Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:28 (1709632): wrapper (7.7.26015): starting
00:00:28 (1709632): wrapper: running run_atlas (--nthreads 9)
[2025-11-30 00:00:28] Arguments: --nthreads 9
[2025-11-30 00:00:28] Threads: 9
[2025-11-30 00:00:28] Checking for CVMFS
[2025-11-30 00:00:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 00:00:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 00:00:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 00:00:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 00:00:30] 2.13.3.0 11888 35315 367704 153468 0 323 19745597 32935936 26026 16776704 0 185084683 99.526 225034439 35196 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-30 00:00:30] CVMFS is ok
[2025-11-30 00:00:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 00:00:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 00:00:30] Further information can be found at the LHC@home message board.
[2025-11-30 00:00:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 00:00:30] Checking for apptainer binary...
[2025-11-30 00:00:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 00:00:30] Running /usr/bin/apptainer --version
[2025-11-30 00:00:30] apptainer version 1.4.4-1.el9
[2025-11-30 00:00:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 00:00:31] c6-2-11-3.aglt2.org
[2025-11-30 00:00:31] apptainer works
[2025-11-30 00:00:31] Set ATHENA_PROC_NUMBER=9
[2025-11-30 00:00:31] Set ATHENA_CORE_NUMBER=9
[2025-11-30 00:00:31] Starting ATLAS job with PandaID=6899597202
[2025-11-30 00:00:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:40:14 (1709632): BOINC client no longer exists - exiting
04:40:14 (1709632): timer handler: client dead, exiting
04:46:36 (3854077): wrapper (7.7.26015): starting
04:46:36 (3854077): wrapper: running run_atlas (--nthreads 9)
[2025-12-01 04:46:36] Arguments: --nthreads 9
[2025-12-01 04:46:36] Threads: 9
[2025-12-01 04:46:36] This job has been restarted, cleaning up previous attempt
[2025-12-01 04:46:37] Checking for CVMFS
[2025-12-01 04:46:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 04:46:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 04:46:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 04:46:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 04:46:38] 2.13.3.0 11888 37042 382644 153512 0 324 22618920 32935936 25702 16776704 0 193513549 99.519 240140231 35395 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-01 04:46:38] CVMFS is ok
[2025-12-01 04:46:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 04:46:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 04:46:38] Further information can be found at the LHC@home message board.
[2025-12-01 04:46:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 04:46:38] Checking for apptainer binary...
[2025-12-01 04:46:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 04:46:38] Running /usr/bin/apptainer --version
[2025-12-01 04:46:38] apptainer version 1.4.4-1.el9
[2025-12-01 04:46:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 04:46:38] c6-2-11-3.aglt2.org
[2025-12-01 04:46:38] apptainer works
[2025-12-01 04:46:38] Set ATHENA_PROC_NUMBER=9
[2025-12-01 04:46:38] Set ATHENA_CORE_NUMBER=9
[2025-12-01 04:46:39] Starting ATLAS job with PandaID=6899597202
[2025-12-01 04:46:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 04:21:04]  *** The last 200 lines of the pilot log: ***
[2025-12-02 04:21:04] 2025-12-02 09:20:00,438 | INFO     | monitor loop #4023: job 0:6899597202 is in state 'finished'
[2025-12-02 04:21:04] 2025-12-02 09:20:00,439 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:21:04] 2025-12-02 09:20:02,103 | INFO     | PID=3869603 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 04:21:04] 2025-12-02 09:20:02,103 | INFO     | .. there are 66 such processes running
[2025-12-02 04:21:04] 2025-12-02 09:20:02,967 | INFO     | monitor loop #4024: job 0:6899597202 is in state 'finished'
[2025-12-02 04:21:04] 2025-12-02 09:20:02,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:21:04] 2025-12-02 09:20:03,104 | INFO     | time since job start (84764s) is within the limit (172800.0s)
[2025-12-02 04:21:04] 2025-12-02 09:20:05,119 | INFO     | time since job start (84766s) is within the limit (172800.0s)
[2025-12-02 04:21:04] 2025-12-02 09:20:05,479 | INFO     | monitor loop #4025: job 0:6899597202 is in state 'finished'
[2025-12-02 04:21:04] 2025-12-02 09:20:05,480 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:21:04] 2025-12-02 09:20:07,126 | INFO     | time since job start (84768s) is within the limit (172800.0s)
[2025-12-02 04:21:04] 2025-12-02 09:20:07,986 | INFO     | monitor loop #4026: job 0:6899597202 is in state 'finished'
[2025-12-02 04:21:04] 2025-12-02 09:20:07,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:21:04] 2025-12-02 09:20:08,433 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 04:21:04] 2025-12-02 09:20:08,496 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2680.9866249999995
[2025-12-02 04:21:04] 2025-12-02 09:20:08,606 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6899597202/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 04:21:04] 2025-12-02 09:20:08,606 | INFO     | extracted standard info from prmon json
[2025-12-02 04:21:04] 2025-12-02 09:20:08,606 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 04:21:04] 2025-12-02 09:20:08,607 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 04:21:04] 2025-12-02 09:20:08,765 | INFO     | fitting pss+swap vs Time
[2025-12-02 04:21:04] 2025-12-02 09:20:08,768 | INFO     | sum of square deviations: 829248139227.3862
[2025-12-02 04:21:04] 2025-12-02 09:20:09,023 | INFO     | sum of deviations: 3020963880107.037
[2025-12-02 04:21:04] 2025-12-02 09:20:09,024 | INFO     | mean x: 1764624843.381124
[2025-12-02 04:21:04] 2025-12-02 09:20:09,024 | INFO     | mean y: 3008075.4517291067
[2025-12-02 04:21:04] 2025-12-02 09:20:09,024 | INFO     | intersect: -6425547698.891888
[2025-12-02 04:21:04] 2025-12-02 09:20:09,026 | INFO     | chi2: 18.57159204458252
[2025-12-02 04:21:04] 2025-12-02 09:20:09,048 | INFO     | sum of square deviations: 820321610167.828
[2025-12-02 04:21:04] 2025-12-02 09:20:09,197 | INFO     | time since job start (84770s) is within the limit (172800.0s)
[2025-12-02 04:21:04] 2025-12-02 09:20:09,557 | INFO     | sum of deviations: 3557823959441.8105
[2025-12-02 04:21:04] 2025-12-02 09:20:09,579 | INFO     | mean x: 1764624690.8987708
[2025-12-02 04:21:04] 2025-12-02 09:20:09,580 | INFO     | mean y: 3017243.948662328
[2025-12-02 04:21:04] 2025-12-02 09:20:09,580 | INFO     | intersect: -7650351784.593443
[2025-12-02 04:21:04] 2025-12-02 09:20:09,582 | INFO     | chi2: 14.657931094509358
[2025-12-02 04:21:04] 2025-12-02 09:20:09,582 | INFO     | current chi2=14.657931094509358 (change=21.07337346565723 %)
[2025-12-02 04:21:04] 2025-12-02 09:20:09,582 | INFO     | right removable region: 1382
[2025-12-02 04:21:04] 2025-12-02 09:20:09,622 | INFO     | sum of square deviations: 820317477417.8284
[2025-12-02 04:21:04] 2025-12-02 09:20:10,079 | INFO     | sum of deviations: 2464699426477.3057
[2025-12-02 04:21:04] 2025-12-02 09:20:10,080 | INFO     | mean x: 1764624995.8987708
[2025-12-02 04:21:04] 2025-12-02 09:20:10,080 | INFO     | mean y: 3017573.887924801
[2025-12-02 04:21:04] 2025-12-02 09:20:10,080 | INFO     | intersect: -5298917756.113485
[2025-12-02 04:21:04] 2025-12-02 09:20:10,082 | INFO     | chi2: 14.847384597633539
[2025-12-02 04:21:04] 2025-12-02 09:20:10,108 | INFO     | current chi2=14.847384597633539 (change=20.053248197616753 %)
[2025-12-02 04:21:04] 2025-12-02 09:20:10,109 | INFO     | left removable region: 10
[2025-12-02 04:21:04] 2025-12-02 09:20:10,119 | INFO     | sum of square deviations: 800901334857.3562
[2025-12-02 04:21:04] 2025-12-02 09:20:10,617 | INFO     | monitor loop #4027: job 0:6899597202 is in state 'finished'
[2025-12-02 04:21:04] 2025-12-02 09:20:10,617 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:21:04] 2025-12-02 09:20:10,691 | INFO     | sum of deviations: 2752288636780.055
[2025-12-02 04:21:04] 2025-12-02 09:20:10,691 | INFO     | mean x: 1764624965.4358602
[2025-12-02 04:21:04] 2025-12-02 09:20:10,692 | INFO     | mean y: 3034235.5517492713
[2025-12-02 04:21:04] 2025-12-02 09:20:10,692 | INFO     | intersect: -6061080068.131517
[2025-12-02 04:21:04] 2025-12-02 09:20:10,693 | INFO     | chi2: 8.95275885671658
[2025-12-02 04:21:04] 2025-12-02 09:20:10,694 | INFO     | current memory leak: 3.44 B/s (using 1372 data points, chi2=8.95)
[2025-12-02 04:21:04] 2025-12-02 09:20:10,703 | INFO     | could have reported an average CPU frequency of 2680 MHz (49 samples)
[2025-12-02 04:21:04] 2025-12-02 09:20:10,704 | INFO     | ..............................
[2025-12-02 04:21:04] 2025-12-02 09:20:10,704 | INFO     | . Timing measurements:
[2025-12-02 04:21:04] 2025-12-02 09:20:10,704 | INFO     | . get job = 0 s
[2025-12-02 04:21:04] 2025-12-02 09:20:10,704 | INFO     | . initial setup = 3 s
[2025-12-02 04:21:04] 2025-12-02 09:20:10,704 | INFO     | . payload setup = 26 s
[2025-12-02 04:21:04] 2025-12-02 09:20:10,704 | INFO     | . stage-in = 0 s
[2025-12-02 04:21:04] 2025-12-02 09:20:10,704 | INFO     | . payload execution = 84644 s
[2025-12-02 04:21:04] 2025-12-02 09:20:10,704 | INFO     | . stage-out = 21 s
[2025-12-02 04:21:04] 2025-12-02 09:20:10,704 | INFO     | . log creation = 10 s
[2025-12-02 04:21:04] 2025-12-02 09:20:10,704 | INFO     | ..............................
[2025-12-02 04:21:04] 2025-12-02 09:20:11,264 | INFO     | time since job start (84772s) is within the limit (172800.0s)
[2025-12-02 04:21:04] 2025-12-02 09:20:11,356 | INFO     | 
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | job summary report
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | --------------------------------------------------
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | PanDA job id: 6899597202
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | task id: 47556185
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | errors: (none)
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | pilot state: finished 
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | transexitcode: 0
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | exeerrorcode: 0
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | exeerrordiag: 
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | exitcode: 0
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | exitmsg: OK
[2025-12-02 04:21:04] 2025-12-02 09:20:11,357 | INFO     | cpuconsumptiontime: 258682 s
[2025-12-02 04:21:04] 2025-12-02 09:20:11,358 | INFO     | nevents: 1000
[2025-12-02 04:21:04] 2025-12-02 09:20:11,358 | INFO     | neventsw: 0
[2025-12-02 04:21:04] 2025-12-02 09:20:11,358 | INFO     | pid: 3896546
[2025-12-02 04:21:04] 2025-12-02 09:20:11,358 | INFO     | pgrp: 3896546
[2025-12-02 04:21:04] 2025-12-02 09:20:11,358 | INFO     | corecount: 9
[2025-12-02 04:21:04] 2025-12-02 09:20:11,358 | INFO     | event service: False
[2025-12-02 04:21:04] 2025-12-02 09:20:11,358 | INFO     | sizes: {0: 2284145, 1: 2284344, 12: 2284344, 17: 2284634, 23: 2284662, 84672: 2347477, 84694: 2356471, 84695: 2356527, 84731: 2356773}
[2025-12-02 04:21:04] 2025-12-02 09:20:11,358 | INFO     | --------------------------------------------------
[2025-12-02 04:21:04] 2025-12-02 09:20:11,358 | INFO     | 
[2025-12-02 04:21:04] 2025-12-02 09:20:11,358 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-12-02 04:21:04] 2025-12-02 09:20:11,634 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,634 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,634 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,634 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,634 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,634 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,634 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,635 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,635 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,635 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,635 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,635 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,635 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,635 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,654 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,654 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,655 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,655 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 04:21:04] 2025-12-02 09:20:11,655 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,655 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 04:21:04] 2025-12-02 09:20:11,655 | INFO     | job 6899597202 has completed (purged errors)
[2025-12-02 04:21:04] 2025-12-02 09:20:11,655 | INFO     | overall cleanup function is called
[2025-12-02 04:21:04] 2025-12-02 09:20:12,751 | INFO     | --- collectZombieJob: --- 10, [3896546]
[2025-12-02 04:21:04] 2025-12-02 09:20:12,751 | INFO     | zombie collector waiting for pid 3896546
[2025-12-02 04:21:04] 2025-12-02 09:20:12,752 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 04:21:04] 2025-12-02 09:20:12,752 | INFO     | collected zombie processes
[2025-12-02 04:21:04] 2025-12-02 09:20:12,752 | INFO     | will attempt to kill all subprocesses of pid=3896546
[2025-12-02 04:21:04] 2025-12-02 09:20:16,942 | INFO     | process IDs to be killed: [3896546] (in reverse order)
[2025-12-02 04:21:04] 2025-12-02 09:20:17,862 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 04:21:04] 2025-12-02 09:20:17,862 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 04:21:04] 2025-12-02 09:20:17,933 | INFO     | did not find any defunct processes belonging to 3896546
[2025-12-02 04:21:04] 2025-12-02 09:20:18,189 | INFO     | did not find any defunct processes belonging to 3896546
[2025-12-02 04:21:04] 2025-12-02 09:20:18,224 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 04:21:04] 2025-12-02 09:20:18,224 | INFO     | ready for new job
[2025-12-02 04:21:04] 2025-12-02 09:20:18,224 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 04:21:04] 2025-12-02 09:20:18,247 | INFO     | ***************************************
[2025-12-02 04:21:04] 2025-12-02 09:20:18,260 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 04:21:04] 2025-12-02 09:20:18,261 | INFO     | ***************************************
[2025-12-02 04:21:04] 2025-12-02 09:20:18,261 | INFO     | 
[2025-12-02 04:21:04] 2025-12-02 09:20:18,273 | INFO     | architecture information:
[2025-12-02 04:21:04] 2025-12-02 09:20:18,336 | INFO     | executing command: cat /etc/os-release
[2025-12-02 04:21:04] 2025-12-02 09:20:18,474 | INFO     | cat /etc/os-release:
[2025-12-02 04:21:04] NAME="CentOS Linux"
[2025-12-02 04:21:04] VERSION="7 (Core)"
[2025-12-02 04:21:04] ID="centos"
[2025-12-02 04:21:04] ID_LIKE="rhel fedora"
[2025-12-02 04:21:04] VERSION_ID="7"
[2025-12-02 04:21:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 04:21:04] ANSI_COLOR="0;31"
[2025-12-02 04:21:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 04:21:04] HOME_URL="https://www.centos.org/"
[2025-12-02 04:21:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 04:21:04] 
[2025-12-02 04:21:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 04:21:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 04:21:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 04:21:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 04:21:04] 
[2025-12-02 04:21:04] 2025-12-02 09:20:18,475 | INFO     | ***************************************
[2025-12-02 04:21:04] 2025-12-02 09:20:18,996 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-12-02 04:21:04] 2025-12-02 09:20:19,140 | INFO     | sufficient remaining disk space (71940702208 B)
[2025-12-02 04:21:04] 2025-12-02 09:20:19,140 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 04:21:04] 2025-12-02 09:20:19,140 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 04:21:04] 2025-12-02 09:20:19,141 | INFO     | update_server=False
[2025-12-02 04:21:04] 2025-12-02 09:20:19,141 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 04:21:04] 2025-12-02 09:20:19,213 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:21:04] 2025-12-02 09:20:19,214 | INFO     | aborting loop
[2025-12-02 04:21:04] 2025-12-02 09:20:19,745 | INFO     | all payload control threads have been joined
[2025-12-02 04:21:04] 2025-12-02 09:20:19,932 | INFO     | all job control threads have been joined
[2025-12-02 04:21:04] 2025-12-02 09:20:20,067 | INFO     | all data control threads have been joined
[2025-12-02 04:21:04] 2025-12-02 09:20:20,146 | INFO     | [job] retrieve thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:20,219 | INFO     | [job] job monitor thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:20,477 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 04:21:04] 2025-12-02 09:20:20,516 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:21:04] 2025-12-02 09:20:20,749 | INFO     | [payload] failed_post thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:20,756 | INFO     | [payload] control thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:20,938 | INFO     | [job] control thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:21,073 | INFO     | [data] control thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:21,176 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:21,224 | INFO     | [data] copytool_in thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:21,225 | INFO     | [job] validate thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:21,225 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:21,395 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:21,530 | INFO     | [job] queue monitor thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:21,554 | INFO     | [payload] validate_post thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:21,649 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:22,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 04:21:04] 2025-12-02 09:20:22,484 | INFO     | [data] copytool_out thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:26,181 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 04:21:04] 2025-12-02 09:20:49,594 | INFO     | PID=3869603 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 04:21:04] 2025-12-02 09:20:49,594 | INFO     | .. there are 66 such processes running
[2025-12-02 04:21:04] 2025-12-02 09:20:49,594 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 04:21:04] 2025-12-02 09:20:49,594 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 04:21:04] 2025-12-02 09:20:49,594 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 04:21:04] 2025-12-02 09:20:56,224 | INFO     | [monitor] cgroup control has ended
[2025-12-02 04:21:04] 2025-12-02 09:20:56,706 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140569769281344)>', '<ExcThread(monitor, started 140568793421568)>']
[2025-12-02 04:21:04] 2025-12-02 09:20:57,651 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 04:21:04] 2025-12-02 09:20:57,651 | INFO     | [monitor] control thread has ended
[2025-12-02 04:21:04] 2025-12-02 09:21:01,732 | INFO     | all workflow threads have been joined
[2025-12-02 04:21:04] 2025-12-02 09:21:01,732 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 04:21:04] 2025-12-02 09:21:01,733 | INFO     | traces error code: 0
[2025-12-02 04:21:04] 2025-12-02 09:21:01,733 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 04:21:04] 2025-12-02 09:21:03,401 [wrapper] ==== pilot stdout END ====
[2025-12-02 04:21:04] 2025-12-02 09:21:03,403 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 04:21:04] 2025-12-02 09:21:03,405 [wrapper] pilotpid: 3869603
[2025-12-02 04:21:04] 2025-12-02 09:21:03,407 [wrapper] Pilot exit status: 0
[2025-12-02 04:21:04] 2025-12-02 09:21:03,457 [wrapper] pandaids: 6899597202 6899597202
[2025-12-02 04:21:04] 2025-12-02 09:21:03,749 [wrapper] cleanup supervisor_pilot 1209132 3869604
[2025-12-02 04:21:04] 2025-12-02 09:21:03,761 [wrapper] Test setup, not cleaning
[2025-12-02 04:21:04] 2025-12-02 09:21:03,771 [wrapper] apfmon messages muted
[2025-12-02 04:21:04] 2025-12-02 09:21:03,788 [wrapper] ==== wrapper stdout END ====
[2025-12-02 04:21:04] 2025-12-02 09:21:03,792 [wrapper] ==== wrapper stderr END ====
[2025-12-02 04:21:04]  *** Error codes and diagnostics ***
[2025-12-02 04:21:04]     "exeErrorCode": 0,
[2025-12-02 04:21:04]     "exeErrorDiag": "",
[2025-12-02 04:21:04]     "pilotErrorCode": 0,
[2025-12-02 04:21:04]     "pilotErrorDiag": "",
[2025-12-02 04:21:04]  *** Listing of results directory ***
[2025-12-02 04:21:04] total 1732056
[2025-12-02 04:21:04] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 27 03:46 pilot3.tar.gz
[2025-12-02 04:21:04] -rwx------. 1 boincer umatlas     36292 Nov 27 03:47 runpilot2-wrapper.sh
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 27 03:49 queuedata.json
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas       100 Nov 30 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 04:21:04] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 30 00:00 run_atlas
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas       105 Nov 30 00:00 job.xml
[2025-12-02 04:21:04] -rw-r--r--. 3 boincer umatlas 410253606 Nov 30 00:00 EVNT.47483658._004343.pool.root.1
[2025-12-02 04:21:04] -rw-r--r--. 3 boincer umatlas 410253606 Nov 30 00:00 ATLAS.root_0
[2025-12-02 04:21:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 00:00 start_atlas.sh
[2025-12-02 04:21:04] drwxrwx--x. 2 boincer umatlas      4096 Nov 30 00:00 shared
[2025-12-02 04:21:04] -rw-r--r--. 2 boincer umatlas    590108 Nov 30 00:00 input.tar.gz
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas         0 Nov 30 00:00 boinc_lockfile
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas      2787 Dec  1 04:46 pandaJob.out
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas        57 Dec  1 04:46 setup.sh.local
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas    992532 Dec  1 04:47 agis_schedconf.cvmfs.json
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas       534 Dec  2 03:54 boinc_task_state.xml
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas 925776018 Dec  2 04:16 HITS.47556185._001062.pool.root.1
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas      6879 Dec  2 04:18 init_data.xml
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas      1082 Dec  2 04:19 memory_monitor_summary.json
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas   1516240 Dec  2 04:19 agis_ddmendpoints.agis.ALL.json
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas   2437570 Dec  2 04:19 log.47556185._001062.job.log.tgz.1
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas        96 Dec  2 04:20 pilot_heartbeat.json
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas      8645 Dec  2 04:20 heartbeat.json
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas        29 Dec  2 04:20 wrapper_checkpoint.txt
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas      4824 Dec  2 04:21 pilotlog.txt
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas   9265482 Dec  2 04:21 log.47556185._001062.job.log.1
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 04:21 boinc_mmap_file
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas       353 Dec  2 04:21 output.list
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas       620 Dec  2 04:21 runtime_log
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas  11724800 Dec  2 04:21 result.tar.gz
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas      9433 Dec  2 04:21 runtime_log.err
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas       790 Dec  2 04:21 qIsLDm4pmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGeKKDmwtQSFo.diag
[2025-12-02 04:21:04] -rw-r--r--. 1 boincer umatlas     24152 Dec  2 04:21 stderr.txt
[2025-12-02 04:21:04] HITS file was successfully produced:
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas 925776018 Dec  2 04:16 shared/HITS.pool.root.1
[2025-12-02 04:21:04]  *** Contents of shared directory: ***
[2025-12-02 04:21:04] total 1316776
[2025-12-02 04:21:04] -rw-r--r--. 3 boincer umatlas 410253606 Nov 30 00:00 ATLAS.root_0
[2025-12-02 04:21:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 00:00 start_atlas.sh
[2025-12-02 04:21:04] -rw-r--r--. 2 boincer umatlas    590108 Nov 30 00:00 input.tar.gz
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas 925776018 Dec  2 04:16 HITS.pool.root.1
[2025-12-02 04:21:04] -rw-------. 1 boincer umatlas  11724800 Dec  2 04:21 result.tar.gz
04:21:26 (3854077): run_atlas exited; CPU time 262063.407879
04:21:26 (3854077): called boinc_finish(0)

</stderr_txt>
]]>

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