pilot stdout END ====
[2025-12-02 20:20:07] 2025-12-02 19:20:03,575 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 20:20:07] 2025-12-02 19:20:03,640 [wrapper] pilotpid: 572
[2025-12-02 20:20:07] 2025-12-02 19:20:03,753 [wrapper] Pilot exit status: 0
[2025-12-02 20:20:07] 2025-12-02 19:20:04,175 [wrapper] pandaids: 6900263516
[2025-12-02 20:20:07] 2025-12-02 19:20:05,057 [wrapper] cleanup supervisor_pilot 21563 573
[2025-12-02 20:20:07] 2025-12-02 19:20:05,110 [wrapper] Test setup, not cleaning
[2025-12-02 20:20:07] 2025-12-02 19:20:05,159 [wrapper] apfmon messages muted
[2025-12-02 20:20:07] 2025-12-02 19:20:05,246 [wrapper] ==== wrapper stdout END ====
[2025-12-02 20:20:07] 2025-12-02 19:20:05,335 [wrapper] ==== wrapper stderr END ====
[2025-12-02 20:20:07]  *** Error codes and diagnostics ***
[2025-12-02 20:20:07]     "exeErrorCode": 0,
[2025-12-02 20:20:07]     "exeErrorDiag": "",
[2025-12-02 20:20:07]     "pilotErrorCode": 0,
[2025-12-02 20:20:07]     "pilotErrorDiag": "",
[2025-12-02 20:20:07]  *** Listing of results directory ***
[2025-12-02 20:20:07] total 1336820
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc    576529 Nov 27 17:16 pilot3.tar.gz
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc      5112 Nov 27 17:17 queuedata.json
[2025-12-02 20:20:07] -rwx------. 1 boinc boinc     36292 Nov 27 17:17 runpilot2-wrapper.sh
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc       100 Dec  1 22:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 20:20:07] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 22:14 run_atlas
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc       105 Dec  1 22:14 job.xml
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc      6393 Dec  1 22:14 init_data.xml
[2025-12-02 20:20:07] -rw-r--r--. 2 boinc boinc 409852327 Dec  1 22:14 EVNT.47483658._004379.pool.root.1
[2025-12-02 20:20:07] -rw-r--r--. 2 boinc boinc     15847 Dec  1 22:14 start_atlas.sh
[2025-12-02 20:20:07] drwxrwx--x. 2 boinc boinc        68 Dec  1 22:14 shared
[2025-12-02 20:20:07] -rw-r--r--. 2 boinc boinc    590108 Dec  1 22:14 input.tar.gz
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc         0 Dec  1 22:14 boinc_lockfile
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc      2787 Dec  1 22:14 pandaJob.out
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc    992004 Dec  1 22:18 agis_schedconf.cvmfs.json
[2025-12-02 20:20:07] drwx------. 5 boinc boinc      4096 Dec  1 22:18 pilot3
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc       533 Dec  2 19:56 boinc_task_state.xml
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc 929195610 Dec  2 20:15 HITS.47556185._001424.pool.root.1
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc      1031 Dec  2 20:17 memory_monitor_summary.json
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc   1516240 Dec  2 20:17 agis_ddmendpoints.agis.ALL.json
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc   2391634 Dec  2 20:17 log.47556185._001424.job.log.tgz.1
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc      8628 Dec  2 20:19 heartbeat.json
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc        95 Dec  2 20:19 pilot_heartbeat.json
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc      8192 Dec  2 20:19 boinc_mmap_file
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc        29 Dec  2 20:19 wrapper_checkpoint.txt
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc      4883 Dec  2 20:20 pilotlog.txt
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc  10582113 Dec  2 20:20 log.47556185._001424.job.log.1
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc       353 Dec  2 20:20 output.list
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc       620 Dec  2 20:20 runtime_log
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc  12994560 Dec  2 20:20 result.tar.gz
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc      8833 Dec  2 20:20 runtime_log.err
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc       662 Dec  2 20:20 FUTNDmarti8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjkKKDmgdouym.diag
[2025-12-02 20:20:07] -rw-r--r--. 1 boinc boinc     21480 Dec  2 20:20 stderr.txt
[2025-12-02 20:20:07] HITS file was successfully produced:
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc 929195610 Dec  2 20:15 shared/HITS.pool.root.1
[2025-12-02 20:20:07]  *** Contents of shared directory: ***
[2025-12-02 20:20:07] total 1320956
[2025-12-02 20:20:07] -rw-r--r--. 2 boinc boinc 409852327 Dec  1 22:14 ATLAS.root_0
[2025-12-02 20:20:07] -rw-r--r--. 2 boinc boinc     15847 Dec  1 22:14 start_atlas.sh
[2025-12-02 20:20:07] -rw-r--r--. 2 boinc boinc    590108 Dec  1 22:14 input.tar.gz
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc 929195610 Dec  2 20:15 HITS.pool.root.1
[2025-12-02 20:20:07] -rw-------. 1 boinc boinc  12994560 Dec  2 20:20 result.tar.gz
20:20:08 (29225): run_atlas exited; CPU time 294132.288714
20:20:08 (29225): called boinc_finish(0)

</stderr_txt>
]]>

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