Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:29:57 (4271): wrapper (7.7.26015): starting
05:29:57 (4271): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 05:29:57] Arguments: --nthreads 8
[2025-12-02 05:29:57] Threads: 8
[2025-12-02 05:29:57] Checking for CVMFS
[2025-12-02 05:29:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 05:29:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 05:29:59] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 05:30:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 05:30:00] 2.11.2.0 18053 180337 137404 153544 0 84 15896855 25165825 2504 130560 11 60087627 99.903 28767344 2205 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 05:30:00] CVMFS is ok
[2025-12-02 05:30:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 05:30:00] Checking for apptainer binary...
[2025-12-02 05:30:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 05:30:00] Running /usr/bin/apptainer --version
[2025-12-02 05:30:00] apptainer version 1.3.2-1.el7
[2025-12-02 05:30:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 05:30:28] cg-vwn306.simple-grid.lan
[2025-12-02 05:30:28] apptainer works
[2025-12-02 05:30:28] Set ATHENA_PROC_NUMBER=8
[2025-12-02 05:30:28] Set ATHENA_CORE_NUMBER=8
[2025-12-02 05:30:28] Starting ATLAS job with PandaID=6896556868
[2025-12-02 05:30:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 05:16:15]  *** The last 200 lines of the pilot log: ***
[2025-12-03 05:16:15] 2025-12-03 04:15:28,792 | INFO     | time since job start (85265s) is within the limit (172800.0s)
[2025-12-03 05:16:15] 2025-12-03 04:15:29,947 | INFO     | PID=8068 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 05:16:15] 2025-12-03 04:15:29,947 | INFO     | .. there are 9 such processes running
[2025-12-03 05:16:15] 2025-12-03 04:15:30,294 | INFO     | monitor loop #5767: job 0:6896556868 is in state 'finished'
[2025-12-03 05:16:15] 2025-12-03 04:15:30,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:16:15] 2025-12-03 04:15:30,949 | INFO     | time since job start (85267s) is within the limit (172800.0s)
[2025-12-03 05:16:15] 2025-12-03 04:15:32,798 | INFO     | monitor loop #5768: job 0:6896556868 is in state 'finished'
[2025-12-03 05:16:15] 2025-12-03 04:15:32,798 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:16:15] 2025-12-03 04:15:32,961 | INFO     | time since job start (85269s) is within the limit (172800.0s)
[2025-12-03 05:16:15] 2025-12-03 04:15:34,968 | INFO     | time since job start (85271s) is within the limit (172800.0s)
[2025-12-03 05:16:15] 2025-12-03 04:15:35,307 | INFO     | monitor loop #5769: job 0:6896556868 is in state 'finished'
[2025-12-03 05:16:15] 2025-12-03 04:15:35,307 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:16:15] 2025-12-03 04:15:36,975 | INFO     | time since job start (85273s) is within the limit (172800.0s)
[2025-12-03 05:16:15] 2025-12-03 04:15:37,813 | INFO     | monitor loop #5770: job 0:6896556868 is in state 'finished'
[2025-12-03 05:16:15] 2025-12-03 04:15:37,813 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 05:16:15] 2025-12-03 04:15:38,287 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 05:16:15] 2025-12-03 04:15:38,288 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-12-03 05:16:15] 2025-12-03 04:15:38,289 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6896556868/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 05:16:15] 2025-12-03 04:15:38,290 | INFO     | extracted standard info from prmon json
[2025-12-03 05:16:15] 2025-12-03 04:15:38,290 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 05:16:15] 2025-12-03 04:15:38,290 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 05:16:15] 2025-12-03 04:15:38,319 | INFO     | fitting pss+swap vs Time
[2025-12-03 05:16:15] 2025-12-03 04:15:38,322 | INFO     | sum of square deviations: 829175978118.4692
[2025-12-03 05:16:15] 2025-12-03 04:15:38,408 | INFO     | sum of deviations: 2987738700380.236
[2025-12-03 05:16:15] 2025-12-03 04:15:38,409 | INFO     | mean x: 1764692898.6433718
[2025-12-03 05:16:15] 2025-12-03 04:15:38,409 | INFO     | mean y: 2839785.7701729108
[2025-12-03 05:16:15] 2025-12-03 04:15:38,409 | INFO     | intersect: -6355811944.019417
[2025-12-03 05:16:15] 2025-12-03 04:15:38,411 | INFO     | chi2: 23.778609525797904
[2025-12-03 05:16:15] 2025-12-03 04:15:38,413 | INFO     | sum of square deviations: 820247866831.9097
[2025-12-03 05:16:15] 2025-12-03 04:15:38,492 | INFO     | sum of deviations: 3456900033662.6147
[2025-12-03 05:16:15] 2025-12-03 04:15:38,492 | INFO     | mean x: 1764692746.1475055
[2025-12-03 05:16:15] 2025-12-03 04:15:38,492 | INFO     | mean y: 2847798.3499638466
[2025-12-03 05:16:15] 2025-12-03 04:15:38,493 | INFO     | intersect: -7434375338.996652
[2025-12-03 05:16:15] 2025-12-03 04:15:38,494 | INFO     | chi2: 20.441752810215085
[2025-12-03 05:16:15] 2025-12-03 04:15:38,494 | INFO     | current chi2=20.441752810215085 (change=14.033018675724474 %)
[2025-12-03 05:16:15] 2025-12-03 04:15:38,495 | INFO     | right removable region: 1382
[2025-12-03 05:16:15] 2025-12-03 04:15:38,496 | INFO     | sum of square deviations: 820246898761.9087
[2025-12-03 05:16:15] 2025-12-03 04:15:38,555 | INFO     | sum of deviations: 2410744922860.1797
[2025-12-03 05:16:15] 2025-12-03 04:15:38,555 | INFO     | mean x: 1764693051.1475055
[2025-12-03 05:16:15] 2025-12-03 04:15:38,555 | INFO     | mean y: 2849639.9060014463
[2025-12-03 05:16:15] 2025-12-03 04:15:38,555 | INFO     | intersect: -5183667760.991058
[2025-12-03 05:16:15] 2025-12-03 04:15:38,557 | INFO     | chi2: 19.15343913231597
[2025-12-03 05:16:15] 2025-12-03 04:15:38,557 | INFO     | current chi2=19.15343913231597 (change=19.450970791475385 %)
[2025-12-03 05:16:15] 2025-12-03 04:15:38,557 | INFO     | left removable region: 10
[2025-12-03 05:16:15] 2025-12-03 04:15:38,559 | INFO     | sum of square deviations: 800830188705.3091
[2025-12-03 05:16:15] 2025-12-03 04:15:38,628 | INFO     | sum of deviations: 2487846064697.732
[2025-12-03 05:16:15] 2025-12-03 04:15:38,629 | INFO     | mean x: 1764693020.6567056
[2025-12-03 05:16:15] 2025-12-03 04:15:38,629 | INFO     | mean y: 2867986.7849854226
[2025-12-03 05:16:15] 2025-12-03 04:15:38,629 | INFO     | intersect: -5479298705.679555
[2025-12-03 05:16:15] 2025-12-03 04:15:38,631 | INFO     | chi2: 11.74316417259159
[2025-12-03 05:16:15] 2025-12-03 04:15:38,631 | INFO     | current memory leak: 3.11 B/s (using 1372 data points, chi2=11.74)
[2025-12-03 05:16:15] 2025-12-03 04:15:38,632 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-03 05:16:15] 2025-12-03 04:15:38,633 | INFO     | ..............................
[2025-12-03 05:16:15] 2025-12-03 04:15:38,633 | INFO     | . Timing measurements:
[2025-12-03 05:16:15] 2025-12-03 04:15:38,633 | INFO     | . get job = 0 s
[2025-12-03 05:16:15] 2025-12-03 04:15:38,633 | INFO     | . initial setup = 3 s
[2025-12-03 05:16:15] 2025-12-03 04:15:38,633 | INFO     | . payload setup = 163 s
[2025-12-03 05:16:15] 2025-12-03 04:15:38,633 | INFO     | . stage-in = 0 s
[2025-12-03 05:16:15] 2025-12-03 04:15:38,633 | INFO     | . payload execution = 84800 s
[2025-12-03 05:16:15] 2025-12-03 04:15:38,634 | INFO     | . stage-out = 3 s
[2025-12-03 05:16:15] 2025-12-03 04:15:38,634 | INFO     | . log creation = 1 s
[2025-12-03 05:16:15] 2025-12-03 04:15:38,634 | INFO     | ..............................
[2025-12-03 05:16:15] 2025-12-03 04:15:38,770 | INFO     | 
[2025-12-03 05:16:15] 2025-12-03 04:15:38,770 | INFO     | job summary report
[2025-12-03 05:16:15] 2025-12-03 04:15:38,770 | INFO     | --------------------------------------------------
[2025-12-03 05:16:15] 2025-12-03 04:15:38,770 | INFO     | PanDA job id: 6896556868
[2025-12-03 05:16:15] 2025-12-03 04:15:38,771 | INFO     | task id: 47556161
[2025-12-03 05:16:15] 2025-12-03 04:15:38,771 | INFO     | errors: (none)
[2025-12-03 05:16:15] 2025-12-03 04:15:38,771 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 05:16:15] 2025-12-03 04:15:38,771 | INFO     | pilot state: finished 
[2025-12-03 05:16:15] 2025-12-03 04:15:38,771 | INFO     | transexitcode: 0
[2025-12-03 05:16:15] 2025-12-03 04:15:38,771 | INFO     | exeerrorcode: 0
[2025-12-03 05:16:15] 2025-12-03 04:15:38,771 | INFO     | exeerrordiag: 
[2025-12-03 05:16:15] 2025-12-03 04:15:38,772 | INFO     | exitcode: 0
[2025-12-03 05:16:15] 2025-12-03 04:15:38,772 | INFO     | exitmsg: OK
[2025-12-03 05:16:15] 2025-12-03 04:15:38,772 | INFO     | cpuconsumptiontime: 314713 s
[2025-12-03 05:16:15] 2025-12-03 04:15:38,772 | INFO     | nevents: 1000
[2025-12-03 05:16:15] 2025-12-03 04:15:38,772 | INFO     | neventsw: 0
[2025-12-03 05:16:15] 2025-12-03 04:15:38,772 | INFO     | pid: 14664
[2025-12-03 05:16:15] 2025-12-03 04:15:38,772 | INFO     | pgrp: 14664
[2025-12-03 05:16:15] 2025-12-03 04:15:38,772 | INFO     | corecount: 8
[2025-12-03 05:16:15] 2025-12-03 04:15:38,772 | INFO     | event service: False
[2025-12-03 05:16:15] 2025-12-03 04:15:38,772 | INFO     | sizes: {0: 2284034, 1: 2284233, 12: 2284233, 22: 2284261, 33: 2284289, 44: 2284345, 55: 2284501, 65: 2284529, 76: 2284557, 87: 2284613, 98: 2284641, 103: 2285211, 
[2025-12-03 05:16:15] 2025-12-03 04:15:38,773 | INFO     | --------------------------------------------------
[2025-12-03 05:16:15] 2025-12-03 04:15:38,773 | INFO     | 
[2025-12-03 05:16:15] 2025-12-03 04:15:38,773 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-03 05:16:15] 2025-12-03 04:15:38,983 | INFO     | time since job start (85275s) is within the limit (172800.0s)
[2025-12-03 05:16:15] 2025-12-03 04:15:39,260 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,261 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,261 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,261 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,261 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,261 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,261 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,261 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,261 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,261 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,261 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,262 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,262 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,262 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,262 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,262 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,262 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,262 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 05:16:15] 2025-12-03 04:15:39,262 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,262 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 05:16:15] 2025-12-03 04:15:39,262 | INFO     | job 6896556868 has completed (purged errors)
[2025-12-03 05:16:15] 2025-12-03 04:15:39,263 | INFO     | overall cleanup function is called
[2025-12-03 05:16:15] 2025-12-03 04:15:40,279 | INFO     | --- collectZombieJob: --- 10, [14664]
[2025-12-03 05:16:15] 2025-12-03 04:15:40,279 | INFO     | zombie collector waiting for pid 14664
[2025-12-03 05:16:15] 2025-12-03 04:15:40,280 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 05:16:15] 2025-12-03 04:15:40,280 | INFO     | collected zombie processes
[2025-12-03 05:16:15] 2025-12-03 04:15:40,280 | INFO     | will attempt to kill all subprocesses of pid=14664
[2025-12-03 05:16:15] 2025-12-03 04:15:40,409 | INFO     | process IDs to be killed: [14664] (in reverse order)
[2025-12-03 05:16:15] 2025-12-03 04:15:41,149 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 05:16:15] 2025-12-03 04:15:41,149 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 05:16:15] 2025-12-03 04:15:41,152 | INFO     | did not find any defunct processes belonging to 14664
[2025-12-03 05:16:15] 2025-12-03 04:15:41,155 | INFO     | did not find any defunct processes belonging to 14664
[2025-12-03 05:16:15] 2025-12-03 04:15:41,214 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 05:16:15] 2025-12-03 04:15:41,215 | INFO     | ready for new job
[2025-12-03 05:16:15] 2025-12-03 04:15:41,215 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 05:16:15] 2025-12-03 04:15:41,220 | INFO     | ***************************************
[2025-12-03 05:16:15] 2025-12-03 04:15:41,220 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 05:16:15] 2025-12-03 04:15:41,220 | INFO     | ***************************************
[2025-12-03 05:16:15] 2025-12-03 04:15:41,220 | INFO     | 
[2025-12-03 05:16:15] 2025-12-03 04:15:41,221 | INFO     | pilot is running in a VM
[2025-12-03 05:16:15] 2025-12-03 04:15:41,221 | INFO     | architecture information:
[2025-12-03 05:16:15] 2025-12-03 04:15:41,222 | INFO     | executing command: cat /etc/os-release
[2025-12-03 05:16:15] 2025-12-03 04:15:41,401 | INFO     | cat /etc/os-release:
[2025-12-03 05:16:15] NAME="CentOS Linux"
[2025-12-03 05:16:15] VERSION="7 (Core)"
[2025-12-03 05:16:15] ID="centos"
[2025-12-03 05:16:15] ID_LIKE="rhel fedora"
[2025-12-03 05:16:15] VERSION_ID="7"
[2025-12-03 05:16:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 05:16:15] ANSI_COLOR="0;31"
[2025-12-03 05:16:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 05:16:15] HOME_URL="https://www.centos.org/"
[2025-12-03 05:16:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 05:16:15] 
[2025-12-03 05:16:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 05:16:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 05:16:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 05:16:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 05:16:15] 
[2025-12-03 05:16:15] 2025-12-03 04:15:41,401 | INFO     | ***************************************
[2025-12-03 05:16:15] 2025-12-03 04:15:41,904 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-03 05:16:15] 2025-12-03 04:15:42,066 | INFO     | sufficient remaining disk space (491116298240 B)
[2025-12-03 05:16:15] 2025-12-03 04:15:42,066 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 05:16:15] 2025-12-03 04:15:42,066 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 05:16:15] 2025-12-03 04:15:42,066 | INFO     | update_server=False
[2025-12-03 05:16:15] 2025-12-03 04:15:42,066 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 05:16:15] 2025-12-03 04:15:42,067 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:16:15] 2025-12-03 04:15:42,067 | INFO     | aborting loop
[2025-12-03 05:16:15] 2025-12-03 04:15:42,073 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 05:16:15] 2025-12-03 04:15:42,135 | INFO     | all job control threads have been joined
[2025-12-03 05:16:15] 2025-12-03 04:15:42,433 | INFO     | all payload control threads have been joined
[2025-12-03 05:16:15] 2025-12-03 04:15:43,050 | INFO     | all data control threads have been joined
[2025-12-03 05:16:15] 2025-12-03 04:15:43,072 | INFO     | [job] retrieve thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:43,073 | INFO     | [job] job monitor thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:43,102 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:43,141 | INFO     | [job] control thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:43,221 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:43,236 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:43,278 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 05:16:15] 2025-12-03 04:15:43,439 | INFO     | [payload] control thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:43,707 | INFO     | [payload] validate_post thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:43,786 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:16:15] 2025-12-03 04:15:43,923 | INFO     | [data] copytool_in thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:43,940 | INFO     | [payload] failed_post thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:44,056 | INFO     | [data] control thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:44,079 | INFO     | [data] copytool_out thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:44,264 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:44,428 | INFO     | [job] validate thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:44,792 | INFO     | [job] queue monitor thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:47,287 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 05:16:15] 2025-12-03 04:15:51,432 | INFO     | [monitor] cgroup control has ended
[2025-12-03 05:16:15] 2025-12-03 04:15:51,656 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140359506335552)>', '<ExcThread(monitor, started 140358784640768)>']
[2025-12-03 05:16:15] 2025-12-03 04:15:56,681 | INFO     | all workflow threads have been joined
[2025-12-03 05:16:15] 2025-12-03 04:15:56,681 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 05:16:15] 2025-12-03 04:15:56,682 | INFO     | traces error code: 0
[2025-12-03 05:16:15] 2025-12-03 04:15:56,682 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 05:16:15] 2025-12-03 04:16:12,143 | INFO     | PID=8068 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 05:16:15] 2025-12-03 04:16:12,143 | INFO     | .. there are 9 such processes running
[2025-12-03 05:16:15] 2025-12-03 04:16:12,144 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 05:16:15] 2025-12-03 04:16:12,144 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 05:16:15] 2025-12-03 04:16:12,144 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 05:16:15] 2025-12-03 04:16:12,144 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 05:16:15] 2025-12-03 04:16:12,144 | INFO     | [monitor] control thread has ended
[2025-12-03 05:16:15] 2025-12-03 04:16:12,429 [wrapper] ==== pilot stdout END ====
[2025-12-03 05:16:15] 2025-12-03 04:16:12,545 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 05:16:15] 2025-12-03 04:16:12,637 [wrapper] pilotpid: 8068
[2025-12-03 05:16:15] 2025-12-03 04:16:12,728 [wrapper] Pilot exit status: 0
[2025-12-03 05:16:15] 2025-12-03 04:16:13,155 [wrapper] pandaids: 6896556868
[2025-12-03 05:16:15] 2025-12-03 04:16:13,814 [wrapper] cleanup supervisor_pilot 31915 8069
[2025-12-03 05:16:15] 2025-12-03 04:16:13,885 [wrapper] Test setup, not cleaning
[2025-12-03 05:16:15] 2025-12-03 04:16:13,978 [wrapper] apfmon messages muted
[2025-12-03 05:16:15] 2025-12-03 04:16:14,048 [wrapper] ==== wrapper stdout END ====
[2025-12-03 05:16:15] 2025-12-03 04:16:14,121 [wrapper] ==== wrapper stderr END ====
[2025-12-03 05:16:15]  *** Error codes and diagnostics ***
[2025-12-03 05:16:15]     "exeErrorCode": 0,
[2025-12-03 05:16:15]     "exeErrorDiag": "",
[2025-12-03 05:16:15]     "pilotErrorCode": 0,
[2025-12-03 05:16:15]     "pilotErrorDiag": "",
[2025-12-03 05:16:15]  *** Listing of results directory ***
[2025-12-03 05:16:15] total 1322040
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc    576529 Nov 25 05:09 pilot3.tar.gz
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc      5112 Nov 25 05:30 queuedata.json
[2025-12-03 05:16:15] -rwx------. 1 boinc boinc     36292 Nov 25 05:35 runpilot2-wrapper.sh
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc       100 Dec  2 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 05:16:15] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 05:29 run_atlas
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc       105 Dec  2 05:29 job.xml
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc      6391 Dec  2 05:29 init_data.xml
[2025-12-03 05:16:15] -rw-r--r--. 2 boinc boinc 408663785 Dec  2 05:29 EVNT.47483658._002083.pool.root.1
[2025-12-03 05:16:15] -rw-r--r--. 2 boinc boinc     15847 Dec  2 05:29 start_atlas.sh
[2025-12-03 05:16:15] drwxrwx--x. 2 boinc boinc        68 Dec  2 05:29 shared
[2025-12-03 05:16:15] -rw-r--r--. 2 boinc boinc    590107 Dec  2 05:29 input.tar.gz
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc         0 Dec  2 05:29 boinc_lockfile
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc      2780 Dec  2 05:30 pandaJob.out
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc    992001 Dec  2 05:34 agis_schedconf.cvmfs.json
[2025-12-03 05:16:15] drwx------. 5 boinc boinc      4096 Dec  2 05:34 pilot3
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc       533 Dec  3 04:47 boinc_task_state.xml
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc 913509220 Dec  3 05:12 HITS.47556161._000661.pool.root.1
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc      1033 Dec  3 05:13 memory_monitor_summary.json
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc   1516240 Dec  3 05:14 agis_ddmendpoints.agis.ALL.json
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc   2471036 Dec  3 05:14 log.47556161._000661.job.log.tgz.1
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc        95 Dec  3 05:15 pilot_heartbeat.json
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc      8620 Dec  3 05:15 heartbeat.json
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc      8192 Dec  3 05:16 boinc_mmap_file
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc        29 Dec  3 05:16 wrapper_checkpoint.txt
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc       819 Dec  3 05:16 pilotlog.txt
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc  11375297 Dec  3 05:16 log.47556161._000661.job.log.1
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc       353 Dec  3 05:16 output.list
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc       620 Dec  3 05:16 runtime_log
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc  13864960 Dec  3 05:16 result.tar.gz
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc       662 Dec  3 05:16 SWQKDmlwzh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLKJKDmndewCo.diag
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc      8817 Dec  3 05:16 runtime_log.err
[2025-12-03 05:16:15] -rw-r--r--. 1 boinc boinc     21512 Dec  3 05:16 stderr.txt
[2025-12-03 05:16:15] HITS file was successfully produced:
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc 913509220 Dec  3 05:12 shared/HITS.pool.root.1
[2025-12-03 05:16:15]  *** Contents of shared directory: ***
[2025-12-03 05:16:15] total 1305324
[2025-12-03 05:16:15] -rw-r--r--. 2 boinc boinc 408663785 Dec  2 05:29 ATLAS.root_0
[2025-12-03 05:16:15] -rw-r--r--. 2 boinc boinc     15847 Dec  2 05:29 start_atlas.sh
[2025-12-03 05:16:15] -rw-r--r--. 2 boinc boinc    590107 Dec  2 05:29 input.tar.gz
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc 913509220 Dec  3 05:12 HITS.pool.root.1
[2025-12-03 05:16:15] -rw-------. 1 boinc boinc  13864960 Dec  3 05:16 result.tar.gz
05:16:16 (4271): run_atlas exited; CPU time 315323.069521
05:16:16 (4271): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN