Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:38:19 (29846): wrapper (7.7.26015): starting
04:38:19 (29846): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 04:38:19] Arguments: --nthreads 8
[2025-12-02 04:38:19] Threads: 8
[2025-12-02 04:38:19] Checking for CVMFS
[2025-12-02 04:38:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 04:38:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 04:38:20] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 04:38:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 04:38:21] 2.11.2.0 16837 293499 138604 153542 1 85 14797222 25165824 2554 130560 11 124689614 99.869 76600111 3266 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 04:38:21] CVMFS is ok
[2025-12-02 04:38:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 04:38:21] Checking for apptainer binary...
[2025-12-02 04:38:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 04:38:21] Running /usr/bin/apptainer --version
[2025-12-02 04:38:21] apptainer version 1.3.2-1.el7
[2025-12-02 04:38:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 04:38:28] cg-vwn322.simple-grid.lan
[2025-12-02 04:38:28] apptainer works
[2025-12-02 04:38:28] Set ATHENA_PROC_NUMBER=8
[2025-12-02 04:38:28] Set ATHENA_CORE_NUMBER=8
[2025-12-02 04:38:28] Starting ATLAS job with PandaID=6899792500
[2025-12-02 04:38:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 04:06:30]  *** The last 200 lines of the pilot log: ***
[2025-12-03 04:06:31] 2025-12-03 03:05:20,862 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 04:06:31] 2025-12-03 03:05:21,387 | INFO     | PID=1261 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 04:06:31] 2025-12-03 03:05:21,387 | INFO     | .. there are 9 such processes running
[2025-12-03 04:06:31] 2025-12-03 03:05:22,392 | INFO     | time since job start (84209s) is within the limit (172800.0s)
[2025-12-03 04:06:31] 2025-12-03 03:05:23,368 | INFO     | monitor loop #5674: job 0:6899792500 is in state 'finished'
[2025-12-03 04:06:31] 2025-12-03 03:05:23,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 04:06:31] 2025-12-03 03:05:24,410 | INFO     | time since job start (84211s) is within the limit (172800.0s)
[2025-12-03 04:06:31] 2025-12-03 03:05:25,880 | INFO     | monitor loop #5675: job 0:6899792500 is in state 'finished'
[2025-12-03 04:06:31] 2025-12-03 03:05:25,880 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 04:06:31] 2025-12-03 03:05:26,417 | INFO     | time since job start (84213s) is within the limit (172800.0s)
[2025-12-03 04:06:31] 2025-12-03 03:05:28,384 | INFO     | monitor loop #5676: job 0:6899792500 is in state 'finished'
[2025-12-03 04:06:31] 2025-12-03 03:05:28,384 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 04:06:31] 2025-12-03 03:05:28,426 | INFO     | time since job start (84215s) is within the limit (172800.0s)
[2025-12-03 04:06:31] 2025-12-03 03:05:29,022 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 04:06:31] 2025-12-03 03:05:29,024 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 04:06:31] 2025-12-03 03:05:29,027 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6899792500/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 04:06:31] 2025-12-03 03:05:29,027 | INFO     | extracted standard info from prmon json
[2025-12-03 04:06:31] 2025-12-03 03:05:29,027 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 04:06:31] 2025-12-03 03:05:29,027 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 04:06:31] 2025-12-03 03:05:29,078 | INFO     | fitting pss+swap vs Time
[2025-12-03 04:06:31] 2025-12-03 03:05:29,080 | INFO     | sum of square deviations: 799080724047.4773
[2025-12-03 04:06:31] 2025-12-03 03:05:29,183 | INFO     | sum of deviations: 2864122118076.1377
[2025-12-03 04:06:31] 2025-12-03 03:05:29,183 | INFO     | mean x: 1764689183.1130562
[2025-12-03 04:06:31] 2025-12-03 03:05:29,183 | INFO     | mean y: 2851144.7797228303
[2025-12-03 04:06:31] 2025-12-03 03:05:29,183 | INFO     | intersect: -6322273675.254749
[2025-12-03 04:06:31] 2025-12-03 03:05:29,185 | INFO     | chi2: 17.844048304989084
[2025-12-03 04:06:31] 2025-12-03 03:05:29,187 | INFO     | sum of square deviations: 790370356378.7567
[2025-12-03 04:06:31] 2025-12-03 03:05:29,296 | INFO     | sum of deviations: 3334842921234.258
[2025-12-03 04:06:31] 2025-12-03 03:05:29,297 | INFO     | mean x: 1764689030.6171303
[2025-12-03 04:06:31] 2025-12-03 03:05:29,297 | INFO     | mean y: 2859385.5358711565
[2025-12-03 04:06:31] 2025-12-03 03:05:29,297 | INFO     | intersect: -7442967339.161182
[2025-12-03 04:06:31] 2025-12-03 03:05:29,299 | INFO     | chi2: 14.437928506077062
[2025-12-03 04:06:31] 2025-12-03 03:05:29,299 | INFO     | current chi2=14.437928506077062 (change=19.088268204024597 %)
[2025-12-03 04:06:31] 2025-12-03 03:05:29,299 | INFO     | right removable region: 1365
[2025-12-03 04:06:31] 2025-12-03 03:05:29,301 | INFO     | sum of square deviations: 790369425518.7571
[2025-12-03 04:06:31] 2025-12-03 03:05:29,376 | INFO     | sum of deviations: 2305442486567.129
[2025-12-03 04:06:31] 2025-12-03 03:05:29,377 | INFO     | mean x: 1764689335.6171303
[2025-12-03 04:06:31] 2025-12-03 03:05:29,377 | INFO     | mean y: 2860923.9773060028
[2025-12-03 04:06:31] 2025-12-03 03:05:29,377 | INFO     | intersect: -5144592454.869393
[2025-12-03 04:06:31] 2025-12-03 03:05:29,379 | INFO     | chi2: 13.477428681014487
[2025-12-03 04:06:31] 2025-12-03 03:05:29,379 | INFO     | current chi2=13.477428681014487 (change=24.47101436479365 %)
[2025-12-03 04:06:31] 2025-12-03 03:05:29,379 | INFO     | left removable region: 10
[2025-12-03 04:06:31] 2025-12-03 03:05:29,381 | INFO     | sum of square deviations: 771429005323.4197
[2025-12-03 04:06:31] 2025-12-03 03:05:29,477 | INFO     | sum of deviations: 2463445850741.9546
[2025-12-03 04:06:31] 2025-12-03 03:05:29,477 | INFO     | mean x: 1764689305.1261992
[2025-12-03 04:06:31] 2025-12-03 03:05:29,477 | INFO     | mean y: 2878815.871586716
[2025-12-03 04:06:31] 2025-12-03 03:05:29,477 | INFO     | intersect: -5632398723.037231
[2025-12-03 04:06:31] 2025-12-03 03:05:29,479 | INFO     | chi2: 6.588638347586447
[2025-12-03 04:06:31] 2025-12-03 03:05:29,479 | INFO     | current memory leak: 3.19 B/s (using 1355 data points, chi2=6.59)
[2025-12-03 04:06:31] 2025-12-03 03:05:29,481 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-03 04:06:31] 2025-12-03 03:05:29,481 | INFO     | ..............................
[2025-12-03 04:06:31] 2025-12-03 03:05:29,481 | INFO     | . Timing measurements:
[2025-12-03 04:06:31] 2025-12-03 03:05:29,481 | INFO     | . get job = 0 s
[2025-12-03 04:06:31] 2025-12-03 03:05:29,481 | INFO     | . initial setup = 5 s
[2025-12-03 04:06:31] 2025-12-03 03:05:29,481 | INFO     | . payload setup = 141 s
[2025-12-03 04:06:31] 2025-12-03 03:05:29,481 | INFO     | . stage-in = 0 s
[2025-12-03 04:06:31] 2025-12-03 03:05:29,481 | INFO     | . payload execution = 83778 s
[2025-12-03 04:06:31] 2025-12-03 03:05:29,481 | INFO     | . stage-out = 8 s
[2025-12-03 04:06:31] 2025-12-03 03:05:29,481 | INFO     | . log creation = 3 s
[2025-12-03 04:06:31] 2025-12-03 03:05:29,481 | INFO     | ..............................
[2025-12-03 04:06:31] 2025-12-03 03:05:30,143 | INFO     | 
[2025-12-03 04:06:31] 2025-12-03 03:05:30,143 | INFO     | job summary report
[2025-12-03 04:06:31] 2025-12-03 03:05:30,143 | INFO     | --------------------------------------------------
[2025-12-03 04:06:31] 2025-12-03 03:05:30,143 | INFO     | PanDA job id: 6899792500
[2025-12-03 04:06:31] 2025-12-03 03:05:30,143 | INFO     | task id: 47556161
[2025-12-03 04:06:31] 2025-12-03 03:05:30,143 | INFO     | errors: (none)
[2025-12-03 04:06:31] 2025-12-03 03:05:30,143 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 04:06:31] 2025-12-03 03:05:30,143 | INFO     | pilot state: finished 
[2025-12-03 04:06:31] 2025-12-03 03:05:30,144 | INFO     | transexitcode: 0
[2025-12-03 04:06:31] 2025-12-03 03:05:30,144 | INFO     | exeerrorcode: 0
[2025-12-03 04:06:31] 2025-12-03 03:05:30,144 | INFO     | exeerrordiag: 
[2025-12-03 04:06:31] 2025-12-03 03:05:30,144 | INFO     | exitcode: 0
[2025-12-03 04:06:31] 2025-12-03 03:05:30,144 | INFO     | exitmsg: OK
[2025-12-03 04:06:31] 2025-12-03 03:05:30,144 | INFO     | cpuconsumptiontime: 315024 s
[2025-12-03 04:06:31] 2025-12-03 03:05:30,144 | INFO     | nevents: 1000
[2025-12-03 04:06:31] 2025-12-03 03:05:30,144 | INFO     | neventsw: 0
[2025-12-03 04:06:31] 2025-12-03 03:05:30,144 | INFO     | pid: 7857
[2025-12-03 04:06:31] 2025-12-03 03:05:30,144 | INFO     | pgrp: 7857
[2025-12-03 04:06:31] 2025-12-03 03:05:30,144 | INFO     | corecount: 8
[2025-12-03 04:06:31] 2025-12-03 03:05:30,144 | INFO     | event service: False
[2025-12-03 04:06:31] 2025-12-03 03:05:30,145 | INFO     | sizes: {0: 2283488, 1: 2284173, 2: 2284372, 13: 2284372, 23: 2284428, 34: 2284456, 45: 2284612, 56: 2284640, 66: 2284668, 77: 2284696, 88: 2284752, 97: 2285322, 99
[2025-12-03 04:06:31] 2025-12-03 03:05:30,145 | INFO     | --------------------------------------------------
[2025-12-03 04:06:31] 2025-12-03 03:05:30,145 | INFO     | 
[2025-12-03 04:06:31] 2025-12-03 03:05:30,145 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-12-03 04:06:31] 2025-12-03 03:05:30,493 | INFO     | time since job start (84217s) is within the limit (172800.0s)
[2025-12-03 04:06:31] 2025-12-03 03:05:30,680 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,681 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,681 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,681 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,681 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,681 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,681 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,681 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,681 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,681 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,681 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,682 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,682 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,682 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 04:06:31] 2025-12-03 03:05:30,682 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,682 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 04:06:31] 2025-12-03 03:05:30,682 | INFO     | job 6899792500 has completed (purged errors)
[2025-12-03 04:06:31] 2025-12-03 03:05:30,683 | INFO     | overall cleanup function is called
[2025-12-03 04:06:31] 2025-12-03 03:05:31,701 | INFO     | --- collectZombieJob: --- 10, [7857]
[2025-12-03 04:06:31] 2025-12-03 03:05:31,701 | INFO     | zombie collector waiting for pid 7857
[2025-12-03 04:06:31] 2025-12-03 03:05:31,701 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 04:06:31] 2025-12-03 03:05:31,701 | INFO     | collected zombie processes
[2025-12-03 04:06:31] 2025-12-03 03:05:31,701 | INFO     | will attempt to kill all subprocesses of pid=7857
[2025-12-03 04:06:31] 2025-12-03 03:05:31,805 | INFO     | process IDs to be killed: [7857] (in reverse order)
[2025-12-03 04:06:31] 2025-12-03 03:05:32,799 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 04:06:31] 2025-12-03 03:05:32,800 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 04:06:31] 2025-12-03 03:05:32,806 | INFO     | did not find any defunct processes belonging to 7857
[2025-12-03 04:06:31] 2025-12-03 03:05:32,808 | INFO     | did not find any defunct processes belonging to 7857
[2025-12-03 04:06:31] 2025-12-03 03:05:32,863 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 04:06:31] 2025-12-03 03:05:32,863 | INFO     | ready for new job
[2025-12-03 04:06:31] 2025-12-03 03:05:32,863 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 04:06:31] 2025-12-03 03:05:32,868 | INFO     | ***************************************
[2025-12-03 04:06:31] 2025-12-03 03:05:32,869 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 04:06:31] 2025-12-03 03:05:32,869 | INFO     | ***************************************
[2025-12-03 04:06:31] 2025-12-03 03:05:32,869 | INFO     | 
[2025-12-03 04:06:31] 2025-12-03 03:05:32,869 | INFO     | pilot is running in a VM
[2025-12-03 04:06:31] 2025-12-03 03:05:32,869 | INFO     | architecture information:
[2025-12-03 04:06:31] 2025-12-03 03:05:32,887 | INFO     | executing command: cat /etc/os-release
[2025-12-03 04:06:31] 2025-12-03 03:05:33,118 | INFO     | cat /etc/os-release:
[2025-12-03 04:06:31] NAME="CentOS Linux"
[2025-12-03 04:06:31] VERSION="7 (Core)"
[2025-12-03 04:06:31] ID="centos"
[2025-12-03 04:06:31] ID_LIKE="rhel fedora"
[2025-12-03 04:06:31] VERSION_ID="7"
[2025-12-03 04:06:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 04:06:31] ANSI_COLOR="0;31"
[2025-12-03 04:06:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 04:06:31] HOME_URL="https://www.centos.org/"
[2025-12-03 04:06:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 04:06:31] 
[2025-12-03 04:06:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 04:06:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 04:06:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 04:06:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 04:06:31] 
[2025-12-03 04:06:31] 2025-12-03 03:05:33,119 | INFO     | ***************************************
[2025-12-03 04:06:31] 2025-12-03 03:05:33,621 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-12-03 04:06:31] 2025-12-03 03:05:33,743 | INFO     | sufficient remaining disk space (494081671168 B)
[2025-12-03 04:06:31] 2025-12-03 03:05:33,744 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 04:06:31] 2025-12-03 03:05:33,744 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 04:06:31] 2025-12-03 03:05:33,744 | INFO     | update_server=False
[2025-12-03 04:06:31] 2025-12-03 03:05:33,744 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 04:06:31] 2025-12-03 03:05:33,745 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 04:06:31] 2025-12-03 03:05:33,829 | INFO     | all payload control threads have been joined
[2025-12-03 04:06:31] 2025-12-03 03:05:34,128 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 04:06:31] 2025-12-03 03:05:34,132 | INFO     | all job control threads have been joined
[2025-12-03 04:06:31] 2025-12-03 03:05:34,420 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:06:31] 2025-12-03 03:05:34,420 | INFO     | aborting loop
[2025-12-03 04:06:31] 2025-12-03 03:05:34,655 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:06:31] 2025-12-03 03:05:34,750 | INFO     | [job] retrieve thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:34,789 | INFO     | [payload] failed_post thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:34,835 | INFO     | [payload] control thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:34,843 | INFO     | all data control threads have been joined
[2025-12-03 04:06:31] 2025-12-03 03:05:34,939 | INFO     | [data] copytool_in thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:35,071 | INFO     | [payload] validate_post thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:35,137 | INFO     | [job] control thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:35,327 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:35,426 | INFO     | [job] job monitor thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:35,446 | INFO     | [job] validate thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:35,561 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:35,661 | INFO     | [job] queue monitor thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:35,752 | INFO     | [data] copytool_out thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:35,849 | INFO     | [data] control thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:36,079 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:38,137 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:05:44,598 | INFO     | job.realtimelogging is not enabled
[2025-12-03 04:06:31] 2025-12-03 03:05:45,604 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 04:06:31] 2025-12-03 03:06:02,559 | INFO     | 84223s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-03 04:06:31] 2025-12-03 03:06:03,728 | INFO     | PID=1261 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 04:06:31] 2025-12-03 03:06:03,729 | INFO     | .. there are 9 such processes running
[2025-12-03 04:06:31] 2025-12-03 03:06:03,730 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 04:06:31] 2025-12-03 03:06:03,730 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 04:06:31] 2025-12-03 03:06:03,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 04:06:31] 2025-12-03 03:06:20,968 | INFO     | [monitor] cgroup control has ended
[2025-12-03 04:06:31] 2025-12-03 03:06:23,019 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140246340036416)>', '<ExcThread(monitor, started 140245899138816)>']
[2025-12-03 04:06:31] 2025-12-03 03:06:23,849 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 04:06:31] 2025-12-03 03:06:23,849 | INFO     | [monitor] control thread has ended
[2025-12-03 04:06:31] 2025-12-03 03:06:28,045 | INFO     | all workflow threads have been joined
[2025-12-03 04:06:31] 2025-12-03 03:06:28,045 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 04:06:31] 2025-12-03 03:06:28,045 | INFO     | traces error code: 0
[2025-12-03 04:06:31] 2025-12-03 03:06:28,045 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 04:06:31] 2025-12-03 03:06:28,293 [wrapper] ==== pilot stdout END ====
[2025-12-03 04:06:31] 2025-12-03 03:06:28,385 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 04:06:31] 2025-12-03 03:06:28,478 [wrapper] pilotpid: 1261
[2025-12-03 04:06:31] 2025-12-03 03:06:28,556 [wrapper] Pilot exit status: 0
[2025-12-03 04:06:31] 2025-12-03 03:06:28,833 [wrapper] pandaids: 6899792500
[2025-12-03 04:06:31] 2025-12-03 03:06:29,513 [wrapper] cleanup supervisor_pilot 32147 1262
[2025-12-03 04:06:31] 2025-12-03 03:06:29,516 [wrapper] Test setup, not cleaning
[2025-12-03 04:06:31] 2025-12-03 03:06:29,523 [wrapper] apfmon messages muted
[2025-12-03 04:06:31] 2025-12-03 03:06:29,530 [wrapper] ==== wrapper stdout END ====
[2025-12-03 04:06:31] 2025-12-03 03:06:29,533 [wrapper] ==== wrapper stderr END ====
[2025-12-03 04:06:31]  *** Error codes and diagnostics ***
[2025-12-03 04:06:31]     "exeErrorCode": 0,
[2025-12-03 04:06:31]     "exeErrorDiag": "",
[2025-12-03 04:06:31]     "pilotErrorCode": 0,
[2025-12-03 04:06:31]     "pilotErrorDiag": "",
[2025-12-03 04:06:31]  *** Listing of results directory ***
[2025-12-03 04:06:31] total 1323960
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-03 04:06:31] -rwx------. 1 boinc boinc     36292 Nov 27 09:49 runpilot2-wrapper.sh
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc      5112 Nov 27 09:52 queuedata.json
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc       100 Dec  2 04:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 04:06:31] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 04:38 run_atlas
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc       105 Dec  2 04:38 job.xml
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc      6390 Dec  2 04:38 init_data.xml
[2025-12-03 04:06:31] -rw-r--r--. 2 boinc boinc 409754483 Dec  2 04:38 EVNT.47483658._002806.pool.root.1
[2025-12-03 04:06:31] -rw-r--r--. 2 boinc boinc     15847 Dec  2 04:38 start_atlas.sh
[2025-12-03 04:06:31] drwxrwx--x. 2 boinc boinc        68 Dec  2 04:38 shared
[2025-12-03 04:06:31] -rw-r--r--. 2 boinc boinc    590111 Dec  2 04:38 input.tar.gz
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc         0 Dec  2 04:38 boinc_lockfile
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc      2787 Dec  2 04:38 pandaJob.out
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc    992000 Dec  2 04:41 agis_schedconf.cvmfs.json
[2025-12-03 04:06:31] drwx------. 5 boinc boinc      4096 Dec  2 04:41 pilot3
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc       533 Dec  3 03:43 boinc_task_state.xml
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc 914810592 Dec  3 04:02 HITS.47556161._007885.pool.root.1
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc      1034 Dec  3 04:03 memory_monitor_summary.json
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc   1516240 Dec  3 04:03 agis_ddmendpoints.agis.ALL.json
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc   2445770 Dec  3 04:03 log.47556161._007885.job.log.tgz.1
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc      8628 Dec  3 04:05 heartbeat.json
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc        95 Dec  3 04:06 pilot_heartbeat.json
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc      8192 Dec  3 04:06 boinc_mmap_file
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc        29 Dec  3 04:06 wrapper_checkpoint.txt
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc      5071 Dec  3 04:06 pilotlog.txt
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc  11184287 Dec  3 04:06 log.47556161._007885.job.log.1
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc       353 Dec  3 04:06 output.list
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc       620 Dec  3 04:06 runtime_log
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc  13649920 Dec  3 04:06 result.tar.gz
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc      8817 Dec  3 04:06 runtime_log.err
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc       662 Dec  3 04:06 HILNDmzrmi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1qNKDmJJNgNn.diag
[2025-12-03 04:06:31] -rw-r--r--. 1 boinc boinc     21488 Dec  3 04:06 stderr.txt
[2025-12-03 04:06:31] HITS file was successfully produced:
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc 914810592 Dec  3 04:02 shared/HITS.pool.root.1
[2025-12-03 04:06:31]  *** Contents of shared directory: ***
[2025-12-03 04:06:31] total 1307452
[2025-12-03 04:06:31] -rw-r--r--. 2 boinc boinc 409754483 Dec  2 04:38 ATLAS.root_0
[2025-12-03 04:06:31] -rw-r--r--. 2 boinc boinc     15847 Dec  2 04:38 start_atlas.sh
[2025-12-03 04:06:31] -rw-r--r--. 2 boinc boinc    590111 Dec  2 04:38 input.tar.gz
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc 914810592 Dec  3 04:02 HITS.pool.root.1
[2025-12-03 04:06:31] -rw-------. 1 boinc boinc  13649920 Dec  3 04:06 result.tar.gz
04:06:32 (29846): run_atlas exited; CPU time 315611.083095
04:06:32 (29846): called boinc_finish(0)

</stderr_txt>
]]>

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