Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:00:56 (234863): wrapper (7.7.26015): starting
23:00:56 (234863): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 23:00:56] Arguments: --nthreads 8
[2025-11-29 23:00:56] Threads: 8
[2025-11-29 23:00:56] Checking for CVMFS
[2025-11-29 23:00:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 23:00:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 23:00:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 23:00:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 23:00:58] 2.13.3.0 7100 35239 300708 153466 0 491 38415058 40960001 43228 16776704 0 477508950 99.705 334843084 48214 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 23:00:58] CVMFS is ok
[2025-11-29 23:00:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 23:00:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 23:00:58] Further information can be found at the LHC@home message board.
[2025-11-29 23:00:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 23:00:58] Checking for apptainer binary...
[2025-11-29 23:00:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 23:00:58] Running /usr/bin/apptainer --version
[2025-11-29 23:00:58] apptainer version 1.4.4-1.el9
[2025-11-29 23:00:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 23:00:59] c8-6-10.aglt2.org
[2025-11-29 23:00:59] apptainer works
[2025-11-29 23:00:59] Set ATHENA_PROC_NUMBER=8
[2025-11-29 23:00:59] Set ATHENA_CORE_NUMBER=8
[2025-11-29 23:00:59] Starting ATLAS job with PandaID=6893850238
[2025-11-29 23:00:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 13:11:03]  *** The last 200 lines of the pilot log: ***
[2025-11-30 13:11:03] 2025-11-30 18:09:48,716 | INFO     | monitor loop #2869: job 0:6893850238 is in state 'finished'
[2025-11-30 13:11:03] 2025-11-30 18:09:48,716 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 13:11:03] 2025-11-30 18:09:50,506 | INFO     | PID=247754 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-30 13:11:03] 2025-11-30 18:09:50,507 | INFO     | .. there are 72 such processes running
[2025-11-30 13:11:03] 2025-11-30 18:09:51,221 | INFO     | monitor loop #2870: job 0:6893850238 is in state 'finished'
[2025-11-30 13:11:03] 2025-11-30 18:09:51,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 13:11:03] 2025-11-30 18:09:51,508 | INFO     | time since job start (50847s) is within the limit (172800.0s)
[2025-11-30 13:11:03] 2025-11-30 18:09:53,515 | INFO     | time since job start (50849s) is within the limit (172800.0s)
[2025-11-30 13:11:03] 2025-11-30 18:09:53,726 | INFO     | monitor loop #2871: job 0:6893850238 is in state 'finished'
[2025-11-30 13:11:03] 2025-11-30 18:09:53,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 13:11:03] 2025-11-30 18:09:55,525 | INFO     | time since job start (50851s) is within the limit (172800.0s)
[2025-11-30 13:11:03] 2025-11-30 18:09:56,231 | INFO     | monitor loop #2872: job 0:6893850238 is in state 'finished'
[2025-11-30 13:11:03] 2025-11-30 18:09:56,231 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 13:11:03] 2025-11-30 18:09:57,549 | INFO     | time since job start (50853s) is within the limit (172800.0s)
[2025-11-30 13:11:03] 2025-11-30 18:09:58,736 | INFO     | monitor loop #2873: job 0:6893850238 is in state 'finished'
[2025-11-30 13:11:03] 2025-11-30 18:09:58,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 13:11:03] 2025-11-30 18:09:59,555 | INFO     | time since job start (50855s) is within the limit (172800.0s)
[2025-11-30 13:11:03] 2025-11-30 18:09:59,662 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-30 13:11:03] 2025-11-30 18:09:59,677 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9912187499995
[2025-11-30 13:11:03] 2025-11-30 18:09:59,706 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6893850238/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 13:11:03] 2025-11-30 18:09:59,706 | INFO     | extracted standard info from prmon json
[2025-11-30 13:11:03] 2025-11-30 18:09:59,706 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 13:11:03] 2025-11-30 18:09:59,706 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 13:11:03] 2025-11-30 18:09:59,748 | INFO     | fitting pss+swap vs Time
[2025-11-30 13:11:03] 2025-11-30 18:09:59,748 | INFO     | sum of square deviations: 177943288966.5872
[2025-11-30 13:11:03] 2025-11-30 18:09:59,788 | INFO     | sum of deviations: 192042157753.0842
[2025-11-30 13:11:03] 2025-11-30 18:09:59,788 | INFO     | mean x: 1764500816.5788207
[2025-11-30 13:11:03] 2025-11-30 18:09:59,788 | INFO     | mean y: 2782011.3116726833
[2025-11-30 13:11:03] 2025-11-30 18:09:59,788 | INFO     | intersect: -1901524389.5692506
[2025-11-30 13:11:03] 2025-11-30 18:09:59,788 | INFO     | chi2: 30.405379264727475
[2025-11-30 13:11:03] 2025-11-30 18:09:59,789 | INFO     | sum of square deviations: 174751005996.54858
[2025-11-30 13:11:03] 2025-11-30 18:09:59,828 | INFO     | sum of deviations: 474887358443.58093
[2025-11-30 13:11:03] 2025-11-30 18:09:59,828 | INFO     | mean x: 1764500664.0883777
[2025-11-30 13:11:03] 2025-11-30 18:09:59,828 | INFO     | mean y: 2795517.0605326877
[2025-11-30 13:11:03] 2025-11-30 18:09:59,828 | INFO     | intersect: -4792250179.886264
[2025-11-30 13:11:03] 2025-11-30 18:09:59,829 | INFO     | chi2: 26.639650144505907
[2025-11-30 13:11:03] 2025-11-30 18:09:59,829 | INFO     | current chi2=26.639650144505907 (change=12.38507530998009 %)
[2025-11-30 13:11:03] 2025-11-30 18:09:59,829 | INFO     | right removable region: 825
[2025-11-30 13:11:03] 2025-11-30 18:09:59,829 | INFO     | sum of square deviations: 174750205676.54865
[2025-11-30 13:11:03] 2025-11-30 18:09:59,875 | INFO     | sum of deviations: -140105734641.99976
[2025-11-30 13:11:03] 2025-11-30 18:09:59,886 | INFO     | mean x: 1764500969.0883777
[2025-11-30 13:11:03] 2025-11-30 18:09:59,886 | INFO     | mean y: 2797873.0
[2025-11-30 13:11:03] 2025-11-30 18:09:59,886 | INFO     | intersect: 1417484073.7603576
[2025-11-30 13:11:03] 2025-11-30 18:09:59,886 | INFO     | chi2: 25.95825589944927
[2025-11-30 13:11:03] 2025-11-30 18:09:59,887 | INFO     | current chi2=25.95825589944927 (change=14.626107198199637 %)
[2025-11-30 13:11:03] 2025-11-30 18:09:59,887 | INFO     | left removable region: 10
[2025-11-30 13:11:03] 2025-11-30 18:09:59,887 | INFO     | sum of square deviations: 167861291397.92172
[2025-11-30 13:11:03] 2025-11-30 18:09:59,926 | INFO     | sum of deviations: -89256696010.93533
[2025-11-30 13:11:03] 2025-11-30 18:09:59,926 | INFO     | mean x: 1764500938.6098158
[2025-11-30 13:11:03] 2025-11-30 18:09:59,926 | INFO     | mean y: 2827871.6920245397
[2025-11-30 13:11:03] 2025-11-30 18:09:59,926 | INFO     | intersect: 941063974.7085437
[2025-11-30 13:11:03] 2025-11-30 18:09:59,927 | INFO     | chi2: 18.38054874977642
[2025-11-30 13:11:03] 2025-11-30 18:09:59,927 | INFO     | current memory leak: -0.53 B/s (using 815 data points, chi2=18.38)
[2025-11-30 13:11:03] 2025-11-30 18:09:59,927 | INFO     | could have reported an average CPU frequency of 3793 MHz (31 samples)
[2025-11-30 13:11:03] 2025-11-30 18:09:59,928 | INFO     | ..............................
[2025-11-30 13:11:03] 2025-11-30 18:09:59,928 | INFO     | . Timing measurements:
[2025-11-30 13:11:03] 2025-11-30 18:09:59,928 | INFO     | . get job = 0 s
[2025-11-30 13:11:03] 2025-11-30 18:09:59,928 | INFO     | . initial setup = 7 s
[2025-11-30 13:11:03] 2025-11-30 18:09:59,928 | INFO     | . payload setup = 55 s
[2025-11-30 13:11:03] 2025-11-30 18:09:59,928 | INFO     | . stage-in = 0 s
[2025-11-30 13:11:03] 2025-11-30 18:09:59,928 | INFO     | . payload execution = 50680 s
[2025-11-30 13:11:03] 2025-11-30 18:09:59,928 | INFO     | . stage-out = 11 s
[2025-11-30 13:11:03] 2025-11-30 18:09:59,928 | INFO     | . log creation = 3 s
[2025-11-30 13:11:03] 2025-11-30 18:09:59,928 | INFO     | ..............................
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | 
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | job summary report
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | --------------------------------------------------
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | PanDA job id: 6893850238
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | task id: 47523449
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | errors: (none)
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | pilot state: finished 
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | transexitcode: 0
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | exeerrorcode: 0
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | exeerrordiag: 
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | exitcode: 0
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | exitmsg: OK
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | cpuconsumptiontime: 141088 s
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | nevents: 1000
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | neventsw: 0
[2025-11-30 13:11:03] 2025-11-30 18:10:00,208 | INFO     | pid: 261880
[2025-11-30 13:11:03] 2025-11-30 18:10:00,209 | INFO     | pgrp: 261880
[2025-11-30 13:11:03] 2025-11-30 18:10:00,209 | INFO     | corecount: 8
[2025-11-30 13:11:03] 2025-11-30 18:10:00,209 | INFO     | event service: False
[2025-11-30 13:11:03] 2025-11-30 18:10:00,209 | INFO     | sizes: {0: 2284315, 1: 2284315, 12: 2284343, 23: 2284371, 33: 2284717, 50739: 2332802, 50751: 2341796, 50753: 2341852, 50789: 2342098}
[2025-11-30 13:11:03] 2025-11-30 18:10:00,209 | INFO     | --------------------------------------------------
[2025-11-30 13:11:03] 2025-11-30 18:10:00,209 | INFO     | 
[2025-11-30 13:11:03] 2025-11-30 18:10:00,209 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-30 13:11:03] 2025-11-30 18:10:00,279 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,279 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,279 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,279 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | job 6893850238 has completed (purged errors)
[2025-11-30 13:11:03] 2025-11-30 18:10:00,280 | INFO     | overall cleanup function is called
[2025-11-30 13:11:03] 2025-11-30 18:10:01,327 | INFO     | --- collectZombieJob: --- 10, [261880]
[2025-11-30 13:11:03] 2025-11-30 18:10:01,329 | INFO     | zombie collector waiting for pid 261880
[2025-11-30 13:11:03] 2025-11-30 18:10:01,329 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 13:11:03] 2025-11-30 18:10:01,330 | INFO     | collected zombie processes
[2025-11-30 13:11:03] 2025-11-30 18:10:01,330 | INFO     | will attempt to kill all subprocesses of pid=261880
[2025-11-30 13:11:03] 2025-11-30 18:10:03,516 | INFO     | process IDs to be killed: [261880] (in reverse order)
[2025-11-30 13:11:03] 2025-11-30 18:10:04,148 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 13:11:03] 2025-11-30 18:10:04,148 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 13:11:03] 2025-11-30 18:10:04,247 | INFO     | did not find any defunct processes belonging to 261880
[2025-11-30 13:11:03] 2025-11-30 18:10:04,433 | INFO     | did not find any defunct processes belonging to 261880
[2025-11-30 13:11:03] 2025-11-30 18:10:04,441 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 13:11:03] 2025-11-30 18:10:04,441 | INFO     | ready for new job
[2025-11-30 13:11:03] 2025-11-30 18:10:04,441 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 13:11:03] 2025-11-30 18:10:04,444 | INFO     | ***************************************
[2025-11-30 13:11:03] 2025-11-30 18:10:04,444 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 13:11:03] 2025-11-30 18:10:04,444 | INFO     | ***************************************
[2025-11-30 13:11:03] 2025-11-30 18:10:04,444 | INFO     | 
[2025-11-30 13:11:03] 2025-11-30 18:10:04,464 | INFO     | architecture information:
[2025-11-30 13:11:03] 2025-11-30 18:10:04,481 | INFO     | executing command: cat /etc/os-release
[2025-11-30 13:11:03] 2025-11-30 18:10:04,603 | INFO     | cat /etc/os-release:
[2025-11-30 13:11:03] NAME="CentOS Linux"
[2025-11-30 13:11:03] VERSION="7 (Core)"
[2025-11-30 13:11:03] ID="centos"
[2025-11-30 13:11:03] ID_LIKE="rhel fedora"
[2025-11-30 13:11:03] VERSION_ID="7"
[2025-11-30 13:11:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 13:11:03] ANSI_COLOR="0;31"
[2025-11-30 13:11:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 13:11:03] HOME_URL="https://www.centos.org/"
[2025-11-30 13:11:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 13:11:03] 
[2025-11-30 13:11:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 13:11:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 13:11:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 13:11:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 13:11:03] 
[2025-11-30 13:11:03] 2025-11-30 18:10:04,603 | INFO     | ***************************************
[2025-11-30 13:11:03] 2025-11-30 18:10:05,108 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-30 13:11:03] 2025-11-30 18:10:05,152 | INFO     | sufficient remaining disk space (161953611776 B)
[2025-11-30 13:11:03] 2025-11-30 18:10:05,153 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 13:11:03] 2025-11-30 18:10:05,153 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 13:11:03] 2025-11-30 18:10:05,153 | INFO     | update_server=False
[2025-11-30 13:11:03] 2025-11-30 18:10:05,153 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 13:11:03] 2025-11-30 18:10:05,160 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 13:11:03] 2025-11-30 18:10:05,160 | INFO     | aborting loop
[2025-11-30 13:11:03] 2025-11-30 18:10:05,205 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 13:11:03] 2025-11-30 18:10:05,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 13:11:03] 2025-11-30 18:10:05,742 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 13:11:03] 2025-11-30 18:10:05,865 | INFO     | all data control threads have been joined
[2025-11-30 13:11:03] 2025-11-30 18:10:06,166 | INFO     | [job] job monitor thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:06,171 | INFO     | [job] retrieve thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:06,211 | INFO     | [job] queue monitor thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:06,244 | INFO     | [data] copytool_in thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:06,318 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:06,418 | INFO     | [payload] validate_post thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:06,418 | INFO     | [payload] failed_post thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:06,634 | INFO     | all payload control threads have been joined
[2025-11-30 13:11:03] 2025-11-30 18:10:06,811 | INFO     | all job control threads have been joined
[2025-11-30 13:11:03] 2025-11-30 18:10:06,814 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:06,871 | INFO     | [data] control thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:07,152 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:07,178 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:07,283 | INFO     | [data] copytool_out thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:07,445 | INFO     | [job] validate thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:07,641 | INFO     | [payload] control thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:07,817 | INFO     | [job] control thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:09,751 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 13:11:03] 2025-11-30 18:10:36,106 | INFO     | PID=247754 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-30 13:11:03] 2025-11-30 18:10:36,106 | INFO     | .. there are 72 such processes running
[2025-11-30 13:11:03] 2025-11-30 18:10:36,111 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 13:11:03] 2025-11-30 18:10:36,111 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 13:11:03] 2025-11-30 18:10:36,111 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 13:11:03] 2025-11-30 18:10:53,302 | INFO     | [monitor] cgroup control has ended
[2025-11-30 13:11:03] 2025-11-30 18:10:53,457 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140504806180672)>', '<ExcThread(monitor, started 140503865612032)>']
[2025-11-30 13:11:03] 2025-11-30 18:10:54,251 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 13:11:03] 2025-11-30 18:10:54,251 | INFO     | [monitor] control thread has ended
[2025-11-30 13:11:03] 2025-11-30 18:10:58,483 | INFO     | all workflow threads have been joined
[2025-11-30 13:11:03] 2025-11-30 18:10:58,485 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 13:11:03] 2025-11-30 18:10:58,496 | INFO     | traces error code: 0
[2025-11-30 13:11:03] 2025-11-30 18:10:58,496 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 13:11:03] 2025-11-30 18:11:00,263 [wrapper] ==== pilot stdout END ====
[2025-11-30 13:11:03] 2025-11-30 18:11:00,286 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 13:11:03] 2025-11-30 18:11:00,316 [wrapper] pilotpid: 247754
[2025-11-30 13:11:03] 2025-11-30 18:11:00,343 [wrapper] Pilot exit status: 0
[2025-11-30 13:11:03] 2025-11-30 18:11:00,496 [wrapper] pandaids: 6893850238
[2025-11-30 13:11:03] 2025-11-30 18:11:01,850 [wrapper] cleanup supervisor_pilot 1316946 247755
[2025-11-30 13:11:03] 2025-11-30 18:11:01,877 [wrapper] Test setup, not cleaning
[2025-11-30 13:11:03] 2025-11-30 18:11:01,901 [wrapper] apfmon messages muted
[2025-11-30 13:11:03] 2025-11-30 18:11:01,921 [wrapper] ==== wrapper stdout END ====
[2025-11-30 13:11:03] 2025-11-30 18:11:01,979 [wrapper] ==== wrapper stderr END ====
[2025-11-30 13:11:03]  *** Error codes and diagnostics ***
[2025-11-30 13:11:03]     "exeErrorCode": 0,
[2025-11-30 13:11:03]     "exeErrorDiag": "",
[2025-11-30 13:11:03]     "pilotErrorCode": 0,
[2025-11-30 13:11:03]     "pilotErrorDiag": "",
[2025-11-30 13:11:03]  *** Listing of results directory ***
[2025-11-30 13:11:03] total 1331712
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:09 pilot3.tar.gz
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 06:15 queuedata.json
[2025-11-30 13:11:03] -rwx------. 1 boincer umatlas     36292 Nov 20 06:16 runpilot2-wrapper.sh
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas       100 Nov 29 23:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 13:11:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 23:00 run_atlas
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas       105 Nov 29 23:00 job.xml
[2025-11-30 13:11:03] -rw-r--r--. 2 boincer umatlas 411463908 Nov 29 23:00 EVNT.47493127._000322.pool.root.1
[2025-11-30 13:11:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 23:00 start_atlas.sh
[2025-11-30 13:11:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 23:00 shared
[2025-11-30 13:11:03] -rw-r--r--. 2 boincer umatlas    590102 Nov 29 23:00 input.tar.gz
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas         0 Nov 29 23:00 boinc_lockfile
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas      2786 Nov 29 23:00 pandaJob.out
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas        57 Nov 29 23:01 setup.sh.local
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas    991420 Nov 29 23:02 agis_schedconf.cvmfs.json
[2025-11-30 13:11:03] drwx------. 5 boincer umatlas      4096 Nov 29 23:02 pilot3
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas       533 Nov 30 12:37 boinc_task_state.xml
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas 931917143 Nov 30 13:07 HITS.47523449._003220.pool.root.1
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas      1070 Nov 30 13:09 memory_monitor_summary.json
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas   1516240 Nov 30 13:09 agis_ddmendpoints.agis.ALL.json
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas   1994863 Nov 30 13:09 log.47523449._003220.job.log.tgz.1
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas      8632 Nov 30 13:09 heartbeat.json
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas        95 Nov 30 13:10 pilot_heartbeat.json
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas      7172 Nov 30 13:10 init_data.xml
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 30 13:10 boinc_mmap_file
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas      4824 Nov 30 13:10 pilotlog.txt
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas        29 Nov 30 13:10 wrapper_checkpoint.txt
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas   6188227 Nov 30 13:11 log.47523449._003220.job.log.1
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas       353 Nov 30 13:11 output.list
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas       620 Nov 30 13:11 runtime_log
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas   8202240 Nov 30 13:11 result.tar.gz
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas       664 Nov 30 13:11 T61LDmSpHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4bHKDmyEhQGm.diag
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas      9338 Nov 30 13:11 runtime_log.err
[2025-11-30 13:11:03] -rw-r--r--. 1 boincer umatlas     21853 Nov 30 13:11 stderr.txt
[2025-11-30 13:11:03] HITS file was successfully produced:
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas 931917143 Nov 30 13:07 shared/HITS.pool.root.1
[2025-11-30 13:11:03]  *** Contents of shared directory: ***
[2025-11-30 13:11:03] total 1320516
[2025-11-30 13:11:03] -rw-r--r--. 2 boincer umatlas 411463908 Nov 29 23:00 ATLAS.root_0
[2025-11-30 13:11:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 23:00 start_atlas.sh
[2025-11-30 13:11:03] -rw-r--r--. 2 boincer umatlas    590102 Nov 29 23:00 input.tar.gz
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas 931917143 Nov 30 13:07 HITS.pool.root.1
[2025-11-30 13:11:03] -rw-------. 1 boincer umatlas   8202240 Nov 30 13:11 result.tar.gz
13:11:04 (234863): run_atlas exited; CPU time 142052.183768
13:11:04 (234863): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN