Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:23:43 (1814963): wrapper (7.7.26015): starting
00:23:43 (1814963): wrapper: running run_atlas (--nthreads 9)
[2025-11-30 00:23:44] Arguments: --nthreads 9
[2025-11-30 00:23:44] Threads: 9
[2025-11-30 00:23:44] Checking for CVMFS
[2025-11-30 00:23:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 00:23:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 00:23:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 00:23:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 00:23:46] 2.13.3.0 11888 35339 359860 153470 1 221 19825461 32935937 25532 16776704 0 185281809 99.526 225037165 35196 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-30 00:23:46] CVMFS is ok
[2025-11-30 00:23:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 00:23:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 00:23:46] Further information can be found at the LHC@home message board.
[2025-11-30 00:23:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 00:23:46] Checking for apptainer binary...
[2025-11-30 00:23:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 00:23:46] Running /usr/bin/apptainer --version
[2025-11-30 00:23:46] apptainer version 1.4.4-1.el9
[2025-11-30 00:23:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 00:23:47] c6-2-11-3.aglt2.org
[2025-11-30 00:23:47] apptainer works
[2025-11-30 00:23:47] Set ATHENA_PROC_NUMBER=9
[2025-11-30 00:23:47] Set ATHENA_CORE_NUMBER=9
[2025-11-30 00:23:47] Starting ATLAS job with PandaID=6899596423
[2025-11-30 00:23:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:40:10 (1814963): BOINC client no longer exists - exiting
04:40:10 (1814963): timer handler: client dead, exiting
05:10:58 (4027146): wrapper (7.7.26015): starting
05:10:58 (4027146): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 05:10:58] Arguments: --nthreads 8
[2025-12-01 05:10:58] Threads: 8
[2025-12-01 05:10:58] This job has been restarted, cleaning up previous attempt
[2025-12-01 05:10:58] Checking for CVMFS
[2025-12-01 05:10:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 05:10:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 05:10:59] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 05:11:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 05:11:01] 2.13.3.0 11888 37066 396352 153512 0 536 23090422 32935936 29635 16776704 0 193829868 99.519 240302785 35384 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-01 05:11:01] CVMFS is ok
[2025-12-01 05:11:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 05:11:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 05:11:01] Further information can be found at the LHC@home message board.
[2025-12-01 05:11:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 05:11:01] Checking for apptainer binary...
[2025-12-01 05:11:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 05:11:01] Running /usr/bin/apptainer --version
[2025-12-01 05:11:01] apptainer version 1.4.4-1.el9
[2025-12-01 05:11:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 05:11:02] c6-2-11-3.aglt2.org
[2025-12-01 05:11:02] apptainer works
[2025-12-01 05:11:02] Set ATHENA_PROC_NUMBER=8
[2025-12-01 05:11:02] Set ATHENA_CORE_NUMBER=8
[2025-12-01 05:11:02] Starting ATLAS job with PandaID=6899596423
[2025-12-01 05:11:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 18:35:06]  *** The last 200 lines of the pilot log: ***
[2025-12-02 18:35:06] 2025-12-02 23:34:17,293 | INFO     | time since job start (134510s) is within the limit (172800.0s)
[2025-12-02 18:35:06] 2025-12-02 23:34:18,938 | INFO     | monitor loop #6230: job 0:6899596423 is in state 'finished'
[2025-12-02 18:35:06] 2025-12-02 23:34:18,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 18:35:06] 2025-12-02 23:34:19,302 | INFO     | time since job start (134512s) is within the limit (172800.0s)
[2025-12-02 18:35:06] 2025-12-02 23:34:21,309 | INFO     | time since job start (134514s) is within the limit (172800.0s)
[2025-12-02 18:35:06] 2025-12-02 23:34:21,445 | INFO     | monitor loop #6231: job 0:6899596423 is in state 'finished'
[2025-12-02 18:35:06] 2025-12-02 23:34:21,452 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 18:35:06] 2025-12-02 23:34:23,316 | INFO     | time since job start (134516s) is within the limit (172800.0s)
[2025-12-02 18:35:06] 2025-12-02 23:34:23,957 | INFO     | monitor loop #6232: job 0:6899596423 is in state 'finished'
[2025-12-02 18:35:06] 2025-12-02 23:34:23,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 18:35:06] 2025-12-02 23:34:25,324 | INFO     | time since job start (134518s) is within the limit (172800.0s)
[2025-12-02 18:35:06] 2025-12-02 23:34:26,462 | INFO     | monitor loop #6233: job 0:6899596423 is in state 'finished'
[2025-12-02 18:35:06] 2025-12-02 23:34:26,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 18:35:06] 2025-12-02 23:34:27,333 | INFO     | time since job start (134520s) is within the limit (172800.0s)
[2025-12-02 18:35:06] 2025-12-02 23:34:27,903 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 18:35:06] 2025-12-02 23:34:27,982 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2740.1828229166663
[2025-12-02 18:35:06] 2025-12-02 23:34:28,072 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6899596423/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 18:35:06] 2025-12-02 23:34:28,072 | INFO     | extracted standard info from prmon json
[2025-12-02 18:35:06] 2025-12-02 23:34:28,073 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 18:35:06] 2025-12-02 23:34:28,073 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 18:35:06] 2025-12-02 23:34:28,229 | INFO     | fitting pss+swap vs Time
[2025-12-02 18:35:06] 2025-12-02 23:34:28,256 | INFO     | sum of square deviations: 3310858672841.2305
[2025-12-02 18:35:06] 2025-12-02 23:34:28,904 | INFO     | sum of deviations: 11786357486800.963
[2025-12-02 18:35:06] 2025-12-02 23:34:28,904 | INFO     | mean x: 1764651276.4064486
[2025-12-02 18:35:06] 2025-12-02 23:34:28,904 | INFO     | mean y: 2928562.0726612173
[2025-12-02 18:35:06] 2025-12-02 23:34:28,905 | INFO     | intersect: -6279070411.147604
[2025-12-02 18:35:06] 2025-12-02 23:34:28,907 | INFO     | chi2: 29.817751911748214
[2025-12-02 18:35:06] 2025-12-02 23:34:28,918 | INFO     | sum of square deviations: 3288359469822.2446
[2025-12-02 18:35:06] 2025-12-02 23:34:29,010 | INFO     | monitor loop #6234: job 0:6899596423 is in state 'finished'
[2025-12-02 18:35:06] 2025-12-02 23:34:29,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 18:35:06] 2025-12-02 23:34:29,476 | INFO     | time since job start (134522s) is within the limit (172800.0s)
[2025-12-02 18:35:06] 2025-12-02 23:34:29,543 | INFO     | sum of deviations: 12566681120228.654
[2025-12-02 18:35:06] 2025-12-02 23:34:29,544 | INFO     | mean x: 1764651123.915339
[2025-12-02 18:35:06] 2025-12-02 23:34:29,544 | INFO     | mean y: 2933849.933545744
[2025-12-02 18:35:06] 2025-12-02 23:34:29,544 | INFO     | intersect: -6740796014.823576
[2025-12-02 18:35:06] 2025-12-02 23:34:29,567 | INFO     | chi2: 26.347014381712462
[2025-12-02 18:35:06] 2025-12-02 23:34:29,567 | INFO     | current chi2=26.347014381712462 (change=11.63983636428432 %)
[2025-12-02 18:35:06] 2025-12-02 23:34:29,567 | INFO     | right removable region: 2196
[2025-12-02 18:35:06] 2025-12-02 23:34:29,595 | INFO     | sum of square deviations: 3288354222602.2534
[2025-12-02 18:35:06] 2025-12-02 23:34:30,130 | INFO     | sum of deviations: 10832243201846.398
[2025-12-02 18:35:06] 2025-12-02 23:34:30,131 | INFO     | mean x: 1764651428.915339
[2025-12-02 18:35:06] 2025-12-02 23:34:30,131 | INFO     | mean y: 2935027.7332726447
[2025-12-02 18:35:06] 2025-12-02 23:34:30,131 | INFO     | intersect: -5810043791.005383
[2025-12-02 18:35:06] 2025-12-02 23:34:30,133 | INFO     | chi2: 25.087145293476034
[2025-12-02 18:35:06] 2025-12-02 23:34:30,134 | INFO     | current chi2=25.087145293476034 (change=15.865068004701985 %)
[2025-12-02 18:35:06] 2025-12-02 23:34:30,134 | INFO     | left removable region: 10
[2025-12-02 18:35:06] 2025-12-02 23:34:30,144 | INFO     | sum of square deviations: 3239210236699.144
[2025-12-02 18:35:06] 2025-12-02 23:34:30,422 | INFO     | sum of deviations: 10932489424653.916
[2025-12-02 18:35:06] 2025-12-02 23:34:30,423 | INFO     | mean x: 1764651398.4345837
[2025-12-02 18:35:06] 2025-12-02 23:34:30,423 | INFO     | mean y: 2946865.0064043915
[2025-12-02 18:35:06] 2025-12-02 23:34:30,423 | INFO     | intersect: -5952835977.67997
[2025-12-02 18:35:06] 2025-12-02 23:34:30,426 | INFO     | chi2: 17.68834335131164
[2025-12-02 18:35:06] 2025-12-02 23:34:30,436 | INFO     | current memory leak: 3.38 B/s (using 2186 data points, chi2=17.69)
[2025-12-02 18:35:06] 2025-12-02 23:34:30,439 | INFO     | could have reported an average CPU frequency of 2683 MHz (76 samples)
[2025-12-02 18:35:06] 2025-12-02 23:34:30,439 | INFO     | ..............................
[2025-12-02 18:35:06] 2025-12-02 23:34:30,439 | INFO     | . Timing measurements:
[2025-12-02 18:35:06] 2025-12-02 23:34:30,439 | INFO     | . get job = 0 s
[2025-12-02 18:35:06] 2025-12-02 23:34:30,439 | INFO     | . initial setup = 6 s
[2025-12-02 18:35:06] 2025-12-02 23:34:30,439 | INFO     | . payload setup = 58 s
[2025-12-02 18:35:06] 2025-12-02 23:34:30,439 | INFO     | . stage-in = 0 s
[2025-12-02 18:35:06] 2025-12-02 23:34:30,439 | INFO     | . payload execution = 134312 s
[2025-12-02 18:35:06] 2025-12-02 23:34:30,439 | INFO     | . stage-out = 17 s
[2025-12-02 18:35:06] 2025-12-02 23:34:30,439 | INFO     | . log creation = 5 s
[2025-12-02 18:35:06] 2025-12-02 23:34:30,440 | INFO     | ..............................
[2025-12-02 18:35:06] 2025-12-02 23:34:31,184 | INFO     | 
[2025-12-02 18:35:06] 2025-12-02 23:34:31,184 | INFO     | job summary report
[2025-12-02 18:35:06] 2025-12-02 23:34:31,185 | INFO     | --------------------------------------------------
[2025-12-02 18:35:06] 2025-12-02 23:34:31,185 | INFO     | PanDA job id: 6899596423
[2025-12-02 18:35:06] 2025-12-02 23:34:31,185 | INFO     | task id: 47556185
[2025-12-02 18:35:06] 2025-12-02 23:34:31,185 | INFO     | errors: (none)
[2025-12-02 18:35:06] 2025-12-02 23:34:31,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 18:35:06] 2025-12-02 23:34:31,185 | INFO     | pilot state: finished 
[2025-12-02 18:35:06] 2025-12-02 23:34:31,185 | INFO     | transexitcode: 0
[2025-12-02 18:35:06] 2025-12-02 23:34:31,185 | INFO     | exeerrorcode: 0
[2025-12-02 18:35:06] 2025-12-02 23:34:31,185 | INFO     | exeerrordiag: 
[2025-12-02 18:35:06] 2025-12-02 23:34:31,185 | INFO     | exitcode: 0
[2025-12-02 18:35:06] 2025-12-02 23:34:31,185 | INFO     | exitmsg: OK
[2025-12-02 18:35:06] 2025-12-02 23:34:31,185 | INFO     | cpuconsumptiontime: 274678 s
[2025-12-02 18:35:06] 2025-12-02 23:34:31,186 | INFO     | nevents: 1000
[2025-12-02 18:35:06] 2025-12-02 23:34:31,186 | INFO     | neventsw: 0
[2025-12-02 18:35:06] 2025-12-02 23:34:31,186 | INFO     | pid: 4044766
[2025-12-02 18:35:06] 2025-12-02 23:34:31,186 | INFO     | pgrp: 4044766
[2025-12-02 18:35:06] 2025-12-02 23:34:31,186 | INFO     | corecount: 8
[2025-12-02 18:35:06] 2025-12-02 23:34:31,186 | INFO     | event service: False
[2025-12-02 18:35:06] 2025-12-02 23:34:31,186 | INFO     | sizes: {0: 2284089, 1: 2284173, 3: 2284201, 4: 2284372, 16: 2284400, 27: 2284428, 38: 2284584, 42: 2284874, 50: 2284930, 134373: 2367982, 134374: 2367981, 134393: 
[2025-12-02 18:35:06] 2025-12-02 23:34:31,186 | INFO     | --------------------------------------------------
[2025-12-02 18:35:06] 2025-12-02 23:34:31,186 | INFO     | 
[2025-12-02 18:35:06] 2025-12-02 23:34:31,186 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-02 18:35:06] 2025-12-02 23:34:31,317 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,318 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,318 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,318 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,318 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,318 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,318 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,318 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,318 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,319 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,319 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,319 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,319 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,319 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 18:35:06] 2025-12-02 23:34:31,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,320 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 18:35:06] 2025-12-02 23:34:31,320 | INFO     | job 6899596423 has completed (purged errors)
[2025-12-02 18:35:06] 2025-12-02 23:34:31,320 | INFO     | overall cleanup function is called
[2025-12-02 18:35:06] 2025-12-02 23:34:32,387 | INFO     | --- collectZombieJob: --- 10, [4044766]
[2025-12-02 18:35:06] 2025-12-02 23:34:32,387 | INFO     | zombie collector waiting for pid 4044766
[2025-12-02 18:35:06] 2025-12-02 23:34:32,388 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 18:35:06] 2025-12-02 23:34:32,388 | INFO     | collected zombie processes
[2025-12-02 18:35:06] 2025-12-02 23:34:32,388 | INFO     | will attempt to kill all subprocesses of pid=4044766
[2025-12-02 18:35:06] 2025-12-02 23:34:34,659 | INFO     | process IDs to be killed: [4044766] (in reverse order)
[2025-12-02 18:35:06] 2025-12-02 23:34:35,919 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 18:35:06] 2025-12-02 23:34:35,919 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 18:35:06] 2025-12-02 23:34:36,107 | INFO     | did not find any defunct processes belonging to 4044766
[2025-12-02 18:35:06] 2025-12-02 23:34:36,214 | INFO     | did not find any defunct processes belonging to 4044766
[2025-12-02 18:35:06] 2025-12-02 23:34:36,225 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 18:35:06] 2025-12-02 23:34:36,226 | INFO     | ready for new job
[2025-12-02 18:35:06] 2025-12-02 23:34:36,226 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 18:35:06] 2025-12-02 23:34:36,249 | INFO     | ***************************************
[2025-12-02 18:35:06] 2025-12-02 23:34:36,249 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 18:35:06] 2025-12-02 23:34:36,249 | INFO     | ***************************************
[2025-12-02 18:35:06] 2025-12-02 23:34:36,249 | INFO     | 
[2025-12-02 18:35:06] 2025-12-02 23:34:36,271 | INFO     | architecture information:
[2025-12-02 18:35:06] 2025-12-02 23:34:36,275 | INFO     | executing command: cat /etc/os-release
[2025-12-02 18:35:06] 2025-12-02 23:34:36,373 | INFO     | cat /etc/os-release:
[2025-12-02 18:35:06] NAME="CentOS Linux"
[2025-12-02 18:35:06] VERSION="7 (Core)"
[2025-12-02 18:35:06] ID="centos"
[2025-12-02 18:35:06] ID_LIKE="rhel fedora"
[2025-12-02 18:35:06] VERSION_ID="7"
[2025-12-02 18:35:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 18:35:06] ANSI_COLOR="0;31"
[2025-12-02 18:35:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 18:35:06] HOME_URL="https://www.centos.org/"
[2025-12-02 18:35:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 18:35:06] 
[2025-12-02 18:35:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 18:35:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 18:35:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 18:35:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 18:35:06] 
[2025-12-02 18:35:06] 2025-12-02 23:34:36,374 | INFO     | ***************************************
[2025-12-02 18:35:06] 2025-12-02 23:34:36,877 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-02 18:35:06] 2025-12-02 23:34:37,006 | INFO     | sufficient remaining disk space (70281854976 B)
[2025-12-02 18:35:06] 2025-12-02 23:34:37,006 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 18:35:06] 2025-12-02 23:34:37,006 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 18:35:06] 2025-12-02 23:34:37,006 | INFO     | update_server=False
[2025-12-02 18:35:06] 2025-12-02 23:34:37,006 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 18:35:06] 2025-12-02 23:34:37,007 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 18:35:06] 2025-12-02 23:34:37,007 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 18:35:06] 2025-12-02 23:34:37,007 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 18:35:06] 2025-12-02 23:34:37,130 | INFO     | all payload control threads have been joined
[2025-12-02 18:35:06] 2025-12-02 23:34:37,657 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 18:35:06] 2025-12-02 23:34:37,658 | INFO     | aborting loop
[2025-12-02 18:35:06] 2025-12-02 23:34:37,877 | INFO     | all data control threads have been joined
[2025-12-02 18:35:06] 2025-12-02 23:34:38,012 | INFO     | [job] retrieve thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:38,013 | INFO     | [job] queue monitor thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:38,115 | INFO     | [job] validate thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:38,119 | INFO     | [data] copytool_in thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:38,136 | INFO     | [payload] control thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:38,220 | INFO     | [payload] validate_post thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:38,231 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:38,452 | INFO     | all job control threads have been joined
[2025-12-02 18:35:06] 2025-12-02 23:34:38,670 | INFO     | [job] job monitor thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:38,677 | INFO     | [monitor] cgroup control has ended
[2025-12-02 18:35:06] 2025-12-02 23:34:38,817 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:38,883 | INFO     | [data] control thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:39,013 | INFO     | [data] copytool_out thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:39,479 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:39,480 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:39,493 | INFO     | [job] control thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:39,564 | INFO     | [payload] failed_post thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:41,014 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 18:35:06] 2025-12-02 23:34:42,362 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140149249005376)>', '<ExcThread(monitor, started 140148490606336)>']
[2025-12-02 18:35:06] 2025-12-02 23:34:47,388 | INFO     | all workflow threads have been joined
[2025-12-02 18:35:06] 2025-12-02 23:34:47,389 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 18:35:06] 2025-12-02 23:34:47,389 | INFO     | traces error code: 0
[2025-12-02 18:35:06] 2025-12-02 23:34:47,389 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 18:35:06] 2025-12-02 23:35:04,054 | INFO     | PID=4032712 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 18:35:06] 2025-12-02 23:35:04,054 | INFO     | .. there are 66 such processes running
[2025-12-02 18:35:06] 2025-12-02 23:35:04,054 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 18:35:06] 2025-12-02 23:35:04,054 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 18:35:06] 2025-12-02 23:35:04,054 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 18:35:06] 2025-12-02 23:35:04,055 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 18:35:06] 2025-12-02 23:35:04,055 | INFO     | [monitor] control thread has ended
[2025-12-02 18:35:06] 2025-12-02 23:35:04,904 [wrapper] ==== pilot stdout END ====
[2025-12-02 18:35:06] 2025-12-02 23:35:04,922 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 18:35:06] 2025-12-02 23:35:04,933 [wrapper] pilotpid: 4032712
[2025-12-02 18:35:06] 2025-12-02 23:35:04,960 [wrapper] Pilot exit status: 0
[2025-12-02 18:35:06] 2025-12-02 23:35:05,141 [wrapper] pandaids: 6899596423 6899596423
[2025-12-02 18:35:06] 2025-12-02 23:35:05,644 [wrapper] cleanup supervisor_pilot  481109 4032713
[2025-12-02 18:35:06] 2025-12-02 23:35:05,655 [wrapper] Test setup, not cleaning
[2025-12-02 18:35:06] 2025-12-02 23:35:05,658 [wrapper] apfmon messages muted
[2025-12-02 18:35:06] 2025-12-02 23:35:05,663 [wrapper] ==== wrapper stdout END ====
[2025-12-02 18:35:06] 2025-12-02 23:35:05,671 [wrapper] ==== wrapper stderr END ====
[2025-12-02 18:35:06]  *** Error codes and diagnostics ***
[2025-12-02 18:35:06]     "exeErrorCode": 0,
[2025-12-02 18:35:06]     "exeErrorDiag": "",
[2025-12-02 18:35:06]     "pilotErrorCode": 0,
[2025-12-02 18:35:06]     "pilotErrorDiag": "",
[2025-12-02 18:35:06]  *** Listing of results directory ***
[2025-12-02 18:35:06] total 1729300
[2025-12-02 18:35:06] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 27 03:46 pilot3.tar.gz
[2025-12-02 18:35:06] -rwx------. 1 boincer umatlas     36292 Nov 27 03:46 runpilot2-wrapper.sh
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 27 03:49 queuedata.json
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas       100 Nov 30 00:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 18:35:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 30 00:23 run_atlas
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas       105 Nov 30 00:23 job.xml
[2025-12-02 18:35:06] -rw-r--r--. 3 boincer umatlas 408665737 Nov 30 00:23 EVNT.47483658._004341.pool.root.1
[2025-12-02 18:35:06] -rw-r--r--. 3 boincer umatlas 408665737 Nov 30 00:23 ATLAS.root_0
[2025-12-02 18:35:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 00:23 start_atlas.sh
[2025-12-02 18:35:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 30 00:23 shared
[2025-12-02 18:35:06] -rw-r--r--. 2 boincer umatlas    590103 Nov 30 00:23 input.tar.gz
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas         0 Nov 30 00:23 boinc_lockfile
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas      2787 Dec  1 05:11 pandaJob.out
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas        57 Dec  1 05:11 setup.sh.local
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas    992532 Dec  1 05:12 agis_schedconf.cvmfs.json
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas       534 Dec  2 17:58 boinc_task_state.xml
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas      6879 Dec  2 18:27 init_data.xml
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas 914721777 Dec  2 18:32 HITS.47556185._001042.pool.root.1
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas      1083 Dec  2 18:33 memory_monitor_summary.json
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas   1516240 Dec  2 18:33 agis_ddmendpoints.agis.ALL.json
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas   2868250 Dec  2 18:33 log.47556185._001042.job.log.tgz.1
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas        97 Dec  2 18:34 pilot_heartbeat.json
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas      8658 Dec  2 18:34 heartbeat.json
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 18:34 boinc_mmap_file
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas        30 Dec  2 18:34 wrapper_checkpoint.txt
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas       823 Dec  2 18:35 pilotlog.txt
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas  14548735 Dec  2 18:35 log.47556185._001042.job.log.1
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas       353 Dec  2 18:35 output.list
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas       620 Dec  2 18:35 runtime_log
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas  17438720 Dec  2 18:35 result.tar.gz
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas       793 Dec  2 18:35 UQnKDmPpmi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2nNKDmo9JLcn.diag
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas      9434 Dec  2 18:35 runtime_log.err
[2025-12-02 18:35:06] -rw-r--r--. 1 boincer umatlas     24117 Dec  2 18:35 stderr.txt
[2025-12-02 18:35:06] HITS file was successfully produced:
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas 914721777 Dec  2 18:32 shared/HITS.pool.root.1
[2025-12-02 18:35:06]  *** Contents of shared directory: ***
[2025-12-02 18:35:06] total 1310004
[2025-12-02 18:35:06] -rw-r--r--. 3 boincer umatlas 408665737 Nov 30 00:23 ATLAS.root_0
[2025-12-02 18:35:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 00:23 start_atlas.sh
[2025-12-02 18:35:06] -rw-r--r--. 2 boincer umatlas    590103 Nov 30 00:23 input.tar.gz
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas 914721777 Dec  2 18:32 HITS.pool.root.1
[2025-12-02 18:35:06] -rw-------. 1 boincer umatlas  17438720 Dec  2 18:35 result.tar.gz
18:35:08 (4027146): run_atlas exited; CPU time 280477.542322
18:35:08 (4027146): called boinc_finish(0)

</stderr_txt>
]]>

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