Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:54:19 (1675515): wrapper (7.7.26015): starting
23:54:19 (1675515): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 23:54:19] Arguments: --nthreads 8
[2025-11-29 23:54:19] Threads: 8
[2025-11-29 23:54:19] Checking for CVMFS
[2025-11-29 23:54:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 23:54:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 23:54:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 23:54:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 23:54:20] 2.13.3.0 11888 35309 365740 153468 2 293 19740708 32935937 25306 16776704 0 185004951 99.526 225034417 35196 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 23:54:20] CVMFS is ok
[2025-11-29 23:54:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 23:54:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 23:54:20] Further information can be found at the LHC@home message board.
[2025-11-29 23:54:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 23:54:20] Checking for apptainer binary...
[2025-11-29 23:54:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 23:54:20] Running /usr/bin/apptainer --version
[2025-11-29 23:54:20] apptainer version 1.4.4-1.el9
[2025-11-29 23:54:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 23:54:21] c6-2-11-3.aglt2.org
[2025-11-29 23:54:21] apptainer works
[2025-11-29 23:54:21] Set ATHENA_PROC_NUMBER=8
[2025-11-29 23:54:21] Set ATHENA_CORE_NUMBER=8
[2025-11-29 23:54:21] Starting ATLAS job with PandaID=6900368781
[2025-11-29 23:54:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:40:08 (1675515): BOINC client no longer exists - exiting
04:40:08 (1675515): timer handler: client dead, exiting
04:46:36 (3854076): wrapper (7.7.26015): starting
04:46:36 (3854076): wrapper: running run_atlas (--nthreads 9)
[2025-12-01 04:46:36] Arguments: --nthreads 9
[2025-12-01 04:46:36] Threads: 9
[2025-12-01 04:46:36] This job has been restarted, cleaning up previous attempt
[2025-12-01 04:46:37] Checking for CVMFS
[2025-12-01 04:46:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 04:46:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 04:46:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 04:46:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 04:46:38] 2.13.3.0 11888 37042 382644 153512 0 324 22618920 32935936 25702 16776704 0 193513543 99.519 240140231 35395 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-01 04:46:38] CVMFS is ok
[2025-12-01 04:46:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 04:46:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 04:46:38] Further information can be found at the LHC@home message board.
[2025-12-01 04:46:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 04:46:38] Checking for apptainer binary...
[2025-12-01 04:46:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 04:46:38] Running /usr/bin/apptainer --version
[2025-12-01 04:46:38] apptainer version 1.4.4-1.el9
[2025-12-01 04:46:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 04:46:38] c6-2-11-3.aglt2.org
[2025-12-01 04:46:38] apptainer works
[2025-12-01 04:46:38] Set ATHENA_PROC_NUMBER=9
[2025-12-01 04:46:38] Set ATHENA_CORE_NUMBER=9
[2025-12-01 04:46:38] Starting ATLAS job with PandaID=6900368781
[2025-12-01 04:46:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 04:02:00]  *** The last 200 lines of the pilot log: ***
[2025-12-02 04:02:00] 2025-12-02 09:01:15,112 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:02:00] 2025-12-02 09:01:16,203 | INFO     | time since job start (83637s) is within the limit (172800.0s)
[2025-12-02 04:02:00] 2025-12-02 09:01:17,624 | INFO     | monitor loop #4360: job 0:6900368781 is in state 'finished'
[2025-12-02 04:02:00] 2025-12-02 09:01:17,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:02:00] 2025-12-02 09:01:18,602 | INFO     | PID=3869561 has CPU usage=14.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-02 04:02:00] 2025-12-02 09:01:18,602 | INFO     | .. there are 66 such processes running
[2025-12-02 04:02:00] 2025-12-02 09:01:19,603 | INFO     | time since job start (83640s) is within the limit (172800.0s)
[2025-12-02 04:02:00] 2025-12-02 09:01:20,140 | INFO     | monitor loop #4361: job 0:6900368781 is in state 'finished'
[2025-12-02 04:02:00] 2025-12-02 09:01:20,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:02:00] 2025-12-02 09:01:21,610 | INFO     | time since job start (83642s) is within the limit (172800.0s)
[2025-12-02 04:02:00] 2025-12-02 09:01:22,644 | INFO     | monitor loop #4362: job 0:6900368781 is in state 'finished'
[2025-12-02 04:02:00] 2025-12-02 09:01:22,644 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:02:00] 2025-12-02 09:01:23,625 | INFO     | time since job start (83644s) is within the limit (172800.0s)
[2025-12-02 04:02:00] 2025-12-02 09:01:25,149 | INFO     | monitor loop #4363: job 0:6900368781 is in state 'finished'
[2025-12-02 04:02:00] 2025-12-02 09:01:25,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:02:00] 2025-12-02 09:01:25,635 | INFO     | time since job start (83646s) is within the limit (172800.0s)
[2025-12-02 04:02:00] 2025-12-02 09:01:26,722 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 04:02:00] 2025-12-02 09:01:26,737 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2703.193520833332
[2025-12-02 04:02:00] 2025-12-02 09:01:26,754 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6900368781/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 04:02:00] 2025-12-02 09:01:26,755 | INFO     | extracted standard info from prmon json
[2025-12-02 04:02:00] 2025-12-02 09:01:26,755 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 04:02:00] 2025-12-02 09:01:26,755 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 04:02:00] 2025-12-02 09:01:26,778 | INFO     | fitting pss+swap vs Time
[2025-12-02 04:02:00] 2025-12-02 09:01:26,779 | INFO     | sum of square deviations: 797409449554.9985
[2025-12-02 04:02:00] 2025-12-02 09:01:26,903 | INFO     | sum of deviations: 2050816510529.6306
[2025-12-02 04:02:00] 2025-12-02 09:01:26,904 | INFO     | mean x: 1764624290.40073
[2025-12-02 04:02:00] 2025-12-02 09:01:26,904 | INFO     | mean y: 2987041.9605839415
[2025-12-02 04:02:00] 2025-12-02 09:01:26,904 | INFO     | intersect: -4535359765.510812
[2025-12-02 04:02:00] 2025-12-02 09:01:26,906 | INFO     | chi2: 25.24597729578694
[2025-12-02 04:02:00] 2025-12-02 09:01:26,933 | INFO     | sum of square deviations: 788713389931.9736
[2025-12-02 04:02:00] 2025-12-02 09:01:27,080 | INFO     | sum of deviations: 2586597264582.424
[2025-12-02 04:02:00] 2025-12-02 09:01:27,081 | INFO     | mean x: 1764624137.9186814
[2025-12-02 04:02:00] 2025-12-02 09:01:27,081 | INFO     | mean y: 2996434.7245421247
[2025-12-02 04:02:00] 2025-12-02 09:01:27,081 | INFO     | intersect: -5784114607.665972
[2025-12-02 04:02:00] 2025-12-02 09:01:27,083 | INFO     | chi2: 21.079141887404695
[2025-12-02 04:02:00] 2025-12-02 09:01:27,083 | INFO     | current chi2=21.079141887404695 (change=16.50494793512156 %)
[2025-12-02 04:02:00] 2025-12-02 09:01:27,083 | INFO     | right removable region: 1364
[2025-12-02 04:02:00] 2025-12-02 09:01:27,084 | INFO     | sum of square deviations: 788709294391.9718
[2025-12-02 04:02:00] 2025-12-02 09:01:27,212 | INFO     | sum of deviations: 1502715047336.0645
[2025-12-02 04:02:00] 2025-12-02 09:01:27,212 | INFO     | mean x: 1764624442.9186814
[2025-12-02 04:02:00] 2025-12-02 09:01:27,212 | INFO     | mean y: 2996648.9465201464
[2025-12-02 04:02:00] 2025-12-02 09:01:27,213 | INFO     | intersect: -3359113728.255489
[2025-12-02 04:02:00] 2025-12-02 09:01:27,214 | INFO     | chi2: 21.52552538635805
[2025-12-02 04:02:00] 2025-12-02 09:01:27,214 | INFO     | current chi2=21.52552538635805 (change=14.736810802922488 %)
[2025-12-02 04:02:00] 2025-12-02 09:01:27,215 | INFO     | left removable region: 10
[2025-12-02 04:02:00] 2025-12-02 09:01:27,220 | INFO     | sum of square deviations: 769797106154.0997
[2025-12-02 04:02:00] 2025-12-02 09:01:27,348 | INFO     | sum of deviations: 1797232354063.583
[2025-12-02 04:02:00] 2025-12-02 09:01:27,349 | INFO     | mean x: 1764624412.4579024
[2025-12-02 04:02:00] 2025-12-02 09:01:27,349 | INFO     | mean y: 3013674.79098966
[2025-12-02 04:02:00] 2025-12-02 09:01:27,349 | INFO     | intersect: -4116825256.1245503
[2025-12-02 04:02:00] 2025-12-02 09:01:27,351 | INFO     | chi2: 15.298948323805478
[2025-12-02 04:02:00] 2025-12-02 09:01:27,351 | INFO     | current memory leak: 2.33 B/s (using 1354 data points, chi2=15.30)
[2025-12-02 04:02:00] 2025-12-02 09:01:27,352 | INFO     | could have reported an average CPU frequency of 2681 MHz (49 samples)
[2025-12-02 04:02:00] 2025-12-02 09:01:27,352 | INFO     | ..............................
[2025-12-02 04:02:00] 2025-12-02 09:01:27,352 | INFO     | . Timing measurements:
[2025-12-02 04:02:00] 2025-12-02 09:01:27,352 | INFO     | . get job = 0 s
[2025-12-02 04:02:00] 2025-12-02 09:01:27,353 | INFO     | . initial setup = 3 s
[2025-12-02 04:02:00] 2025-12-02 09:01:27,353 | INFO     | . payload setup = 25 s
[2025-12-02 04:02:00] 2025-12-02 09:01:27,353 | INFO     | . stage-in = 0 s
[2025-12-02 04:02:00] 2025-12-02 09:01:27,353 | INFO     | . payload execution = 83550 s
[2025-12-02 04:02:00] 2025-12-02 09:01:27,353 | INFO     | . stage-out = 6 s
[2025-12-02 04:02:00] 2025-12-02 09:01:27,353 | INFO     | . log creation = 1 s
[2025-12-02 04:02:00] 2025-12-02 09:01:27,353 | INFO     | ..............................
[2025-12-02 04:02:00] 2025-12-02 09:01:27,485 | INFO     | 
[2025-12-02 04:02:00] 2025-12-02 09:01:27,485 | INFO     | job summary report
[2025-12-02 04:02:00] 2025-12-02 09:01:27,485 | INFO     | --------------------------------------------------
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | PanDA job id: 6900368781
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | task id: 47556173
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | errors: (none)
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | pilot state: finished 
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | transexitcode: 0
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | exeerrorcode: 0
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | exeerrordiag: 
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | exitcode: 0
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | exitmsg: OK
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | cpuconsumptiontime: 249815 s
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | nevents: 1000
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | neventsw: 0
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | pid: 3896531
[2025-12-02 04:02:00] 2025-12-02 09:01:27,486 | INFO     | pgrp: 3896531
[2025-12-02 04:02:00] 2025-12-02 09:01:27,487 | INFO     | corecount: 9
[2025-12-02 04:02:00] 2025-12-02 09:01:27,487 | INFO     | event service: False
[2025-12-02 04:02:00] 2025-12-02 09:01:27,487 | INFO     | sizes: {0: 2284146, 1: 2284345, 2: 2284373, 13: 2284373, 18: 2284691, 23: 2284719, 83576: 2347703, 83577: 2347702, 83584: 2356752, 83587: 2356808, 83606: 2357054}
[2025-12-02 04:02:00] 2025-12-02 09:01:27,487 | INFO     | --------------------------------------------------
[2025-12-02 04:02:00] 2025-12-02 09:01:27,487 | INFO     | 
[2025-12-02 04:02:00] 2025-12-02 09:01:27,487 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-12-02 04:02:00] 2025-12-02 09:01:27,547 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,548 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,548 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,548 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,549 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,549 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,549 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,549 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,549 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,550 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,550 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,550 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,550 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,550 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,550 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,550 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,550 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,554 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 04:02:00] 2025-12-02 09:01:27,554 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,554 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 04:02:00] 2025-12-02 09:01:27,554 | INFO     | job 6900368781 has completed (purged errors)
[2025-12-02 04:02:00] 2025-12-02 09:01:27,554 | INFO     | overall cleanup function is called
[2025-12-02 04:02:00] 2025-12-02 09:01:28,591 | INFO     | --- collectZombieJob: --- 10, [3896531]
[2025-12-02 04:02:00] 2025-12-02 09:01:28,591 | INFO     | zombie collector waiting for pid 3896531
[2025-12-02 04:02:00] 2025-12-02 09:01:28,592 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 04:02:00] 2025-12-02 09:01:28,592 | INFO     | collected zombie processes
[2025-12-02 04:02:00] 2025-12-02 09:01:28,592 | INFO     | will attempt to kill all subprocesses of pid=3896531
[2025-12-02 04:02:00] 2025-12-02 09:01:29,423 | INFO     | process IDs to be killed: [3896531] (in reverse order)
[2025-12-02 04:02:00] 2025-12-02 09:01:30,045 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 04:02:00] 2025-12-02 09:01:30,045 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 04:02:00] 2025-12-02 09:01:30,118 | INFO     | did not find any defunct processes belonging to 3896531
[2025-12-02 04:02:00] 2025-12-02 09:01:30,151 | INFO     | did not find any defunct processes belonging to 3896531
[2025-12-02 04:02:00] 2025-12-02 09:01:30,155 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 04:02:00] 2025-12-02 09:01:30,155 | INFO     | ready for new job
[2025-12-02 04:02:00] 2025-12-02 09:01:30,155 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 04:02:00] 2025-12-02 09:01:30,160 | INFO     | ***************************************
[2025-12-02 04:02:00] 2025-12-02 09:01:30,160 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 04:02:00] 2025-12-02 09:01:30,160 | INFO     | ***************************************
[2025-12-02 04:02:00] 2025-12-02 09:01:30,160 | INFO     | 
[2025-12-02 04:02:00] 2025-12-02 09:01:30,165 | INFO     | architecture information:
[2025-12-02 04:02:00] 2025-12-02 09:01:30,166 | INFO     | executing command: cat /etc/os-release
[2025-12-02 04:02:00] 2025-12-02 09:01:30,205 | INFO     | cat /etc/os-release:
[2025-12-02 04:02:00] NAME="CentOS Linux"
[2025-12-02 04:02:00] VERSION="7 (Core)"
[2025-12-02 04:02:00] ID="centos"
[2025-12-02 04:02:00] ID_LIKE="rhel fedora"
[2025-12-02 04:02:00] VERSION_ID="7"
[2025-12-02 04:02:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 04:02:00] ANSI_COLOR="0;31"
[2025-12-02 04:02:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 04:02:00] HOME_URL="https://www.centos.org/"
[2025-12-02 04:02:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 04:02:00] 
[2025-12-02 04:02:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 04:02:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 04:02:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 04:02:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 04:02:00] 
[2025-12-02 04:02:00] 2025-12-02 09:01:30,206 | INFO     | ***************************************
[2025-12-02 04:02:00] 2025-12-02 09:01:30,709 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-12-02 04:02:00] 2025-12-02 09:01:30,764 | INFO     | sufficient remaining disk space (67009249280 B)
[2025-12-02 04:02:00] 2025-12-02 09:01:30,764 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 04:02:00] 2025-12-02 09:01:30,764 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 04:02:00] 2025-12-02 09:01:30,764 | INFO     | update_server=False
[2025-12-02 04:02:00] 2025-12-02 09:01:30,764 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 04:02:00] 2025-12-02 09:01:31,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 04:02:00] 2025-12-02 09:01:31,208 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:02:00] 2025-12-02 09:01:31,209 | INFO     | aborting loop
[2025-12-02 04:02:00] 2025-12-02 09:01:31,595 | INFO     | all data control threads have been joined
[2025-12-02 04:02:00] 2025-12-02 09:01:31,639 | INFO     | all job control threads have been joined
[2025-12-02 04:02:00] 2025-12-02 09:01:31,770 | INFO     | [job] retrieve thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:31,846 | INFO     | [payload] failed_post thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:31,938 | INFO     | all payload control threads have been joined
[2025-12-02 04:02:00] 2025-12-02 09:01:31,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 04:02:00] 2025-12-02 09:01:32,078 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:32,184 | INFO     | [job] validate thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:32,216 | INFO     | [job] job monitor thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:32,245 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:32,502 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:02:00] 2025-12-02 09:01:32,601 | INFO     | [data] control thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:32,645 | INFO     | [job] control thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:32,805 | INFO     | [data] copytool_in thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:32,904 | INFO     | [payload] validate_post thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:32,944 | INFO     | [payload] control thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:33,082 | INFO     | [data] copytool_out thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:33,187 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:33,508 | INFO     | [job] queue monitor thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:35,988 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:41,537 | INFO     | job.realtimelogging is not enabled
[2025-12-02 04:02:00] 2025-12-02 09:01:42,543 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 04:02:00] 2025-12-02 09:01:52,521 | INFO     | [monitor] cgroup control has ended
[2025-12-02 04:02:00] 2025-12-02 09:01:52,664 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140376443258688)>', '<ExcThread(monitor, started 140375939331840)>']
[2025-12-02 04:02:00] 2025-12-02 09:01:57,690 | INFO     | all workflow threads have been joined
[2025-12-02 04:02:00] 2025-12-02 09:01:57,690 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 04:02:00] 2025-12-02 09:01:57,691 | INFO     | traces error code: 0
[2025-12-02 04:02:00] 2025-12-02 09:01:57,691 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 04:02:00] 2025-12-02 09:02:00,020 | INFO     | PID=3869561 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 04:02:00] 2025-12-02 09:02:00,020 | INFO     | .. there are 66 such processes running
[2025-12-02 04:02:00] 2025-12-02 09:02:00,021 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 04:02:00] 2025-12-02 09:02:00,021 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 04:02:00] 2025-12-02 09:02:00,021 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 04:02:00] 2025-12-02 09:02:00,021 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 04:02:00] 2025-12-02 09:02:00,021 | INFO     | [monitor] control thread has ended
[2025-12-02 04:02:00] 2025-12-02 09:02:00,249 [wrapper] ==== pilot stdout END ====
[2025-12-02 04:02:00] 2025-12-02 09:02:00,252 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 04:02:00] 2025-12-02 09:02:00,254 [wrapper] pilotpid: 3869561
[2025-12-02 04:02:00] 2025-12-02 09:02:00,256 [wrapper] Pilot exit status: 0
[2025-12-02 04:02:00] 2025-12-02 09:02:00,280 [wrapper] pandaids: 6900368781 6900368781
[2025-12-02 04:02:00] 2025-12-02 09:02:00,425 [wrapper] cleanup supervisor_pilot 1046807 3869562
[2025-12-02 04:02:00] 2025-12-02 09:02:00,428 [wrapper] Test setup, not cleaning
[2025-12-02 04:02:00] 2025-12-02 09:02:00,456 [wrapper] apfmon messages muted
[2025-12-02 04:02:00] 2025-12-02 09:02:00,475 [wrapper] ==== wrapper stdout END ====
[2025-12-02 04:02:00] 2025-12-02 09:02:00,477 [wrapper] ==== wrapper stderr END ====
[2025-12-02 04:02:00]  *** Error codes and diagnostics ***
[2025-12-02 04:02:00]     "exeErrorCode": 0,
[2025-12-02 04:02:00]     "exeErrorDiag": "",
[2025-12-02 04:02:00]     "pilotErrorCode": 0,
[2025-12-02 04:02:00]     "pilotErrorDiag": "",
[2025-12-02 04:02:00]  *** Listing of results directory ***
[2025-12-02 04:02:00] total 1723676
[2025-12-02 04:02:00] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 27 19:58 pilot3.tar.gz
[2025-12-02 04:02:00] -rwx------. 1 boincer umatlas     36292 Nov 27 20:02 runpilot2-wrapper.sh
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 27 20:05 queuedata.json
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas       100 Nov 29 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 04:02:00] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 23:54 run_atlas
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas       105 Nov 29 23:54 job.xml
[2025-12-02 04:02:00] -rw-r--r--. 3 boincer umatlas 410253355 Nov 29 23:54 EVNT.47483658._003451.pool.root.1
[2025-12-02 04:02:00] -rw-r--r--. 3 boincer umatlas 410253355 Nov 29 23:54 ATLAS.root_0
[2025-12-02 04:02:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 23:54 start_atlas.sh
[2025-12-02 04:02:00] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 23:54 shared
[2025-12-02 04:02:00] -rw-r--r--. 2 boincer umatlas    590113 Nov 29 23:54 input.tar.gz
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas         0 Nov 29 23:54 boinc_lockfile
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas      2788 Dec  1 04:46 pandaJob.out
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas        57 Dec  1 04:46 setup.sh.local
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas    992532 Dec  1 04:47 agis_schedconf.cvmfs.json
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas       534 Dec  2 03:24 boinc_task_state.xml
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas      6880 Dec  2 03:54 init_data.xml
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas 916283237 Dec  2 03:58 HITS.47556173._004080.pool.root.1
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas      1069 Dec  2 04:00 memory_monitor_summary.json
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas   1516240 Dec  2 04:01 agis_ddmendpoints.agis.ALL.json
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas   2463737 Dec  2 04:01 log.47556173._004080.job.log.tgz.1
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas        96 Dec  2 04:01 pilot_heartbeat.json
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas      8659 Dec  2 04:01 heartbeat.json
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 04:01 boinc_mmap_file
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas        30 Dec  2 04:01 wrapper_checkpoint.txt
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas       823 Dec  2 04:02 pilotlog.txt
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas   9701477 Dec  2 04:02 log.47556173._004080.job.log.1
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas       353 Dec  2 04:02 output.list
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas       620 Dec  2 04:02 runtime_log
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas  12185600 Dec  2 04:02 result.tar.gz
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas      9433 Dec  2 04:02 runtime_log.err
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas       790 Dec  2 04:02 KvpNDmO31i8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIKOKDmE13xRm.diag
[2025-12-02 04:02:00] -rw-r--r--. 1 boincer umatlas     24154 Dec  2 04:02 stderr.txt
[2025-12-02 04:02:00] HITS file was successfully produced:
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas 916283237 Dec  2 03:58 shared/HITS.pool.root.1
[2025-12-02 04:02:00]  *** Contents of shared directory: ***
[2025-12-02 04:02:00] total 1307952
[2025-12-02 04:02:00] -rw-r--r--. 3 boincer umatlas 410253355 Nov 29 23:54 ATLAS.root_0
[2025-12-02 04:02:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 23:54 start_atlas.sh
[2025-12-02 04:02:00] -rw-r--r--. 2 boincer umatlas    590113 Nov 29 23:54 input.tar.gz
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas 916283237 Dec  2 03:58 HITS.pool.root.1
[2025-12-02 04:02:00] -rw-------. 1 boincer umatlas  12185600 Dec  2 04:02 result.tar.gz
04:02:02 (3854076): run_atlas exited; CPU time 253131.297979
04:02:02 (3854076): called boinc_finish(0)

</stderr_txt>
]]>

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