Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:40:18 (3514393): wrapper (7.7.26015): starting
14:40:18 (3514393): wrapper: running run_atlas (--nthreads 9)
[2025-11-30 14:40:18] Arguments: --nthreads 9
[2025-11-30 14:40:18] Threads: 9
[2025-11-30 14:40:18] Checking for CVMFS
[2025-11-30 14:40:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 14:40:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 14:40:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 14:40:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 14:40:19] 2.13.2.0 5795 40038 236956 153492 0 225 21642036 39288832 9101 16776704 0 31111909 99.556 33959091 36861 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 14:40:19] CVMFS is ok
[2025-11-30 14:40:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 14:40:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 14:40:19] Further information can be found at the LHC@home message board.
[2025-11-30 14:40:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 14:40:19] Checking for apptainer binary...
[2025-11-30 14:40:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 14:40:19] Running /usr/bin/apptainer --version
[2025-11-30 14:40:19] apptainer version 1.4.4-1.el9
[2025-11-30 14:40:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 14:40:19] c-210-27.aglt2.org
[2025-11-30 14:40:19] apptainer works
[2025-11-30 14:40:19] Set ATHENA_PROC_NUMBER=9
[2025-11-30 14:40:19] Set ATHENA_CORE_NUMBER=9
[2025-11-30 14:40:19] Starting ATLAS job with PandaID=6895234684
[2025-11-30 14:40:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 22:31:58]  *** The last 200 lines of the pilot log: ***
[2025-12-01 22:31:58] 2025-12-02 03:30:51,389 | INFO     | monitor loop #6751: job 0:6895234684 is in state 'finished'
[2025-12-01 22:31:58] 2025-12-02 03:30:51,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 22:31:58] 2025-12-02 03:30:52,757 | INFO     | time since job start (114605s) is within the limit (172800.0s)
[2025-12-01 22:31:58] 2025-12-02 03:30:53,941 | INFO     | monitor loop #6752: job 0:6895234684 is in state 'finished'
[2025-12-01 22:31:58] 2025-12-02 03:30:53,941 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 22:31:58] 2025-12-02 03:30:54,329 | INFO     | PID=3518148 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 22:31:58] 2025-12-02 03:30:54,329 | INFO     | .. there are 8 such processes running
[2025-12-01 22:31:58] 2025-12-02 03:30:55,330 | INFO     | time since job start (114608s) is within the limit (172800.0s)
[2025-12-01 22:31:58] 2025-12-02 03:30:56,447 | INFO     | monitor loop #6753: job 0:6895234684 is in state 'finished'
[2025-12-01 22:31:58] 2025-12-02 03:30:56,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 22:31:58] 2025-12-02 03:30:57,347 | INFO     | time since job start (114610s) is within the limit (172800.0s)
[2025-12-01 22:31:58] 2025-12-02 03:30:58,959 | INFO     | monitor loop #6754: job 0:6895234684 is in state 'finished'
[2025-12-01 22:31:58] 2025-12-02 03:30:58,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 22:31:58] 2025-12-02 03:30:59,367 | INFO     | time since job start (114612s) is within the limit (172800.0s)
[2025-12-01 22:31:58] 2025-12-02 03:31:00,964 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 22:31:58] 2025-12-02 03:31:00,993 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1623749999994
[2025-12-01 22:31:58] 2025-12-02 03:31:01,086 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895234684/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 22:31:58] 2025-12-02 03:31:01,086 | INFO     | extracted standard info from prmon json
[2025-12-01 22:31:58] 2025-12-02 03:31:01,086 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 22:31:58] 2025-12-02 03:31:01,105 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 22:31:58] 2025-12-02 03:31:01,298 | INFO     | fitting pss+swap vs Time
[2025-12-01 22:31:58] 2025-12-02 03:31:01,301 | INFO     | sum of square deviations: 2050386908447.5503
[2025-12-01 22:31:58] 2025-12-02 03:31:01,386 | INFO     | time since job start (114614s) is within the limit (172800.0s)
[2025-12-01 22:31:58] 2025-12-02 03:31:01,477 | INFO     | monitor loop #6755: job 0:6895234684 is in state 'finished'
[2025-12-01 22:31:58] 2025-12-02 03:31:01,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 22:31:58] 2025-12-02 03:31:01,494 | INFO     | sum of deviations: 5352728188306.901
[2025-12-01 22:31:58] 2025-12-02 03:31:01,494 | INFO     | mean x: 1764588954.9035695
[2025-12-01 22:31:58] 2025-12-02 03:31:01,494 | INFO     | mean y: 3666065.3308470966
[2025-12-01 22:31:58] 2025-12-02 03:31:01,495 | INFO     | intersect: -4602959640.662812
[2025-12-01 22:31:58] 2025-12-02 03:31:01,501 | INFO     | chi2: 18.785159256590983
[2025-12-01 22:31:58] 2025-12-02 03:31:01,508 | INFO     | sum of square deviations: 2034046948987.8228
[2025-12-01 22:31:58] 2025-12-02 03:31:01,696 | INFO     | sum of deviations: 6233344577949.883
[2025-12-01 22:31:58] 2025-12-02 03:31:01,705 | INFO     | mean x: 1764588802.4193375
[2025-12-01 22:31:58] 2025-12-02 03:31:01,705 | INFO     | mean y: 3674282.638354701
[2025-12-01 22:31:58] 2025-12-02 03:31:01,705 | INFO     | intersect: -5403914784.73548
[2025-12-01 22:31:58] 2025-12-02 03:31:01,708 | INFO     | chi2: 14.983290871815145
[2025-12-01 22:31:58] 2025-12-02 03:31:01,708 | INFO     | current chi2=14.983290871815145 (change=20.238680614016676 %)
[2025-12-01 22:31:58] 2025-12-02 03:31:01,708 | INFO     | right removable region: 1871
[2025-12-01 22:31:58] 2025-12-02 03:31:01,713 | INFO     | sum of square deviations: 2034040189577.8215
[2025-12-01 22:31:58] 2025-12-02 03:31:02,120 | INFO     | sum of deviations: 4504283499488.5205
[2025-12-01 22:31:58] 2025-12-02 03:31:02,121 | INFO     | mean x: 1764589107.4193375
[2025-12-01 22:31:58] 2025-12-02 03:31:02,121 | INFO     | mean y: 3673979.1292735045
[2025-12-01 22:31:58] 2025-12-02 03:31:02,121 | INFO     | intersect: -3903923147.34432
[2025-12-01 22:31:58] 2025-12-02 03:31:02,129 | INFO     | chi2: 15.529592330169557
[2025-12-01 22:31:58] 2025-12-02 03:31:02,129 | INFO     | current chi2=15.529592330169557 (change=17.330526092181916 %)
[2025-12-01 22:31:58] 2025-12-02 03:31:02,129 | INFO     | left removable region: 10
[2025-12-01 22:31:58] 2025-12-02 03:31:02,144 | INFO     | sum of square deviations: 1998394415266.615
[2025-12-01 22:31:58] 2025-12-02 03:31:02,422 | INFO     | sum of deviations: 5306873965837.244
[2025-12-01 22:31:58] 2025-12-02 03:31:02,422 | INFO     | mean x: 1764589076.9414294
[2025-12-01 22:31:58] 2025-12-02 03:31:02,422 | INFO     | mean y: 3686161.3691563676
[2025-12-01 22:31:58] 2025-12-02 03:31:02,423 | INFO     | intersect: -4682301630.2710085
[2025-12-01 22:31:58] 2025-12-02 03:31:02,433 | INFO     | chi2: 10.724583233057947
[2025-12-01 22:31:58] 2025-12-02 03:31:02,434 | INFO     | current memory leak: 2.66 B/s (using 1861 data points, chi2=10.72)
[2025-12-01 22:31:58] 2025-12-02 03:31:02,444 | INFO     | could have reported an average CPU frequency of 2600 MHz (65 samples)
[2025-12-01 22:31:58] 2025-12-02 03:31:02,444 | INFO     | ..............................
[2025-12-01 22:31:58] 2025-12-02 03:31:02,444 | INFO     | . Timing measurements:
[2025-12-01 22:31:58] 2025-12-02 03:31:02,445 | INFO     | . get job = 0 s
[2025-12-01 22:31:58] 2025-12-02 03:31:02,445 | INFO     | . initial setup = 3 s
[2025-12-01 22:31:58] 2025-12-02 03:31:02,445 | INFO     | . payload setup = 29 s
[2025-12-01 22:31:58] 2025-12-02 03:31:02,445 | INFO     | . stage-in = 0 s
[2025-12-01 22:31:58] 2025-12-02 03:31:02,445 | INFO     | . payload execution = 114480 s
[2025-12-01 22:31:58] 2025-12-02 03:31:02,445 | INFO     | . stage-out = 14 s
[2025-12-01 22:31:58] 2025-12-02 03:31:02,445 | INFO     | . log creation = 5 s
[2025-12-01 22:31:58] 2025-12-02 03:31:02,445 | INFO     | ..............................
[2025-12-01 22:31:58] 2025-12-02 03:31:03,108 | INFO     | 
[2025-12-01 22:31:58] 2025-12-02 03:31:03,108 | INFO     | job summary report
[2025-12-01 22:31:58] 2025-12-02 03:31:03,108 | INFO     | --------------------------------------------------
[2025-12-01 22:31:58] 2025-12-02 03:31:03,108 | INFO     | PanDA job id: 6895234684
[2025-12-01 22:31:58] 2025-12-02 03:31:03,108 | INFO     | task id: 47530725
[2025-12-01 22:31:58] 2025-12-02 03:31:03,108 | INFO     | errors: (none)
[2025-12-01 22:31:58] 2025-12-02 03:31:03,108 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 22:31:58] 2025-12-02 03:31:03,113 | INFO     | pilot state: finished 
[2025-12-01 22:31:58] 2025-12-02 03:31:03,113 | INFO     | transexitcode: 0
[2025-12-01 22:31:58] 2025-12-02 03:31:03,113 | INFO     | exeerrorcode: 0
[2025-12-01 22:31:58] 2025-12-02 03:31:03,113 | INFO     | exeerrordiag: 
[2025-12-01 22:31:58] 2025-12-02 03:31:03,113 | INFO     | exitcode: 0
[2025-12-01 22:31:58] 2025-12-02 03:31:03,113 | INFO     | exitmsg: OK
[2025-12-01 22:31:58] 2025-12-02 03:31:03,113 | INFO     | cpuconsumptiontime: 256911 s
[2025-12-01 22:31:58] 2025-12-02 03:31:03,113 | INFO     | nevents: 1000
[2025-12-01 22:31:58] 2025-12-02 03:31:03,114 | INFO     | neventsw: 0
[2025-12-01 22:31:58] 2025-12-02 03:31:03,114 | INFO     | pid: 3526448
[2025-12-01 22:31:58] 2025-12-02 03:31:03,114 | INFO     | pgrp: 3526448
[2025-12-01 22:31:58] 2025-12-02 03:31:03,114 | INFO     | corecount: 9
[2025-12-01 22:31:58] 2025-12-02 03:31:03,114 | INFO     | event service: False
[2025-12-01 22:31:58] 2025-12-02 03:31:03,114 | INFO     | sizes: {0: 2284291, 1: 2284490, 2: 2284490, 13: 2284518, 16: 2284836, 23: 2284864, 114515: 2381329, 114530: 2390323, 114531: 2390379, 114579: 2390721}
[2025-12-01 22:31:58] 2025-12-02 03:31:03,114 | INFO     | --------------------------------------------------
[2025-12-01 22:31:58] 2025-12-02 03:31:03,114 | INFO     | 
[2025-12-01 22:31:58] 2025-12-02 03:31:03,114 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-01 22:31:58] 2025-12-02 03:31:03,157 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,158 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,158 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,158 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,158 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,158 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,158 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,158 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,158 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,158 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,159 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,159 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,159 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,159 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,159 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,159 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,159 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,159 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 22:31:58] 2025-12-02 03:31:03,159 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,159 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 22:31:58] 2025-12-02 03:31:03,160 | INFO     | job 6895234684 has completed (purged errors)
[2025-12-01 22:31:58] 2025-12-02 03:31:03,160 | INFO     | overall cleanup function is called
[2025-12-01 22:31:58] 2025-12-02 03:31:04,195 | INFO     | --- collectZombieJob: --- 10, [3526448]
[2025-12-01 22:31:58] 2025-12-02 03:31:04,195 | INFO     | zombie collector waiting for pid 3526448
[2025-12-01 22:31:58] 2025-12-02 03:31:04,195 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 22:31:58] 2025-12-02 03:31:04,195 | INFO     | collected zombie processes
[2025-12-01 22:31:58] 2025-12-02 03:31:04,195 | INFO     | will attempt to kill all subprocesses of pid=3526448
[2025-12-01 22:31:58] 2025-12-02 03:31:05,542 | INFO     | process IDs to be killed: [3526448] (in reverse order)
[2025-12-01 22:31:58] 2025-12-02 03:31:05,828 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 22:31:58] 2025-12-02 03:31:05,829 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 22:31:58] 2025-12-02 03:31:05,837 | INFO     | did not find any defunct processes belonging to 3526448
[2025-12-01 22:31:58] 2025-12-02 03:31:05,846 | INFO     | did not find any defunct processes belonging to 3526448
[2025-12-01 22:31:58] 2025-12-02 03:31:05,848 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 22:31:58] 2025-12-02 03:31:05,848 | INFO     | ready for new job
[2025-12-01 22:31:58] 2025-12-02 03:31:05,848 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 22:31:58] 2025-12-02 03:31:05,859 | INFO     | ***************************************
[2025-12-01 22:31:58] 2025-12-02 03:31:06,038 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 22:31:58] 2025-12-02 03:31:06,038 | INFO     | ***************************************
[2025-12-01 22:31:58] 2025-12-02 03:31:06,038 | INFO     | 
[2025-12-01 22:31:58] 2025-12-02 03:31:06,040 | INFO     | architecture information:
[2025-12-01 22:31:58] 2025-12-02 03:31:06,227 | INFO     | executing command: cat /etc/os-release
[2025-12-01 22:31:58] 2025-12-02 03:31:06,415 | INFO     | cat /etc/os-release:
[2025-12-01 22:31:58] NAME="CentOS Linux"
[2025-12-01 22:31:58] VERSION="7 (Core)"
[2025-12-01 22:31:58] ID="centos"
[2025-12-01 22:31:58] ID_LIKE="rhel fedora"
[2025-12-01 22:31:58] VERSION_ID="7"
[2025-12-01 22:31:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 22:31:58] ANSI_COLOR="0;31"
[2025-12-01 22:31:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 22:31:58] HOME_URL="https://www.centos.org/"
[2025-12-01 22:31:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 22:31:58] 
[2025-12-01 22:31:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 22:31:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 22:31:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 22:31:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 22:31:58] 
[2025-12-01 22:31:58] 2025-12-02 03:31:06,415 | INFO     | ***************************************
[2025-12-01 22:31:58] 2025-12-02 03:31:06,919 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-01 22:31:58] 2025-12-02 03:31:06,965 | INFO     | sufficient remaining disk space (49530535936 B)
[2025-12-01 22:31:58] 2025-12-02 03:31:06,966 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 22:31:58] 2025-12-02 03:31:06,966 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 22:31:58] 2025-12-02 03:31:06,966 | INFO     | update_server=False
[2025-12-01 22:31:58] 2025-12-02 03:31:06,966 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 22:31:58] 2025-12-02 03:31:06,997 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 22:31:58] 2025-12-02 03:31:07,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 22:31:58] 2025-12-02 03:31:07,515 | INFO     | aborting loop
[2025-12-01 22:31:58] 2025-12-02 03:31:07,852 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 22:31:58] 2025-12-02 03:31:07,972 | INFO     | [job] retrieve thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:08,019 | INFO     | all job control threads have been joined
[2025-12-01 22:31:58] 2025-12-02 03:31:08,028 | INFO     | all payload control threads have been joined
[2025-12-01 22:31:58] 2025-12-02 03:31:08,037 | INFO     | all data control threads have been joined
[2025-12-01 22:31:58] 2025-12-02 03:31:08,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 22:31:58] 2025-12-02 03:31:08,204 | INFO     | [data] copytool_in thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:08,389 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:08,512 | INFO     | [job] validate thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:08,521 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:08,530 | INFO     | [job] job monitor thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:08,707 | INFO     | [payload] failed_post thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:08,858 | INFO     | [job] queue monitor thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:09,024 | INFO     | [job] control thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:09,034 | INFO     | [payload] control thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:09,043 | INFO     | [data] control thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:09,067 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:09,067 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:09,176 | INFO     | [payload] validate_post thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:10,135 | INFO     | [data] copytool_out thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:11,053 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 22:31:58] 2025-12-02 03:31:24,870 | INFO     | [monitor] cgroup control has ended
[2025-12-01 22:31:58] 2025-12-02 03:31:25,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139745589544768)>', '<ExcThread(monitor, started 139745233442560)>']
[2025-12-01 22:31:58] 2025-12-02 03:31:30,224 | INFO     | all workflow threads have been joined
[2025-12-01 22:31:58] 2025-12-02 03:31:30,224 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 22:31:58] 2025-12-02 03:31:30,224 | INFO     | traces error code: 0
[2025-12-01 22:31:58] 2025-12-02 03:31:30,225 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 22:31:58] 2025-12-02 03:31:36,709 | INFO     | PID=3518148 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 22:31:58] 2025-12-02 03:31:36,709 | INFO     | .. there are 8 such processes running
[2025-12-01 22:31:58] 2025-12-02 03:31:36,710 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 22:31:58] 2025-12-02 03:31:36,710 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 22:31:58] 2025-12-02 03:31:36,710 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 22:31:58] 2025-12-02 03:31:36,710 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 22:31:58] 2025-12-02 03:31:36,710 | INFO     | [monitor] control thread has ended
[2025-12-01 22:31:58] 2025-12-02 03:31:37,253 [wrapper] ==== pilot stdout END ====
[2025-12-01 22:31:58] 2025-12-02 03:31:37,297 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 22:31:58] 2025-12-02 03:31:37,342 [wrapper] pilotpid: 3518148
[2025-12-01 22:31:58] 2025-12-02 03:31:37,372 [wrapper] Pilot exit status: 0
[2025-12-01 22:31:58] 2025-12-02 03:31:37,645 [wrapper] pandaids: 6895234684
[2025-12-01 22:31:58] 2025-12-02 03:31:38,020 [wrapper] cleanup supervisor_pilot 2098617 3518149
[2025-12-01 22:31:58] 2025-12-02 03:31:38,023 [wrapper] Test setup, not cleaning
[2025-12-01 22:31:58] 2025-12-02 03:31:38,026 [wrapper] apfmon messages muted
[2025-12-01 22:31:58] 2025-12-02 03:31:38,029 [wrapper] ==== wrapper stdout END ====
[2025-12-01 22:31:58] 2025-12-02 03:31:38,032 [wrapper] ==== wrapper stderr END ====
[2025-12-01 22:31:58]  *** Error codes and diagnostics ***
[2025-12-01 22:31:58]     "exeErrorCode": 0,
[2025-12-01 22:31:58]     "exeErrorDiag": "",
[2025-12-01 22:31:58]     "pilotErrorCode": 0,
[2025-12-01 22:31:58]     "pilotErrorDiag": "",
[2025-12-01 22:31:58]  *** Listing of results directory ***
[2025-12-01 22:31:58] total 1084616
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 05:28 queuedata.json
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 05:28 pilot3.tar.gz
[2025-12-01 22:31:58] -rwx------. 1 boincer umatlas     36292 Nov 28 05:28 runpilot2-wrapper.sh
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas       100 Nov 30 14:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 22:31:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 30 14:40 run_atlas
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas       105 Nov 30 14:40 job.xml
[2025-12-01 22:31:58] -rw-r--r--. 2 boincer umatlas 377188334 Nov 30 14:40 EVNT.47530720._000140.pool.root.1
[2025-12-01 22:31:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 14:40 start_atlas.sh
[2025-12-01 22:31:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 30 14:40 shared
[2025-12-01 22:31:58] -rw-r--r--. 2 boincer umatlas    590113 Nov 30 14:40 input.tar.gz
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas         0 Nov 30 14:40 boinc_lockfile
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas      2889 Nov 30 14:40 pandaJob.out
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas        57 Nov 30 14:40 setup.sh.local
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas    993237 Nov 30 14:40 agis_schedconf.cvmfs.json
[2025-12-01 22:31:58] drwx------. 5 boincer umatlas      4096 Nov 30 14:40 pilot3
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas       533 Dec  1 22:03 boinc_task_state.xml
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas 695120464 Dec  1 22:28 HITS.47530725._001394.pool.root.1
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas      1073 Dec  1 22:29 memory_monitor_summary.json
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas   1516240 Dec  1 22:30 agis_ddmendpoints.agis.ALL.json
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas   2941183 Dec  1 22:30 log.47530725._001394.job.log.tgz.1
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas      6663 Dec  1 22:30 init_data.xml
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas        95 Dec  1 22:30 pilot_heartbeat.json
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas     28237 Dec  1 22:31 heartbeat.json
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas       822 Dec  1 22:31 pilotlog.txt
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas  14248218 Dec  1 22:31 log.47530725._001394.job.log.1
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas       353 Dec  1 22:31 output.list
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas       620 Dec  1 22:31 runtime_log
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas  17233920 Dec  1 22:31 result.tar.gz
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas      9344 Dec  1 22:31 runtime_log.err
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas       668 Dec  1 22:31 FkOKDm8sAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcQOKDmQZZSAn.diag
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas        29 Dec  1 22:31 wrapper_checkpoint.txt
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas      8192 Dec  1 22:31 boinc_mmap_file
[2025-12-01 22:31:58] -rw-r--r--. 1 boincer umatlas     21891 Dec  1 22:31 stderr.txt
[2025-12-01 22:31:58] HITS file was successfully produced:
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas 695120464 Dec  1 22:28 shared/HITS.pool.root.1
[2025-12-01 22:31:58]  *** Contents of shared directory: ***
[2025-12-01 22:31:58] total 1064612
[2025-12-01 22:31:58] -rw-r--r--. 2 boincer umatlas 377188334 Nov 30 14:40 ATLAS.root_0
[2025-12-01 22:31:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 14:40 start_atlas.sh
[2025-12-01 22:31:58] -rw-r--r--. 2 boincer umatlas    590113 Nov 30 14:40 input.tar.gz
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas 695120464 Dec  1 22:28 HITS.pool.root.1
[2025-12-01 22:31:58] -rw-------. 1 boincer umatlas  17233920 Dec  1 22:31 result.tar.gz
22:32:00 (3514393): run_atlas exited; CPU time 258957.492477
22:32:00 (3514393): called boinc_finish(0)

</stderr_txt>
]]>

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