Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:33:11 (2846813): wrapper (7.7.26015): starting
21:33:11 (2846813): wrapper: running run_atlas (--nthreads 3)
[2025-12-02 21:33:11] Arguments: --nthreads 3
[2025-12-02 21:33:11] Threads: 3
[2025-12-02 21:33:11] Checking for CVMFS
[2025-12-02 21:33:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 21:33:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 21:33:11] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 21:33:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 21:33:11] 2.9.2.0 52203 20966 106976 153568 3 68 29450638 36864000 0 130560 1 7794772 99.957 918794 1138 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-02 21:33:11] CVMFS is ok
[2025-12-02 21:33:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 21:33:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 21:33:11] Further information can be found at the LHC@home message board.
[2025-12-02 21:33:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 21:33:11] Checking for apptainer binary...
[2025-12-02 21:33:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 21:33:11] Running /usr/bin/apptainer --version
[2025-12-02 21:33:11] apptainer version 1.4.1-1.1
[2025-12-02 21:33:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 21:33:11] thA371b
[2025-12-02 21:33:11] apptainer works
[2025-12-02 21:33:11] Set ATHENA_PROC_NUMBER=3
[2025-12-02 21:33:11] Set ATHENA_CORE_NUMBER=3
[2025-12-02 21:33:11] Starting ATLAS job with PandaID=6893862000
[2025-12-02 21:33:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 05:33:04]  *** The last 200 lines of the pilot log: ***
[2025-12-03 05:33:04] 2025-12-03 04:32:32,964 | INFO     | process IDs to be killed: [2856985] (in reverse order)
[2025-12-03 05:33:04] 2025-12-03 04:32:32,988 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 05:33:04] 2025-12-03 04:32:32,988 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 05:33:04] 2025-12-03 04:32:32,989 | INFO     | did not find any defunct processes belonging to 2856985
[2025-12-03 05:33:04] 2025-12-03 04:32:32,990 | INFO     | did not find any defunct processes belonging to 2856985
[2025-12-03 05:33:04] 2025-12-03 04:32:32,991 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 05:33:04] 2025-12-03 04:32:32,991 | INFO     | ready for new job
[2025-12-03 05:33:04] 2025-12-03 04:32:32,991 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 05:33:04] 2025-12-03 04:32:32,992 | INFO     | ***************************************
[2025-12-03 05:33:04] 2025-12-03 04:32:32,992 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 05:33:04] 2025-12-03 04:32:32,992 | INFO     | ***************************************
[2025-12-03 05:33:04] 2025-12-03 04:32:32,992 | INFO     | 
[2025-12-03 05:33:04] 2025-12-03 04:32:32,993 | INFO     | architecture information:
[2025-12-03 05:33:04] 2025-12-03 04:32:32,993 | INFO     | executing command: cat /etc/os-release
[2025-12-03 05:33:04] 2025-12-03 04:32:33,001 | INFO     | cat /etc/os-release:
[2025-12-03 05:33:04] NAME="CentOS Linux"
[2025-12-03 05:33:04] VERSION="7 (Core)"
[2025-12-03 05:33:04] ID="centos"
[2025-12-03 05:33:04] ID_LIKE="rhel fedora"
[2025-12-03 05:33:04] VERSION_ID="7"
[2025-12-03 05:33:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 05:33:04] ANSI_COLOR="0;31"
[2025-12-03 05:33:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 05:33:04] HOME_URL="https://www.centos.org/"
[2025-12-03 05:33:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 05:33:04] 
[2025-12-03 05:33:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 05:33:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 05:33:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 05:33:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 05:33:04] 
[2025-12-03 05:33:04] 2025-12-03 04:32:33,001 | INFO     | ***************************************
[2025-12-03 05:33:04] 2025-12-03 04:32:33,503 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-03 05:33:04] 2025-12-03 04:32:33,516 | INFO     | sufficient remaining disk space (227239002112 B)
[2025-12-03 05:33:04] 2025-12-03 04:32:33,516 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 05:33:04] 2025-12-03 04:32:33,516 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 05:33:04] 2025-12-03 04:32:33,516 | INFO     | update_server=False
[2025-12-03 05:33:04] 2025-12-03 04:32:33,516 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 05:33:04] 2025-12-03 04:32:33,516 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 05:33:04] 2025-12-03 04:32:33,516 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:33:04] 2025-12-03 04:32:33,516 | INFO     | aborting loop
[2025-12-03 05:33:04] 2025-12-03 04:32:33,516 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:33:04] 2025-12-03 04:32:34,093 | INFO     | all data control threads have been joined
[2025-12-03 05:33:04] 2025-12-03 04:32:34,521 | INFO     | [job] queue monitor thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:34,521 | INFO     | [job] job monitor thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:34,522 | INFO     | [job] retrieve thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:34,642 | INFO     | [data] copytool_in thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:34,861 | INFO     | [payload] validate_post thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:34,966 | INFO     | all payload control threads have been joined
[2025-12-03 05:33:04] 2025-12-03 04:32:35,003 | INFO     | [job] validate thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:35,003 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:35,065 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:35,099 | INFO     | [data] control thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:35,213 | INFO     | all job control threads have been joined
[2025-12-03 05:33:04] 2025-12-03 04:32:35,317 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:35,522 | INFO     | [data] copytool_out thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:35,910 | INFO     | [payload] failed_post thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:35,972 | INFO     | [payload] control thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:36,023 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:36,219 | INFO     | [job] control thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:36,668 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 05:33:04] 2025-12-03 04:32:40,675 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 05:33:04] 2025-12-03 04:32:53,986 | INFO     | [monitor] cgroup control has ended
[2025-12-03 05:33:04] 2025-12-03 04:32:55,453 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139849304545088)>', '<ExcThread(monitor, started 139848782419712)>']
[2025-12-03 05:33:04] 2025-12-03 04:33:00,479 | INFO     | all workflow threads have been joined
[2025-12-03 05:33:04] 2025-12-03 04:33:00,479 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 05:33:04] 2025-12-03 04:33:00,480 | INFO     | traces error code: 0
[2025-12-03 05:33:04] 2025-12-03 04:33:00,480 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 05:33:04] 2025-12-03 04:33:04,551 | INFO     | PID=2850533 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 05:33:04] 2025-12-03 04:33:04,552 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 05:33:04] 2025-12-03 04:33:04,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 05:33:04] 2025-12-03 04:33:04,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 05:33:04] 2025-12-03 04:33:04,552 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 05:33:04] 2025-12-03 04:33:04,552 | INFO     | [monitor] control thread has ended
[2025-12-03 05:33:04] 2025-12-03 04:33:04,600 [wrapper] ==== pilot stdout END ====
[2025-12-03 05:33:04] 2025-12-03 04:33:04,603 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 05:33:04] 2025-12-03 04:33:04,605 [wrapper] pilotpid: 2850533
[2025-12-03 05:33:04] 2025-12-03 04:33:04,607 [wrapper] Pilot exit status: 0
[2025-12-03 05:33:04] 2025-12-03 04:33:04,614 [wrapper] pandaids: 6893862000
[2025-12-03 05:33:04] 2025-12-03 04:33:04,630 [wrapper] cleanup supervisor_pilot 2907378 2850534
[2025-12-03 05:33:04] 2025-12-03 04:33:04,632 [wrapper] Test setup, not cleaning
[2025-12-03 05:33:04] 2025-12-03 04:33:04,635 [wrapper] apfmon messages muted
[2025-12-03 05:33:04] 2025-12-03 04:33:04,637 [wrapper] ==== wrapper stdout END ====
[2025-12-03 05:33:04] 2025-12-03 04:33:04,639 [wrapper] ==== wrapper stderr END ====
[2025-12-03 05:33:04]  *** Error codes and diagnostics ***
[2025-12-03 05:33:04]     "exeErrorCode": 0,
[2025-12-03 05:33:04]     "exeErrorDiag": "",
[2025-12-03 05:33:04]     "pilotErrorCode": 0,
[2025-12-03 05:33:04]     "pilotErrorDiag": "",
[2025-12-03 05:33:04]  *** Listing of results directory ***
[2025-12-03 05:33:04] total 1321380
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:09 queuedata.json
[2025-12-03 05:33:04] -rwx------ 1 boinc boinc     36292 Nov 20 15:09 runpilot2-wrapper.sh
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc       100 Dec  2 21:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 05:33:04] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 21:33 run_atlas
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc       105 Dec  2 21:33 job.xml
[2025-12-03 05:33:04] -rw-r--r-- 2 boinc boinc 412244018 Dec  2 21:33 EVNT.47493127._000585.pool.root.1
[2025-12-03 05:33:04] -rw-r--r-- 2 boinc boinc    590103 Dec  2 21:33 input.tar.gz
[2025-12-03 05:33:04] -rw-r--r-- 2 boinc boinc     15847 Dec  2 21:33 start_atlas.sh
[2025-12-03 05:33:04] drwxrwx--x 2 boinc boinc      4096 Dec  2 21:33 shared
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc         0 Dec  2 21:33 boinc_setup_complete
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc      6441 Dec  2 21:33 init_data.xml
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc         0 Dec  2 21:33 boinc_lockfile
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc      2786 Dec  2 21:33 pandaJob.out
[2025-12-03 05:33:04] -rw------- 1 boinc boinc    989224 Dec  2 21:33 agis_schedconf.cvmfs.json
[2025-12-03 05:33:04] drwx------ 5 boinc boinc      4096 Dec  2 21:33 pilot3
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc       532 Dec  3 05:29 boinc_task_state.xml
[2025-12-03 05:33:04] -rw------- 1 boinc boinc 926523945 Dec  3 05:32 HITS.47523449._005844.pool.root.1
[2025-12-03 05:33:04] -rw------- 1 boinc boinc      1040 Dec  3 05:32 memory_monitor_summary.json
[2025-12-03 05:33:04] -rw------- 1 boinc boinc   1516240 Dec  3 05:32 agis_ddmendpoints.agis.ALL.json
[2025-12-03 05:33:04] -rw------- 1 boinc boinc   1162945 Dec  3 05:32 log.47523449._005844.job.log.tgz.1
[2025-12-03 05:33:04] -rw------- 1 boinc boinc      8585 Dec  3 05:32 heartbeat.json
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc      8192 Dec  3 05:32 boinc_mmap_file
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc        28 Dec  3 05:32 wrapper_checkpoint.txt
[2025-12-03 05:33:04] -rw------- 1 boinc boinc       747 Dec  3 05:33 pilotlog.txt
[2025-12-03 05:33:04] -rw------- 1 boinc boinc        95 Dec  3 05:33 pilot_heartbeat.json
[2025-12-03 05:33:04] -rw------- 1 boinc boinc   4047378 Dec  3 05:33 log.47523449._005844.job.log.1
[2025-12-03 05:33:04] -rw------- 1 boinc boinc       353 Dec  3 05:33 output.list
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc       620 Dec  3 05:33 runtime_log
[2025-12-03 05:33:04] -rw------- 1 boinc boinc   5232640 Dec  3 05:33 result.tar.gz
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc      8903 Dec  3 05:33 runtime_log.err
[2025-12-03 05:33:04] -rw------- 1 boinc boinc       666 Dec  3 05:33 fW4KDmNXKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDme2HKDmvXpqYn.diag
[2025-12-03 05:33:04] -rw-r--r-- 1 boinc boinc     10308 Dec  3 05:33 stderr.txt
[2025-12-03 05:33:04] HITS file was successfully produced:
[2025-12-03 05:33:04] -rw------- 1 boinc boinc 926523945 Dec  3 05:32 shared/HITS.pool.root.1
[2025-12-03 05:33:04]  *** Contents of shared directory: ***
[2025-12-03 05:33:04] total 1313112
[2025-12-03 05:33:04] -rw-r--r-- 2 boinc boinc 412244018 Dec  2 21:33 ATLAS.root_0
[2025-12-03 05:33:04] -rw-r--r-- 2 boinc boinc    590103 Dec  2 21:33 input.tar.gz
[2025-12-03 05:33:04] -rw-r--r-- 2 boinc boinc     15847 Dec  2 21:33 start_atlas.sh
[2025-12-03 05:33:04] -rw------- 1 boinc boinc 926523945 Dec  3 05:32 HITS.pool.root.1
[2025-12-03 05:33:04] -rw------- 1 boinc boinc   5232640 Dec  3 05:33 result.tar.gz
05:33:05 (2846813): run_atlas exited; CPU time 84939.956797
05:33:05 (2846813): called boinc_finish(0)

</stderr_txt>
]]>

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