Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
10:34:01 (3320488): wrapper (7.7.26015): starting
10:34:01 (3320488): wrapper: running run_atlas (--nthreads 4)
[2025-12-01 10:34:01] Arguments: --nthreads 4
[2025-12-01 10:34:01] Threads: 4
[2025-12-01 10:34:01] Checking for CVMFS
[2025-12-01 10:34:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 10:34:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 10:34:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 10:34:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 10:34:01] 2.13.2.0 698859 16063 63252 153522 2 81 2420221 4096001 3380 130560 0 24904366 99.947 1539617 1073 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-01 10:34:01] CVMFS is ok
[2025-12-01 10:34:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 10:34:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-01 10:34:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-01 10:34:01] Further information can be found at the LHC@home message board.
[2025-12-01 10:34:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 10:34:01] Checking for apptainer binary...
[2025-12-01 10:34:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 10:34:01] Running /usr/bin/apptainer --version
[2025-12-01 10:34:01] apptainer version 1.4.3
[2025-12-01 10:34:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 10:34:01] Taichi-Ubuntu
[2025-12-01 10:34:01] apptainer works
[2025-12-01 10:34:01] Set ATHENA_PROC_NUMBER=4
[2025-12-01 10:34:01] Set ATHENA_CORE_NUMBER=4
[2025-12-01 10:34:01] Starting ATLAS job with PandaID=6898762332
[2025-12-01 10:34:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 22:16:20]  *** The last 200 lines of the pilot log: ***
[2025-12-01 22:16:20] 2025-12-02 03:15:18,367 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 22:16:20] 2025-12-02 03:15:19,444 | INFO     | time since job start (42065s) is within the limit (172800.0s)
[2025-12-01 22:16:20] 2025-12-02 03:15:19,598 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 22:16:20] 2025-12-02 03:15:19,606 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3179.4463124999997
[2025-12-01 22:16:20] 2025-12-02 03:15:19,614 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/9/PanDA_Pilot-6898762332/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 22:16:20] 2025-12-02 03:15:19,615 | INFO     | extracted standard info from prmon json
[2025-12-01 22:16:20] 2025-12-02 03:15:19,615 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 22:16:20] 2025-12-02 03:15:19,615 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 22:16:20] 2025-12-02 03:15:19,627 | INFO     | fitting pss+swap vs Time
[2025-12-01 22:16:20] 2025-12-02 03:15:19,628 | INFO     | sum of square deviations: 101422701640.0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,637 | INFO     | sum of deviations: 383664471561.0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,637 | INFO     | mean x: 1764624264.0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,637 | INFO     | mean y: 2287907.671988389
[2025-12-01 22:16:20] 2025-12-02 03:15:19,638 | INFO     | intersect: -6672979313.609246
[2025-12-01 22:16:20] 2025-12-02 03:15:19,638 | INFO     | chi2: 4.340594496413326
[2025-12-01 22:16:20] 2025-12-02 03:15:19,639 | INFO     | sum of square deviations: 99230641935.0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,644 | INFO     | sum of deviations: 533473580208.0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,644 | INFO     | mean x: 1764624111.5
[2025-12-01 22:16:20] 2025-12-02 03:15:19,644 | INFO     | mean y: 2298322.567251462
[2025-12-01 22:16:20] 2025-12-02 03:15:19,644 | INFO     | intersect: -9484492492.510891
[2025-12-01 22:16:20] 2025-12-02 03:15:19,645 | INFO     | chi2: 2.098101384417958
[2025-12-01 22:16:20] 2025-12-02 03:15:19,645 | INFO     | current chi2=2.098101384417958 (change=51.66327132950016 %)
[2025-12-01 22:16:20] 2025-12-02 03:15:19,645 | INFO     | sum of square deviations: 97070396780.0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,650 | INFO     | sum of deviations: 545181906665.99994
[2025-12-01 22:16:20] 2025-12-02 03:15:19,650 | INFO     | mean x: 1764623959.0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,650 | INFO     | mean y: 2299143.325478645
[2025-12-01 22:16:20] 2025-12-02 03:15:19,650 | INFO     | intersect: -9908457239.967068
[2025-12-01 22:16:20] 2025-12-02 03:15:19,651 | INFO     | chi2: 2.0145282483153855
[2025-12-01 22:16:20] 2025-12-02 03:15:19,651 | INFO     | current chi2=2.0145282483153855 (change=3.9832744367478212 %)
[2025-12-01 22:16:20] 2025-12-02 03:15:19,651 | INFO     | right removable region: 678
[2025-12-01 22:16:20] 2025-12-02 03:15:19,652 | INFO     | sum of square deviations: 99230641935.0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,657 | INFO     | sum of deviations: 251968844128.99936
[2025-12-01 22:16:20] 2025-12-02 03:15:19,657 | INFO     | mean x: 1764624416.5
[2025-12-01 22:16:20] 2025-12-02 03:15:19,657 | INFO     | mean y: 2297049.6549707605
[2025-12-01 22:16:20] 2025-12-02 03:15:19,657 | INFO     | intersect: -4478479914.768634
[2025-12-01 22:16:20] 2025-12-02 03:15:19,657 | INFO     | chi2: 2.4439761434730274
[2025-12-01 22:16:20] 2025-12-02 03:15:19,658 | INFO     | current chi2=2.4439761434730274 (change=43.694898348774394 %)
[2025-12-01 22:16:20] 2025-12-02 03:15:19,658 | INFO     | sum of square deviations: 97070396780.0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,663 | INFO     | sum of deviations: 243578567836.0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,663 | INFO     | mean x: 1764624569.0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,663 | INFO     | mean y: 2297640.7731958763
[2025-12-01 22:16:20] 2025-12-02 03:15:19,663 | INFO     | intersect: -4425671539.773083
[2025-12-01 22:16:20] 2025-12-02 03:15:19,664 | INFO     | chi2: 2.4423174898292936
[2025-12-01 22:16:20] 2025-12-02 03:15:19,664 | INFO     | current chi2=2.4423174898292936 (change=0.06786701450271534 %)
[2025-12-01 22:16:20] 2025-12-02 03:15:19,664 | INFO     | left removable region: 20
[2025-12-01 22:16:20] 2025-12-02 03:15:19,664 | INFO     | sum of square deviations: 88339533544.5
[2025-12-01 22:16:20] 2025-12-02 03:15:19,669 | INFO     | sum of deviations: 399707623786.5
[2025-12-01 22:16:20] 2025-12-02 03:15:19,669 | INFO     | mean x: 1764624538.5
[2025-12-01 22:16:20] 2025-12-02 03:15:19,669 | INFO     | mean y: 2309470.6641337387
[2025-12-01 22:16:20] 2025-12-02 03:15:19,669 | INFO     | intersect: -7982041961.346547
[2025-12-01 22:16:20] 2025-12-02 03:15:19,670 | INFO     | chi2: 0.08917953182583395
[2025-12-01 22:16:20] 2025-12-02 03:15:19,670 | INFO     | current memory leak: 4.52 B/s (using 658 data points, chi2=0.09)
[2025-12-01 22:16:20] 2025-12-02 03:15:19,671 | INFO     | could have reported an average CPU frequency of 3080 MHz (27 samples)
[2025-12-01 22:16:20] 2025-12-02 03:15:19,671 | INFO     | ..............................
[2025-12-01 22:16:20] 2025-12-02 03:15:19,671 | INFO     | . Timing measurements:
[2025-12-01 22:16:20] 2025-12-02 03:15:19,671 | INFO     | . get job = 0 s
[2025-12-01 22:16:20] 2025-12-02 03:15:19,671 | INFO     | . initial setup = 3 s
[2025-12-01 22:16:20] 2025-12-02 03:15:19,671 | INFO     | . payload setup = 6 s
[2025-12-01 22:16:20] 2025-12-02 03:15:19,671 | INFO     | . stage-in = 0 s
[2025-12-01 22:16:20] 2025-12-02 03:15:19,671 | INFO     | . payload execution = 42028 s
[2025-12-01 22:16:20] 2025-12-02 03:15:19,671 | INFO     | . stage-out = 4 s
[2025-12-01 22:16:20] 2025-12-02 03:15:19,671 | INFO     | . log creation = 0 s
[2025-12-01 22:16:20] 2025-12-02 03:15:19,671 | INFO     | ..............................
[2025-12-01 22:16:20] 2025-12-02 03:15:19,735 | INFO     | 
[2025-12-01 22:16:20] 2025-12-02 03:15:19,735 | INFO     | job summary report
[2025-12-01 22:16:20] 2025-12-02 03:15:19,735 | INFO     | --------------------------------------------------
[2025-12-01 22:16:20] 2025-12-02 03:15:19,735 | INFO     | PanDA job id: 6898762332
[2025-12-01 22:16:20] 2025-12-02 03:15:19,735 | INFO     | task id: 47556161
[2025-12-01 22:16:20] 2025-12-02 03:15:19,735 | INFO     | errors: (none)
[2025-12-01 22:16:20] 2025-12-02 03:15:19,735 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 22:16:20] 2025-12-02 03:15:19,736 | INFO     | pilot state: finished 
[2025-12-01 22:16:20] 2025-12-02 03:15:19,736 | INFO     | transexitcode: 0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,736 | INFO     | exeerrorcode: 0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,736 | INFO     | exeerrordiag: 
[2025-12-01 22:16:20] 2025-12-02 03:15:19,736 | INFO     | exitcode: 0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,736 | INFO     | exitmsg: OK
[2025-12-01 22:16:20] 2025-12-02 03:15:19,736 | INFO     | cpuconsumptiontime: 166971 s
[2025-12-01 22:16:20] 2025-12-02 03:15:19,736 | INFO     | nevents: 1000
[2025-12-01 22:16:20] 2025-12-02 03:15:19,736 | INFO     | neventsw: 0
[2025-12-01 22:16:20] 2025-12-02 03:15:19,736 | INFO     | pid: 3333312
[2025-12-01 22:16:20] 2025-12-02 03:15:19,736 | INFO     | pgrp: 3333312
[2025-12-01 22:16:20] 2025-12-02 03:15:19,736 | INFO     | corecount: 4
[2025-12-01 22:16:20] 2025-12-02 03:15:19,737 | INFO     | event service: False
[2025-12-01 22:16:20] 2025-12-02 03:15:19,737 | INFO     | sizes: {0: 2284329, 5: 2284591, 11: 2284647, 42038: 2328848, 42043: 2337870, 42046: 2337926, 42051: 2338300}
[2025-12-01 22:16:20] 2025-12-02 03:15:19,737 | INFO     | --------------------------------------------------
[2025-12-01 22:16:20] 2025-12-02 03:15:19,737 | INFO     | 
[2025-12-01 22:16:20] 2025-12-02 03:15:19,737 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/9
[2025-12-01 22:16:20] 2025-12-02 03:15:19,761 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,761 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,761 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,761 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,761 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,761 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,761 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,761 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,761 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,761 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,762 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,762 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,762 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,762 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,762 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,762 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,762 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,762 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 22:16:20] 2025-12-02 03:15:19,762 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,762 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 22:16:20] 2025-12-02 03:15:19,762 | INFO     | job 6898762332 has completed (purged errors)
[2025-12-01 22:16:20] 2025-12-02 03:15:19,763 | INFO     | overall cleanup function is called
[2025-12-01 22:16:20] 2025-12-02 03:15:20,778 | INFO     | --- collectZombieJob: --- 10, [3333312]
[2025-12-01 22:16:20] 2025-12-02 03:15:20,779 | INFO     | zombie collector waiting for pid 3333312
[2025-12-01 22:16:20] 2025-12-02 03:15:20,779 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 22:16:20] 2025-12-02 03:15:20,779 | INFO     | collected zombie processes
[2025-12-01 22:16:20] 2025-12-02 03:15:20,779 | INFO     | will attempt to kill all subprocesses of pid=3333312
[2025-12-01 22:16:20] 2025-12-02 03:15:21,001 | INFO     | process IDs to be killed: [3333312] (in reverse order)
[2025-12-01 22:16:20] 2025-12-02 03:15:21,071 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 22:16:20] 2025-12-02 03:15:21,071 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 22:16:20] 2025-12-02 03:15:21,078 | INFO     | did not find any defunct processes belonging to 3333312
[2025-12-01 22:16:20] 2025-12-02 03:15:21,083 | INFO     | did not find any defunct processes belonging to 3333312
[2025-12-01 22:16:20] 2025-12-02 03:15:21,084 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 22:16:20] 2025-12-02 03:15:21,085 | INFO     | ready for new job
[2025-12-01 22:16:20] 2025-12-02 03:15:21,085 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 22:16:20] 2025-12-02 03:15:21,090 | INFO     | ***************************************
[2025-12-01 22:16:20] 2025-12-02 03:15:21,090 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 22:16:20] 2025-12-02 03:15:21,090 | INFO     | ***************************************
[2025-12-01 22:16:20] 2025-12-02 03:15:21,090 | INFO     | 
[2025-12-01 22:16:20] 2025-12-02 03:15:21,093 | INFO     | architecture information:
[2025-12-01 22:16:20] 2025-12-02 03:15:21,094 | INFO     | executing command: cat /etc/os-release
[2025-12-01 22:16:20] 2025-12-02 03:15:21,113 | INFO     | cat /etc/os-release:
[2025-12-01 22:16:20] NAME="CentOS Linux"
[2025-12-01 22:16:20] VERSION="7 (Core)"
[2025-12-01 22:16:20] ID="centos"
[2025-12-01 22:16:20] ID_LIKE="rhel fedora"
[2025-12-01 22:16:20] VERSION_ID="7"
[2025-12-01 22:16:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 22:16:20] ANSI_COLOR="0;31"
[2025-12-01 22:16:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 22:16:20] HOME_URL="https://www.centos.org/"
[2025-12-01 22:16:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 22:16:20] 
[2025-12-01 22:16:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 22:16:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 22:16:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 22:16:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 22:16:20] 
[2025-12-01 22:16:20] 2025-12-02 03:15:21,113 | INFO     | ***************************************
[2025-12-01 22:16:20] 2025-12-02 03:15:21,616 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/9
[2025-12-01 22:16:20] 2025-12-02 03:15:21,637 | INFO     | sufficient remaining disk space (390139478016 B)
[2025-12-01 22:16:20] 2025-12-02 03:15:21,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 22:16:20] 2025-12-02 03:15:21,638 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 22:16:20] 2025-12-02 03:15:21,638 | INFO     | update_server=False
[2025-12-01 22:16:20] 2025-12-02 03:15:21,638 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 22:16:20] 2025-12-02 03:15:21,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 22:16:20] 2025-12-02 03:15:21,639 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 22:16:20] 2025-12-02 03:15:21,875 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 22:16:20] 2025-12-02 03:15:21,875 | INFO     | aborting loop
[2025-12-01 22:16:20] 2025-12-02 03:15:21,953 | INFO     | all data control threads have been joined
[2025-12-01 22:16:20] 2025-12-02 03:15:22,415 | INFO     | all job control threads have been joined
[2025-12-01 22:16:20] 2025-12-02 03:15:22,607 | INFO     | all payload control threads have been joined
[2025-12-01 22:16:20] 2025-12-02 03:15:22,643 | INFO     | [job] retrieve thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:22,644 | INFO     | [job] queue monitor thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:22,708 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 22:16:20] 2025-12-02 03:15:22,819 | INFO     | [payload] failed_post thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:22,881 | INFO     | [job] job monitor thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:22,959 | INFO     | [data] control thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:23,030 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:23,419 | INFO     | [job] control thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:23,566 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:23,612 | INFO     | [payload] control thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:23,637 | INFO     | [job] validate thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:23,704 | INFO     | [data] copytool_in thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:23,713 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:24,118 | INFO     | [payload] validate_post thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:24,714 | INFO     | [data] copytool_out thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:25,643 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:32,173 | INFO     | job.realtimelogging is not enabled
[2025-12-01 22:16:20] 2025-12-02 03:15:33,178 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 22:16:20] 2025-12-02 03:15:52,755 | INFO     | PID=3324408 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 22:16:20] 2025-12-02 03:15:52,755 | INFO     | .. there are 5 such processes running
[2025-12-01 22:16:20] 2025-12-02 03:15:52,755 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 22:16:20] 2025-12-02 03:15:52,755 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 22:16:20] 2025-12-02 03:15:52,755 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 22:16:20] 2025-12-02 03:16:13,669 | INFO     | [monitor] cgroup control has ended
[2025-12-01 22:16:20] 2025-12-02 03:16:14,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131421067540288)>', '<ExcThread(monitor, started 131420219500288)>']
[2025-12-01 22:16:20] 2025-12-02 03:16:14,855 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 22:16:20] 2025-12-02 03:16:14,856 | INFO     | [monitor] control thread has ended
[2025-12-01 22:16:20] 2025-12-02 03:16:19,696 | INFO     | all workflow threads have been joined
[2025-12-01 22:16:20] 2025-12-02 03:16:19,697 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 22:16:20] 2025-12-02 03:16:19,697 | INFO     | traces error code: 0
[2025-12-01 22:16:20] 2025-12-02 03:16:19,697 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 22:16:20] 2025-12-02 03:16:19,825 [wrapper] ==== pilot stdout END ====
[2025-12-01 22:16:20] 2025-12-02 03:16:19,829 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 22:16:20] 2025-12-02 03:16:19,832 [wrapper] pilotpid: 3324408
[2025-12-01 22:16:20] 2025-12-02 03:16:19,836 [wrapper] Pilot exit status: 0
[2025-12-01 22:16:20] 2025-12-02 03:16:19,847 [wrapper] pandaids: 6898762332
[2025-12-01 22:16:20] 2025-12-02 03:16:19,907 [wrapper] cleanup supervisor_pilot 3857326 3324409
[2025-12-01 22:16:20] 2025-12-02 03:16:19,911 [wrapper] Test setup, not cleaning
[2025-12-01 22:16:20] 2025-12-02 03:16:19,914 [wrapper] apfmon messages muted
[2025-12-01 22:16:20] 2025-12-02 03:16:19,917 [wrapper] ==== wrapper stdout END ====
[2025-12-01 22:16:20] 2025-12-02 03:16:19,919 [wrapper] ==== wrapper stderr END ====
[2025-12-01 22:16:20]  *** Error codes and diagnostics ***
[2025-12-01 22:16:20]     "exeErrorCode": 0,
[2025-12-01 22:16:20]     "exeErrorDiag": "",
[2025-12-01 22:16:20]     "pilotErrorCode": 0,
[2025-12-01 22:16:20]     "pilotErrorDiag": "",
[2025-12-01 22:16:20]  *** Listing of results directory ***
[2025-12-01 22:16:20] total 1322444
[2025-12-01 22:16:20] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 26 18:42 pilot3.tar.gz
[2025-12-01 22:16:20] -rwx------ 1 whitlerd whitlerd     36292 Nov 26 18:56 runpilot2-wrapper.sh
[2025-12-01 22:16:20] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 26 18:56 queuedata.json
[2025-12-01 22:16:20] -rw-rw-r-- 1 whitlerd whitlerd       100 Dec  1 10:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 22:16:20] -rwxr-xr-x 1 whitlerd whitlerd      7986 Dec  1 10:34 run_atlas
[2025-12-01 22:16:20] -rw-rw-r-- 1 whitlerd whitlerd       105 Dec  1 10:34 job.xml
[2025-12-01 22:16:20] -rw-r--r-- 2 whitlerd whitlerd 410613976 Dec  1 10:34 EVNT.47483658._002746.pool.root.1
[2025-12-01 22:16:20] -rw-r--r-- 2 whitlerd whitlerd    590100 Dec  1 10:34 input.tar.gz
[2025-12-01 22:16:20] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec  1 10:34 start_atlas.sh
[2025-12-01 22:16:20] drwxrwx--x 2 whitlerd whitlerd      4096 Dec  1 10:34 shared
[2025-12-01 22:16:20] -rw-rw-r-- 1 whitlerd whitlerd      9369 Dec  1 10:34 init_data.xml
[2025-12-01 22:16:20] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec  1 10:34 boinc_setup_complete
[2025-12-01 22:16:20] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec  1 10:34 boinc_lockfile
[2025-12-01 22:16:20] -rw-rw-r-- 1 whitlerd whitlerd      2786 Dec  1 10:34 pandaJob.out
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd    992142 Dec  1 10:34 agis_schedconf.cvmfs.json
[2025-12-01 22:16:20] drwx------ 5 whitlerd whitlerd      4096 Dec  1 10:34 pilot3
[2025-12-01 22:16:20] -rw-rw-r-- 1 whitlerd whitlerd       533 Dec  1 22:08 boinc_task_state.xml
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd 924694311 Dec  1 22:14 HITS.47556161._007287.pool.root.1
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd      1044 Dec  1 22:15 memory_monitor_summary.json
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd        95 Dec  1 22:15 pilot_heartbeat.json
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd   1516240 Dec  1 22:15 agis_ddmendpoints.agis.ALL.json
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd   1489431 Dec  1 22:15 log.47556161._007287.job.log.tgz.1
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd      8585 Dec  1 22:15 heartbeat.json
[2025-12-01 22:16:20] -rw-rw-r-- 1 whitlerd whitlerd      8192 Dec  1 22:16 boinc_mmap_file
[2025-12-01 22:16:20] -rw-rw-r-- 1 whitlerd whitlerd        29 Dec  1 22:16 wrapper_checkpoint.txt
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd      4910 Dec  1 22:16 pilotlog.txt
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd   5986640 Dec  1 22:16 log.47556161._007287.job.log.1
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd       353 Dec  1 22:16 output.list
[2025-12-01 22:16:20] -rw-rw-r-- 1 whitlerd whitlerd       620 Dec  1 22:16 runtime_log
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd   7495680 Dec  1 22:16 result.tar.gz
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd       658 Dec  1 22:16 ZeOODmIYei8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdRNKDmZMX64m.diag
[2025-12-01 22:16:20] -rw-rw-r-- 1 whitlerd whitlerd      9026 Dec  1 22:16 runtime_log.err
[2025-12-01 22:16:20] -rw-rw-r-- 1 whitlerd whitlerd     21338 Dec  1 22:16 stderr.txt
[2025-12-01 22:16:20] HITS file was successfully produced:
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd 924694311 Dec  1 22:14 shared/HITS.pool.root.1
[2025-12-01 22:16:20]  *** Contents of shared directory: ***
[2025-12-01 22:16:20] total 1311940
[2025-12-01 22:16:20] -rw-r--r-- 2 whitlerd whitlerd 410613976 Dec  1 10:34 ATLAS.root_0
[2025-12-01 22:16:20] -rw-r--r-- 2 whitlerd whitlerd    590100 Dec  1 10:34 input.tar.gz
[2025-12-01 22:16:20] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec  1 10:34 start_atlas.sh
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd 924694311 Dec  1 22:14 HITS.pool.root.1
[2025-12-01 22:16:20] -rw------- 1 whitlerd whitlerd   7495680 Dec  1 22:16 result.tar.gz
22:16:21 (3320488): run_atlas exited; CPU time 166937.098391
22:16:21 (3320488): called boinc_finish(0)

</stderr_txt>
]]>

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