Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:56 (1712331): wrapper (7.7.26015): starting
00:00:56 (1712331): wrapper: running run_atlas (--nthreads 9)
[2025-11-30 00:00:56] Arguments: --nthreads 9
[2025-11-30 00:00:56] Threads: 9
[2025-11-30 00:00:56] Checking for CVMFS
[2025-11-30 00:00:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 00:00:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 00:00:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 00:00:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 00:00:58] 2.13.3.0 11888 35316 366744 153468 0 323 19745598 32935937 25758 16776704 0 185095182 99.526 225034439 35196 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-30 00:00:58] CVMFS is ok
[2025-11-30 00:00:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 00:00:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 00:00:58] Further information can be found at the LHC@home message board.
[2025-11-30 00:00:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 00:00:58] Checking for apptainer binary...
[2025-11-30 00:00:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 00:00:58] Running /usr/bin/apptainer --version
[2025-11-30 00:00:58] apptainer version 1.4.4-1.el9
[2025-11-30 00:00:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 00:00:58] c6-2-11-3.aglt2.org
[2025-11-30 00:00:58] apptainer works
[2025-11-30 00:00:58] Set ATHENA_PROC_NUMBER=9
[2025-11-30 00:00:58] Set ATHENA_CORE_NUMBER=9
[2025-11-30 00:00:59] Starting ATLAS job with PandaID=6896716180
[2025-11-30 00:00:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:40:05 (1712331): BOINC client no longer exists - exiting
04:40:05 (1712331): timer handler: client dead, exiting
04:46:36 (3854078): wrapper (7.7.26015): starting
04:46:36 (3854078): wrapper: running run_atlas (--nthreads 9)
[2025-12-01 04:46:36] Arguments: --nthreads 9
[2025-12-01 04:46:36] Threads: 9
[2025-12-01 04:46:36] This job has been restarted, cleaning up previous attempt
[2025-12-01 04:46:37] Checking for CVMFS
[2025-12-01 04:46:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 04:46:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 04:46:38] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 04:46:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 04:46:38] 2.13.3.0 11888 37042 382644 153512 0 324 22618920 32935936 25702 16776704 0 193513549 99.519 240140231 35395 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-01 04:46:38] CVMFS is ok
[2025-12-01 04:46:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 04:46:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 04:46:38] Further information can be found at the LHC@home message board.
[2025-12-01 04:46:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 04:46:38] Checking for apptainer binary...
[2025-12-01 04:46:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 04:46:38] Running /usr/bin/apptainer --version
[2025-12-01 04:46:38] apptainer version 1.4.4-1.el9
[2025-12-01 04:46:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 04:46:38] c6-2-11-3.aglt2.org
[2025-12-01 04:46:38] apptainer works
[2025-12-01 04:46:38] Set ATHENA_PROC_NUMBER=9
[2025-12-01 04:46:38] Set ATHENA_CORE_NUMBER=9
[2025-12-01 04:46:39] Starting ATLAS job with PandaID=6896716180
[2025-12-01 04:46:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 04:03:17]  *** The last 200 lines of the pilot log: ***
[2025-12-02 04:03:17] 2025-12-02 09:02:38,709 | INFO     | mean x: 1764624323.1115973
[2025-12-02 04:03:17] 2025-12-02 09:02:38,709 | INFO     | mean y: 3024887.955506929
[2025-12-02 04:03:17] 2025-12-02 09:02:38,709 | INFO     | intersect: -8709505212.226887
[2025-12-02 04:03:17] 2025-12-02 09:02:38,725 | INFO     | chi2: 13.628981029368697
[2025-12-02 04:03:17] 2025-12-02 09:02:38,727 | INFO     | sum of square deviations: 790456877272.3054
[2025-12-02 04:03:17] 2025-12-02 09:02:38,898 | INFO     | sum of deviations: 4452807923061.127
[2025-12-02 04:03:17] 2025-12-02 09:02:38,898 | INFO     | mean x: 1764624170.6303074
[2025-12-02 04:03:17] 2025-12-02 09:02:38,898 | INFO     | mean y: 3033764.311127379
[2025-12-02 04:03:17] 2025-12-02 09:02:38,898 | INFO     | intersect: -9937461048.41343
[2025-12-02 04:03:17] 2025-12-02 09:02:38,900 | INFO     | chi2: 10.146279099972997
[2025-12-02 04:03:17] 2025-12-02 09:02:38,910 | INFO     | current chi2=10.146279099972997 (change=25.553648668898482 %)
[2025-12-02 04:03:17] 2025-12-02 09:02:38,912 | INFO     | sum of square deviations: 781811634490.0183
[2025-12-02 04:03:17] 2025-12-02 09:02:38,931 | INFO     | monitor loop #3948: job 0:6896716180 is in state 'finished'
[2025-12-02 04:03:17] 2025-12-02 09:02:38,931 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:03:17] 2025-12-02 09:02:39,057 | INFO     | time since job start (83720s) is within the limit (172800.0s)
[2025-12-02 04:03:17] 2025-12-02 09:02:39,060 | INFO     | sum of deviations: 4949145407935.762
[2025-12-02 04:03:17] 2025-12-02 09:02:39,061 | INFO     | mean x: 1764624018.1484203
[2025-12-02 04:03:17] 2025-12-02 09:02:39,061 | INFO     | mean y: 3042516.0705363704
[2025-12-02 04:03:17] 2025-12-02 09:02:39,061 | INFO     | intersect: -11167654453.474127
[2025-12-02 04:03:17] 2025-12-02 09:02:39,088 | INFO     | chi2: 6.752459516910954
[2025-12-02 04:03:17] 2025-12-02 09:02:39,088 | INFO     | current chi2=6.752459516910954 (change=33.44890821179042 %)
[2025-12-02 04:03:17] 2025-12-02 09:02:39,100 | INFO     | sum of square deviations: 773229031477.9534
[2025-12-02 04:03:17] 2025-12-02 09:02:39,305 | INFO     | sum of deviations: 5191072353098.582
[2025-12-02 04:03:17] 2025-12-02 09:02:39,316 | INFO     | mean x: 1764623865.660767
[2025-12-02 04:03:17] 2025-12-02 09:02:39,317 | INFO     | mean y: 3046813.8230088498
[2025-12-02 04:03:17] 2025-12-02 09:02:39,317 | INFO     | intersect: -11843753797.298038
[2025-12-02 04:03:17] 2025-12-02 09:02:39,318 | INFO     | chi2: 5.820575399583714
[2025-12-02 04:03:17] 2025-12-02 09:02:39,319 | INFO     | current chi2=5.820575399583714 (change=13.800662040156125 %)
[2025-12-02 04:03:17] 2025-12-02 09:02:39,319 | INFO     | right removable region: 1355
[2025-12-02 04:03:17] 2025-12-02 09:02:39,339 | INFO     | sum of square deviations: 790452602392.3038
[2025-12-02 04:03:17] 2025-12-02 09:02:39,508 | INFO     | sum of deviations: 3389991536583.464
[2025-12-02 04:03:17] 2025-12-02 09:02:39,508 | INFO     | mean x: 1764624475.6303074
[2025-12-02 04:03:17] 2025-12-02 09:02:39,509 | INFO     | mean y: 3034614.781112738
[2025-12-02 04:03:17] 2025-12-02 09:02:39,509 | INFO     | intersect: -7564860056.613569
[2025-12-02 04:03:17] 2025-12-02 09:02:39,511 | INFO     | chi2: 9.827348202295951
[2025-12-02 04:03:17] 2025-12-02 09:02:39,511 | INFO     | current chi2=9.827348202295951 (change=27.8937421578379 %)
[2025-12-02 04:03:17] 2025-12-02 09:02:39,531 | INFO     | sum of square deviations: 781803250894.0177
[2025-12-02 04:03:17] 2025-12-02 09:02:39,778 | INFO     | sum of deviations: 3051823803256.71
[2025-12-02 04:03:17] 2025-12-02 09:02:39,779 | INFO     | mean x: 1764624628.1484203
[2025-12-02 04:03:17] 2025-12-02 09:02:39,779 | INFO     | mean y: 3040574.1697281413
[2025-12-02 04:03:17] 2025-12-02 09:02:39,779 | INFO     | intersect: -6885295382.272095
[2025-12-02 04:03:17] 2025-12-02 09:02:39,797 | INFO     | chi2: 8.42510441875705
[2025-12-02 04:03:17] 2025-12-02 09:02:39,797 | INFO     | current chi2=8.42510441875705 (change=14.268791078465066 %)
[2025-12-02 04:03:17] 2025-12-02 09:02:39,797 | INFO     | left removable region: 20
[2025-12-02 04:03:17] 2025-12-02 09:02:39,799 | INFO     | sum of square deviations: 737854751947.4801
[2025-12-02 04:03:17] 2025-12-02 09:02:39,973 | INFO     | sum of deviations: 4094390959796.7188
[2025-12-02 04:03:17] 2025-12-02 09:02:39,973 | INFO     | mean x: 1764624445.223221
[2025-12-02 04:03:17] 2025-12-02 09:02:39,974 | INFO     | mean y: 3067605.299625468
[2025-12-02 04:03:17] 2025-12-02 09:02:39,974 | INFO     | intersect: -9788917005.341644
[2025-12-02 04:03:17] 2025-12-02 09:02:39,976 | INFO     | chi2: 0.30169372024670565
[2025-12-02 04:03:17] 2025-12-02 09:02:39,976 | INFO     | current memory leak: 5.55 B/s (using 1335 data points, chi2=0.30)
[2025-12-02 04:03:17] 2025-12-02 09:02:39,998 | INFO     | could have reported an average CPU frequency of 2677 MHz (49 samples)
[2025-12-02 04:03:17] 2025-12-02 09:02:39,999 | INFO     | ..............................
[2025-12-02 04:03:17] 2025-12-02 09:02:39,999 | INFO     | . Timing measurements:
[2025-12-02 04:03:17] 2025-12-02 09:02:39,999 | INFO     | . get job = 0 s
[2025-12-02 04:03:17] 2025-12-02 09:02:39,999 | INFO     | . initial setup = 4 s
[2025-12-02 04:03:17] 2025-12-02 09:02:39,999 | INFO     | . payload setup = 24 s
[2025-12-02 04:03:17] 2025-12-02 09:02:39,999 | INFO     | . stage-in = 0 s
[2025-12-02 04:03:17] 2025-12-02 09:02:39,999 | INFO     | . payload execution = 83620 s
[2025-12-02 04:03:17] 2025-12-02 09:02:39,999 | INFO     | . stage-out = 8 s
[2025-12-02 04:03:17] 2025-12-02 09:02:39,999 | INFO     | . log creation = 1 s
[2025-12-02 04:03:17] 2025-12-02 09:02:39,999 | INFO     | ..............................
[2025-12-02 04:03:17] 2025-12-02 09:02:40,675 | INFO     | 
[2025-12-02 04:03:17] 2025-12-02 09:02:40,676 | INFO     | job summary report
[2025-12-02 04:03:17] 2025-12-02 09:02:40,676 | INFO     | --------------------------------------------------
[2025-12-02 04:03:17] 2025-12-02 09:02:40,676 | INFO     | PanDA job id: 6896716180
[2025-12-02 04:03:17] 2025-12-02 09:02:40,676 | INFO     | task id: 47556161
[2025-12-02 04:03:17] 2025-12-02 09:02:40,676 | INFO     | errors: (none)
[2025-12-02 04:03:17] 2025-12-02 09:02:40,676 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 04:03:17] 2025-12-02 09:02:40,676 | INFO     | pilot state: finished 
[2025-12-02 04:03:17] 2025-12-02 09:02:40,676 | INFO     | transexitcode: 0
[2025-12-02 04:03:17] 2025-12-02 09:02:40,676 | INFO     | exeerrorcode: 0
[2025-12-02 04:03:17] 2025-12-02 09:02:40,677 | INFO     | exeerrordiag: 
[2025-12-02 04:03:17] 2025-12-02 09:02:40,677 | INFO     | exitcode: 0
[2025-12-02 04:03:17] 2025-12-02 09:02:40,677 | INFO     | exitmsg: OK
[2025-12-02 04:03:17] 2025-12-02 09:02:40,677 | INFO     | cpuconsumptiontime: 253216 s
[2025-12-02 04:03:17] 2025-12-02 09:02:40,677 | INFO     | nevents: 1000
[2025-12-02 04:03:17] 2025-12-02 09:02:40,677 | INFO     | neventsw: 0
[2025-12-02 04:03:17] 2025-12-02 09:02:40,677 | INFO     | pid: 3896516
[2025-12-02 04:03:17] 2025-12-02 09:02:40,677 | INFO     | pgrp: 3896516
[2025-12-02 04:03:17] 2025-12-02 09:02:40,680 | INFO     | corecount: 9
[2025-12-02 04:03:17] 2025-12-02 09:02:40,680 | INFO     | event service: False
[2025-12-02 04:03:17] 2025-12-02 09:02:40,681 | INFO     | sizes: {0: 2284036, 1: 2284120, 2: 2284291, 3: 2284347, 14: 2284347, 18: 2284637, 25: 2284793, 83650: 2342310, 83651: 2342309, 83661: 2351387, 83664: 2351443, 8368
[2025-12-02 04:03:17] 2025-12-02 09:02:40,681 | INFO     | --------------------------------------------------
[2025-12-02 04:03:17] 2025-12-02 09:02:40,681 | INFO     | 
[2025-12-02 04:03:17] 2025-12-02 09:02:40,681 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-12-02 04:03:17] 2025-12-02 09:02:40,754 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,754 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,754 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,755 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,755 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,755 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,755 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,755 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,755 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,755 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,755 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,755 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,755 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,755 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,756 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,756 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,756 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,756 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 04:03:17] 2025-12-02 09:02:40,756 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,756 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 04:03:17] 2025-12-02 09:02:40,756 | INFO     | job 6896716180 has completed (purged errors)
[2025-12-02 04:03:17] 2025-12-02 09:02:40,756 | INFO     | overall cleanup function is called
[2025-12-02 04:03:17] 2025-12-02 09:02:41,779 | INFO     | --- collectZombieJob: --- 10, [3896516]
[2025-12-02 04:03:17] 2025-12-02 09:02:41,779 | INFO     | zombie collector waiting for pid 3896516
[2025-12-02 04:03:17] 2025-12-02 09:02:41,780 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 04:03:17] 2025-12-02 09:02:41,780 | INFO     | collected zombie processes
[2025-12-02 04:03:17] 2025-12-02 09:02:41,780 | INFO     | will attempt to kill all subprocesses of pid=3896516
[2025-12-02 04:03:17] 2025-12-02 09:02:44,616 | INFO     | process IDs to be killed: [3896516] (in reverse order)
[2025-12-02 04:03:17] 2025-12-02 09:02:45,173 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 04:03:17] 2025-12-02 09:02:45,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 04:03:17] 2025-12-02 09:02:45,250 | INFO     | did not find any defunct processes belonging to 3896516
[2025-12-02 04:03:17] 2025-12-02 09:02:45,309 | INFO     | did not find any defunct processes belonging to 3896516
[2025-12-02 04:03:17] 2025-12-02 09:02:45,318 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 04:03:17] 2025-12-02 09:02:45,318 | INFO     | ready for new job
[2025-12-02 04:03:17] 2025-12-02 09:02:45,318 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 04:03:17] 2025-12-02 09:02:45,347 | INFO     | ***************************************
[2025-12-02 04:03:17] 2025-12-02 09:02:45,348 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 04:03:17] 2025-12-02 09:02:45,348 | INFO     | ***************************************
[2025-12-02 04:03:17] 2025-12-02 09:02:45,348 | INFO     | 
[2025-12-02 04:03:17] 2025-12-02 09:02:45,382 | INFO     | architecture information:
[2025-12-02 04:03:17] 2025-12-02 09:02:45,464 | INFO     | executing command: cat /etc/os-release
[2025-12-02 04:03:17] 2025-12-02 09:02:45,577 | INFO     | cat /etc/os-release:
[2025-12-02 04:03:17] NAME="CentOS Linux"
[2025-12-02 04:03:17] VERSION="7 (Core)"
[2025-12-02 04:03:17] ID="centos"
[2025-12-02 04:03:17] ID_LIKE="rhel fedora"
[2025-12-02 04:03:17] VERSION_ID="7"
[2025-12-02 04:03:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 04:03:17] ANSI_COLOR="0;31"
[2025-12-02 04:03:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 04:03:17] HOME_URL="https://www.centos.org/"
[2025-12-02 04:03:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 04:03:17] 
[2025-12-02 04:03:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 04:03:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 04:03:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 04:03:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 04:03:17] 
[2025-12-02 04:03:17] 2025-12-02 09:02:45,578 | INFO     | ***************************************
[2025-12-02 04:03:17] 2025-12-02 09:02:46,081 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-12-02 04:03:17] 2025-12-02 09:02:46,169 | INFO     | sufficient remaining disk space (68747788288 B)
[2025-12-02 04:03:17] 2025-12-02 09:02:46,170 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 04:03:17] 2025-12-02 09:02:46,170 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 04:03:17] 2025-12-02 09:02:46,170 | INFO     | update_server=False
[2025-12-02 04:03:17] 2025-12-02 09:02:46,170 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 04:03:17] 2025-12-02 09:02:46,170 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 04:03:17] 2025-12-02 09:02:46,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:03:17] 2025-12-02 09:02:46,442 | INFO     | all data control threads have been joined
[2025-12-02 04:03:17] 2025-12-02 09:02:46,533 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 04:03:17] 2025-12-02 09:02:46,534 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 04:03:17] 2025-12-02 09:02:46,534 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:03:17] 2025-12-02 09:02:46,534 | INFO     | will abort loop
[2025-12-02 04:03:17] 2025-12-02 09:02:47,174 | INFO     | all job control threads have been joined
[2025-12-02 04:03:17] 2025-12-02 09:02:47,176 | INFO     | [job] retrieve thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:47,180 | INFO     | [job] queue monitor thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:47,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:47,461 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:47,464 | INFO     | [data] control thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:47,493 | INFO     | [payload] failed_post thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:47,553 | INFO     | [job] job monitor thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:47,760 | INFO     | all payload control threads have been joined
[2025-12-02 04:03:17] 2025-12-02 09:02:47,820 | INFO     | [payload] validate_post thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:47,885 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:48,039 | INFO     | [data] copytool_in thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:48,040 | INFO     | [job] validate thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:48,177 | INFO     | [data] copytool_out thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:48,180 | INFO     | [job] control thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:48,234 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:48,789 | INFO     | [payload] control thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:49,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 04:03:17] 2025-12-02 09:02:53,282 | INFO     | [monitor] cgroup control has ended
[2025-12-02 04:03:17] 2025-12-02 09:02:53,426 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 04:03:17] 2025-12-02 09:02:54,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140624817497920)>', '<ExcThread(monitor, started 140624309237504)>']
[2025-12-02 04:03:17] 2025-12-02 09:02:59,078 | INFO     | all workflow threads have been joined
[2025-12-02 04:03:17] 2025-12-02 09:02:59,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 04:03:17] 2025-12-02 09:02:59,079 | INFO     | traces error code: 0
[2025-12-02 04:03:17] 2025-12-02 09:02:59,079 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 04:03:17] 2025-12-02 09:03:15,045 | INFO     | PID=3869617 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 04:03:17] 2025-12-02 09:03:15,045 | INFO     | .. there are 66 such processes running
[2025-12-02 04:03:17] 2025-12-02 09:03:15,045 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 04:03:17] 2025-12-02 09:03:15,045 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 04:03:17] 2025-12-02 09:03:15,045 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 04:03:17] 2025-12-02 09:03:15,046 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 04:03:17] 2025-12-02 09:03:15,046 | INFO     | [monitor] control thread has ended
[2025-12-02 04:03:17] 2025-12-02 09:03:16,876 [wrapper] ==== pilot stdout END ====
[2025-12-02 04:03:17] 2025-12-02 09:03:16,883 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 04:03:17] 2025-12-02 09:03:16,906 [wrapper] pilotpid: 3869617
[2025-12-02 04:03:17] 2025-12-02 09:03:16,961 [wrapper] Pilot exit status: 0
[2025-12-02 04:03:17] 2025-12-02 09:03:17,097 [wrapper] pandaids: 6896716180 6896716180
[2025-12-02 04:03:17] 2025-12-02 09:03:17,530 [wrapper] cleanup supervisor_pilot 1151793 3869618
[2025-12-02 04:03:17] 2025-12-02 09:03:17,541 [wrapper] Test setup, not cleaning
[2025-12-02 04:03:17] 2025-12-02 09:03:17,555 [wrapper] apfmon messages muted
[2025-12-02 04:03:17] 2025-12-02 09:03:17,569 [wrapper] ==== wrapper stdout END ====
[2025-12-02 04:03:17] 2025-12-02 09:03:17,590 [wrapper] ==== wrapper stderr END ====
[2025-12-02 04:03:17]  *** Error codes and diagnostics ***
[2025-12-02 04:03:17]     "exeErrorCode": 0,
[2025-12-02 04:03:17]     "exeErrorDiag": "",
[2025-12-02 04:03:17]     "pilotErrorCode": 0,
[2025-12-02 04:03:17]     "pilotErrorDiag": "",
[2025-12-02 04:03:17]  *** Listing of results directory ***
[2025-12-02 04:03:17] total 1731856
[2025-12-02 04:03:17] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-12-02 04:03:17] -rwx------. 1 boincer umatlas     36292 Nov 25 02:54 runpilot2-wrapper.sh
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:54 queuedata.json
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas       100 Nov 30 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 04:03:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 30 00:00 run_atlas
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas       105 Nov 30 00:00 job.xml
[2025-12-02 04:03:17] -rw-r--r--. 3 boincer umatlas 409996300 Nov 30 00:00 EVNT.47483658._002136.pool.root.1
[2025-12-02 04:03:17] -rw-r--r--. 3 boincer umatlas 409996300 Nov 30 00:00 ATLAS.root_0
[2025-12-02 04:03:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 00:00 start_atlas.sh
[2025-12-02 04:03:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 30 00:00 shared
[2025-12-02 04:03:17] -rw-r--r--. 2 boincer umatlas    590099 Nov 30 00:00 input.tar.gz
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas         0 Nov 30 00:00 boinc_lockfile
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas      2784 Dec  1 04:46 pandaJob.out
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas        57 Dec  1 04:46 setup.sh.local
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas    992532 Dec  1 04:47 agis_schedconf.cvmfs.json
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas       533 Dec  2 03:43 boinc_task_state.xml
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas      6879 Dec  2 03:54 init_data.xml
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas 926402176 Dec  2 03:59 HITS.47556161._001194.pool.root.1
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas      1070 Dec  2 04:02 memory_monitor_summary.json
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas   1516240 Dec  2 04:02 agis_ddmendpoints.agis.ALL.json
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas   2421506 Dec  2 04:02 log.47556161._001194.job.log.tgz.1
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas        96 Dec  2 04:02 pilot_heartbeat.json
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas      7293 Dec  2 04:02 heartbeat.json
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 04:02 boinc_mmap_file
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas        29 Dec  2 04:02 wrapper_checkpoint.txt
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas       823 Dec  2 04:03 pilotlog.txt
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas   9130948 Dec  2 04:03 log.47556161._001194.job.log.1
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas       353 Dec  2 04:03 output.list
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas       620 Dec  2 04:03 runtime_log
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas  11571200 Dec  2 04:03 result.tar.gz
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas      9433 Dec  2 04:03 runtime_log.err
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas       790 Dec  2 04:03 hkaNDmH32h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUFMKDmpglIQn.diag
[2025-12-02 04:03:17] -rw-r--r--. 1 boincer umatlas     23571 Dec  2 04:03 stderr.txt
[2025-12-02 04:03:17] HITS file was successfully produced:
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas 926402176 Dec  2 03:59 shared/HITS.pool.root.1
[2025-12-02 04:03:17]  *** Contents of shared directory: ***
[2025-12-02 04:03:17] total 1316984
[2025-12-02 04:03:17] -rw-r--r--. 3 boincer umatlas 409996300 Nov 30 00:00 ATLAS.root_0
[2025-12-02 04:03:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 00:00 start_atlas.sh
[2025-12-02 04:03:17] -rw-r--r--. 2 boincer umatlas    590099 Nov 30 00:00 input.tar.gz
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas 926402176 Dec  2 03:59 HITS.pool.root.1
[2025-12-02 04:03:17] -rw-------. 1 boincer umatlas  11571200 Dec  2 04:03 result.tar.gz
04:03:19 (3854078): run_atlas exited; CPU time 256496.249476
04:03:19 (3854078): called boinc_finish(0)

</stderr_txt>
]]>

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