Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:31:39 (335845): wrapper (7.7.26015): starting
22:31:39 (335845): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 22:31:39] Arguments: --nthreads 8
[2025-11-29 22:31:39] Threads: 8
[2025-11-29 22:31:39] Checking for CVMFS
[2025-11-29 22:31:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 22:31:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 22:31:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 22:32:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 22:32:01] 2.13.2.0 5986 40818 381024 153466 2 284 37052457 40960001 10664 16776704 0 85964922 99.757 85621075 37818 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 22:32:01] CVMFS is ok
[2025-11-29 22:32:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 22:32:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 22:32:01] Further information can be found at the LHC@home message board.
[2025-11-29 22:32:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 22:32:01] Checking for apptainer binary...
[2025-11-29 22:32:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 22:32:01] Running /usr/bin/apptainer --version
[2025-11-29 22:32:01] apptainer version 1.4.4-1.el9
[2025-11-29 22:32:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 22:32:01] c-210-31-1.aglt2.org
[2025-11-29 22:32:01] apptainer works
[2025-11-29 22:32:02] Set ATHENA_PROC_NUMBER=8
[2025-11-29 22:32:02] Set ATHENA_CORE_NUMBER=8
[2025-11-29 22:32:02] Starting ATLAS job with PandaID=6893851359
[2025-11-29 22:32:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 16:29:09]  *** The last 200 lines of the pilot log: ***
[2025-12-01 16:29:09] 2025-12-01 21:28:21,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:29:09] 2025-12-01 21:28:22,680 | INFO     | time since job start (150933s) is within the limit (172800.0s)
[2025-12-01 16:29:09] 2025-12-01 21:28:24,078 | INFO     | monitor loop #8121: job 0:6893851359 is in state 'finished'
[2025-12-01 16:29:09] 2025-12-01 21:28:24,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:29:09] 2025-12-01 21:28:24,698 | INFO     | time since job start (150935s) is within the limit (172800.0s)
[2025-12-01 16:29:09] 2025-12-01 21:28:26,596 | INFO     | monitor loop #8122: job 0:6893851359 is in state 'finished'
[2025-12-01 16:29:09] 2025-12-01 21:28:26,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:29:09] 2025-12-01 21:28:26,711 | INFO     | time since job start (150937s) is within the limit (172800.0s)
[2025-12-01 16:29:09] 2025-12-01 21:28:28,718 | INFO     | time since job start (150939s) is within the limit (172800.0s)
[2025-12-01 16:29:09] 2025-12-01 21:28:29,101 | INFO     | monitor loop #8123: job 0:6893851359 is in state 'finished'
[2025-12-01 16:29:09] 2025-12-01 21:28:29,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:29:09] 2025-12-01 21:28:30,734 | INFO     | time since job start (150941s) is within the limit (172800.0s)
[2025-12-01 16:29:09] 2025-12-01 21:28:31,614 | INFO     | monitor loop #8124: job 0:6893851359 is in state 'finished'
[2025-12-01 16:29:09] 2025-12-01 21:28:31,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:29:09] 2025-12-01 21:28:32,287 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-01 16:29:09] 2025-12-01 21:28:32,319 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2727.9263749999986
[2025-12-01 16:29:09] 2025-12-01 21:28:32,395 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893851359/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 16:29:09] 2025-12-01 21:28:32,396 | INFO     | extracted standard info from prmon json
[2025-12-01 16:29:09] 2025-12-01 21:28:32,396 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 16:29:09] 2025-12-01 21:28:32,396 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 16:29:09] 2025-12-01 21:28:32,577 | INFO     | fitting pss+swap vs Time
[2025-12-01 16:29:09] 2025-12-01 21:28:32,580 | INFO     | sum of square deviations: 4683435638475.923
[2025-12-01 16:29:09] 2025-12-01 21:28:32,965 | INFO     | time since job start (150943s) is within the limit (172800.0s)
[2025-12-01 16:29:09] 2025-12-01 21:28:33,164 | INFO     | sum of deviations: 6924591319986.277
[2025-12-01 16:29:09] 2025-12-01 21:28:33,164 | INFO     | mean x: 1764549039.243932
[2025-12-01 16:29:09] 2025-12-01 21:28:33,164 | INFO     | mean y: 3016893.4838187704
[2025-12-01 16:29:09] 2025-12-01 21:28:33,164 | INFO     | intersect: -2605918491.5692945
[2025-12-01 16:29:09] 2025-12-01 21:28:33,167 | INFO     | chi2: 16.783727285776337
[2025-12-01 16:29:09] 2025-12-01 21:28:33,170 | INFO     | sum of square deviations: 4655078104887.636
[2025-12-01 16:29:09] 2025-12-01 21:28:33,289 | INFO     | sum of deviations: 7768134084631.889
[2025-12-01 16:29:09] 2025-12-01 21:28:33,290 | INFO     | mean x: 1764548886.7648966
[2025-12-01 16:29:09] 2025-12-01 21:28:33,290 | INFO     | mean y: 3021428.7981353872
[2025-12-01 16:29:09] 2025-12-01 21:28:33,290 | INFO     | intersect: -2941559100.771414
[2025-12-01 16:29:09] 2025-12-01 21:28:33,293 | INFO     | chi2: 13.815628300986727
[2025-12-01 16:29:09] 2025-12-01 21:28:33,293 | INFO     | current chi2=13.815628300986727 (change=17.684385203905077 %)
[2025-12-01 16:29:09] 2025-12-01 21:28:33,293 | INFO     | right removable region: 2466
[2025-12-01 16:29:09] 2025-12-01 21:28:33,307 | INFO     | sum of square deviations: 4655061451489.915
[2025-12-01 16:29:09] 2025-12-01 21:28:33,645 | INFO     | sum of deviations: 6006349735581.48
[2025-12-01 16:29:09] 2025-12-01 21:28:33,646 | INFO     | mean x: 1764549191.767734
[2025-12-01 16:29:09] 2025-12-01 21:28:33,659 | INFO     | mean y: 3021828.760032428
[2025-12-01 16:29:09] 2025-12-01 21:28:33,659 | INFO     | intersect: -2273747163.8388624
[2025-12-01 16:29:09] 2025-12-01 21:28:33,664 | INFO     | chi2: 13.559901072103992
[2025-12-01 16:29:09] 2025-12-01 21:28:33,665 | INFO     | current chi2=13.559901072103992 (change=19.208046930102544 %)
[2025-12-01 16:29:09] 2025-12-01 21:28:33,665 | INFO     | left removable region: 10
[2025-12-01 16:29:09] 2025-12-01 21:28:33,670 | INFO     | sum of square deviations: 4593061868939.918
[2025-12-01 16:29:09] 2025-12-01 21:28:34,037 | INFO     | sum of deviations: 6476313079458.24
[2025-12-01 16:29:09] 2025-12-01 21:28:34,038 | INFO     | mean x: 1764549161.3171823
[2025-12-01 16:29:09] 2025-12-01 21:28:34,038 | INFO     | mean y: 3030137.7455211724
[2025-12-01 16:29:09] 2025-12-01 21:28:34,038 | INFO     | intersect: -2485021000.878282
[2025-12-01 16:29:09] 2025-12-01 21:28:34,045 | INFO     | chi2: 8.823902355256507
[2025-12-01 16:29:09] 2025-12-01 21:28:34,045 | INFO     | current memory leak: 1.41 B/s (using 2456 data points, chi2=8.82)
[2025-12-01 16:29:09] 2025-12-01 21:28:34,052 | INFO     | could have reported an average CPU frequency of 2736 MHz (85 samples)
[2025-12-01 16:29:09] 2025-12-01 21:28:34,052 | INFO     | ..............................
[2025-12-01 16:29:09] 2025-12-01 21:28:34,053 | INFO     | . Timing measurements:
[2025-12-01 16:29:09] 2025-12-01 21:28:34,053 | INFO     | . get job = 0 s
[2025-12-01 16:29:09] 2025-12-01 21:28:34,053 | INFO     | . initial setup = 4 s
[2025-12-01 16:29:09] 2025-12-01 21:28:34,053 | INFO     | . payload setup = 28 s
[2025-12-01 16:29:09] 2025-12-01 21:28:34,053 | INFO     | . stage-in = 0 s
[2025-12-01 16:29:09] 2025-12-01 21:28:34,053 | INFO     | . payload execution = 150809 s
[2025-12-01 16:29:09] 2025-12-01 21:28:34,053 | INFO     | . stage-out = 16 s
[2025-12-01 16:29:09] 2025-12-01 21:28:34,053 | INFO     | . log creation = 7 s
[2025-12-01 16:29:09] 2025-12-01 21:28:34,053 | INFO     | ..............................
[2025-12-01 16:29:09] 2025-12-01 21:28:35,367 | INFO     | 
[2025-12-01 16:29:09] 2025-12-01 21:28:35,367 | INFO     | job summary report
[2025-12-01 16:29:09] 2025-12-01 21:28:35,367 | INFO     | --------------------------------------------------
[2025-12-01 16:29:09] 2025-12-01 21:28:35,367 | INFO     | PanDA job id: 6893851359
[2025-12-01 16:29:09] 2025-12-01 21:28:35,367 | INFO     | task id: 47523449
[2025-12-01 16:29:09] 2025-12-01 21:28:35,367 | INFO     | errors: (none)
[2025-12-01 16:29:09] 2025-12-01 21:28:35,367 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 16:29:09] 2025-12-01 21:28:35,367 | INFO     | pilot state: finished 
[2025-12-01 16:29:09] 2025-12-01 21:28:35,367 | INFO     | transexitcode: 0
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | exeerrorcode: 0
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | exeerrordiag: 
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | exitcode: 0
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | exitmsg: OK
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | cpuconsumptiontime: 273892 s
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | nevents: 1000
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | neventsw: 0
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | pid: 349548
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | pgrp: 349548
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | corecount: 8
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | event service: False
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | sizes: {0: 2284088, 1: 2284343, 2: 2284343, 12: 2284371, 23: 2284399, 24: 2284689, 34: 2284845, 150842: 2378499, 150859: 2387521, 150861: 2387577, 150900: 2387823}
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | --------------------------------------------------
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | 
[2025-12-01 16:29:09] 2025-12-01 21:28:35,368 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-01 16:29:09] 2025-12-01 21:28:35,420 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,421 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,421 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,421 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,421 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,421 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,421 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,421 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,421 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,421 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,421 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,422 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,422 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,422 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,422 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,422 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,422 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,422 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 16:29:09] 2025-12-01 21:28:35,422 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,422 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 16:29:09] 2025-12-01 21:28:35,422 | INFO     | job 6893851359 has completed (purged errors)
[2025-12-01 16:29:09] 2025-12-01 21:28:35,423 | INFO     | overall cleanup function is called
[2025-12-01 16:29:09] 2025-12-01 21:28:35,551 | INFO     | PID=339686 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 16:29:09] 2025-12-01 21:28:35,552 | INFO     | .. there are 18 such processes running
[2025-12-01 16:29:09] 2025-12-01 21:28:36,486 | INFO     | --- collectZombieJob: --- 10, [349548]
[2025-12-01 16:29:09] 2025-12-01 21:28:36,486 | INFO     | zombie collector waiting for pid 349548
[2025-12-01 16:29:09] 2025-12-01 21:28:36,486 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 16:29:09] 2025-12-01 21:28:36,486 | INFO     | collected zombie processes
[2025-12-01 16:29:09] 2025-12-01 21:28:36,486 | INFO     | will attempt to kill all subprocesses of pid=349548
[2025-12-01 16:29:09] 2025-12-01 21:28:37,256 | INFO     | process IDs to be killed: [349548] (in reverse order)
[2025-12-01 16:29:09] 2025-12-01 21:28:37,430 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 16:29:09] 2025-12-01 21:28:37,430 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 16:29:09] 2025-12-01 21:28:37,559 | INFO     | did not find any defunct processes belonging to 349548
[2025-12-01 16:29:09] 2025-12-01 21:28:37,589 | INFO     | did not find any defunct processes belonging to 349548
[2025-12-01 16:29:09] 2025-12-01 21:28:37,595 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 16:29:09] 2025-12-01 21:28:37,596 | INFO     | ready for new job
[2025-12-01 16:29:09] 2025-12-01 21:28:37,596 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 16:29:09] 2025-12-01 21:28:37,618 | INFO     | ***************************************
[2025-12-01 16:29:09] 2025-12-01 21:28:37,619 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 16:29:09] 2025-12-01 21:28:37,619 | INFO     | ***************************************
[2025-12-01 16:29:09] 2025-12-01 21:28:37,619 | INFO     | 
[2025-12-01 16:29:09] 2025-12-01 21:28:37,624 | INFO     | architecture information:
[2025-12-01 16:29:09] 2025-12-01 21:28:37,625 | INFO     | executing command: cat /etc/os-release
[2025-12-01 16:29:09] 2025-12-01 21:28:37,689 | INFO     | cat /etc/os-release:
[2025-12-01 16:29:09] NAME="CentOS Linux"
[2025-12-01 16:29:09] VERSION="7 (Core)"
[2025-12-01 16:29:09] ID="centos"
[2025-12-01 16:29:09] ID_LIKE="rhel fedora"
[2025-12-01 16:29:09] VERSION_ID="7"
[2025-12-01 16:29:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 16:29:09] ANSI_COLOR="0;31"
[2025-12-01 16:29:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 16:29:09] HOME_URL="https://www.centos.org/"
[2025-12-01 16:29:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 16:29:09] 
[2025-12-01 16:29:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 16:29:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 16:29:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 16:29:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 16:29:09] 
[2025-12-01 16:29:09] 2025-12-01 21:28:37,689 | INFO     | ***************************************
[2025-12-01 16:29:09] 2025-12-01 21:28:38,193 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-01 16:29:09] 2025-12-01 21:28:38,292 | INFO     | sufficient remaining disk space (68948066304 B)
[2025-12-01 16:29:09] 2025-12-01 21:28:38,293 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 16:29:09] 2025-12-01 21:28:38,293 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 16:29:09] 2025-12-01 21:28:38,293 | INFO     | update_server=False
[2025-12-01 16:29:09] 2025-12-01 21:28:38,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 16:29:09] 2025-12-01 21:28:38,299 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:29:09] 2025-12-01 21:28:38,299 | INFO     | aborting loop
[2025-12-01 16:29:09] 2025-12-01 21:28:38,371 | INFO     | all data control threads have been joined
[2025-12-01 16:29:09] 2025-12-01 21:28:38,380 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 16:29:09] 2025-12-01 21:28:38,980 | INFO     | all payload control threads have been joined
[2025-12-01 16:29:09] 2025-12-01 21:28:39,299 | INFO     | [job] retrieve thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:39,305 | INFO     | [job] job monitor thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:39,377 | INFO     | [data] control thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:39,497 | INFO     | all job control threads have been joined
[2025-12-01 16:29:09] 2025-12-01 21:28:39,618 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:39,618 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:39,670 | INFO     | [job] validate thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:39,705 | INFO     | [data] copytool_in thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:39,707 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 16:29:09] 2025-12-01 21:28:39,882 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:29:09] 2025-12-01 21:28:39,992 | INFO     | [payload] control thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:40,206 | INFO     | [payload] validate_post thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:40,466 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:40,466 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:40,512 | INFO     | [job] control thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:40,700 | INFO     | [payload] failed_post thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:40,888 | INFO     | [job] queue monitor thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:41,743 | INFO     | [data] copytool_out thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:42,437 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 16:29:09] 2025-12-01 21:28:48,539 | INFO     | [monitor] cgroup control has ended
[2025-12-01 16:29:09] 2025-12-01 21:28:50,248 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139778556344128)>', '<ExcThread(monitor, started 139778200680192)>']
[2025-12-01 16:29:09] 2025-12-01 21:28:55,274 | INFO     | all workflow threads have been joined
[2025-12-01 16:29:09] 2025-12-01 21:28:55,274 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 16:29:09] 2025-12-01 21:28:55,275 | INFO     | traces error code: 0
[2025-12-01 16:29:09] 2025-12-01 21:28:55,275 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 16:29:09] 2025-12-01 21:29:08,367 | INFO     | PID=339686 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 16:29:09] 2025-12-01 21:29:08,369 | INFO     | .. there are 18 such processes running
[2025-12-01 16:29:09] 2025-12-01 21:29:08,369 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 16:29:09] 2025-12-01 21:29:08,369 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 16:29:09] 2025-12-01 21:29:08,369 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 16:29:09] 2025-12-01 21:29:08,369 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 16:29:09] 2025-12-01 21:29:08,369 | INFO     | [monitor] control thread has ended
[2025-12-01 16:29:09] 2025-12-01 21:29:08,688 [wrapper] ==== pilot stdout END ====
[2025-12-01 16:29:09] 2025-12-01 21:29:08,748 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 16:29:09] 2025-12-01 21:29:08,752 [wrapper] pilotpid: 339686
[2025-12-01 16:29:09] 2025-12-01 21:29:08,789 [wrapper] Pilot exit status: 0
[2025-12-01 16:29:09] 2025-12-01 21:29:08,942 [wrapper] pandaids: 6893851359
[2025-12-01 16:29:09] 2025-12-01 21:29:09,162 [wrapper] cleanup supervisor_pilot  948708 339687
[2025-12-01 16:29:09] 2025-12-01 21:29:09,209 [wrapper] Test setup, not cleaning
[2025-12-01 16:29:09] 2025-12-01 21:29:09,266 [wrapper] apfmon messages muted
[2025-12-01 16:29:09] 2025-12-01 21:29:09,270 [wrapper] ==== wrapper stdout END ====
[2025-12-01 16:29:09] 2025-12-01 21:29:09,273 [wrapper] ==== wrapper stderr END ====
[2025-12-01 16:29:09]  *** Error codes and diagnostics ***
[2025-12-01 16:29:09]     "exeErrorCode": 0,
[2025-12-01 16:29:09]     "exeErrorDiag": "",
[2025-12-01 16:29:09]     "pilotErrorCode": 0,
[2025-12-01 16:29:09]     "pilotErrorDiag": "",
[2025-12-01 16:29:09]  *** Listing of results directory ***
[2025-12-01 16:29:09] total 1355704
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:09 pilot3.tar.gz
[2025-12-01 16:29:09] -rwx------. 1 boincer umatlas     36292 Nov 20 06:43 runpilot2-wrapper.sh
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 06:43 queuedata.json
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas       100 Nov 29 22:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 16:29:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 22:31 run_atlas
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas       105 Nov 29 22:31 job.xml
[2025-12-01 16:29:09] -rw-r--r--. 2 boincer umatlas 411840891 Nov 29 22:31 EVNT.47493127._000358.pool.root.1
[2025-12-01 16:29:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 22:31 start_atlas.sh
[2025-12-01 16:29:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 22:31 shared
[2025-12-01 16:29:09] -rw-r--r--. 2 boincer umatlas    590101 Nov 29 22:31 input.tar.gz
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas         0 Nov 29 22:31 boinc_lockfile
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas      2786 Nov 29 22:32 pandaJob.out
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas        57 Nov 29 22:32 setup.sh.local
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas    991420 Nov 29 22:32 agis_schedconf.cvmfs.json
[2025-12-01 16:29:09] drwx------. 5 boincer umatlas      4096 Nov 29 22:32 pilot3
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas       533 Dec  1 16:03 boinc_task_state.xml
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas 930749854 Dec  1 16:26 HITS.47523449._003577.pool.root.1
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas      1068 Dec  1 16:27 memory_monitor_summary.json
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas   1516240 Dec  1 16:27 agis_ddmendpoints.agis.ALL.json
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas   3099206 Dec  1 16:27 log.47523449._003577.job.log.tgz.1
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas      6846 Dec  1 16:28 init_data.xml
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas        95 Dec  1 16:28 pilot_heartbeat.json
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas      8638 Dec  1 16:28 heartbeat.json
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas        29 Dec  1 16:29 wrapper_checkpoint.txt
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas      8192 Dec  1 16:29 boinc_mmap_file
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas       822 Dec  1 16:29 pilotlog.txt
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas  17768185 Dec  1 16:29 log.47523449._003577.job.log.1
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas       353 Dec  1 16:29 output.list
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas       620 Dec  1 16:29 runtime_log
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas  20889600 Dec  1 16:29 result.tar.gz
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas      9354 Dec  1 16:29 runtime_log.err
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas       667 Dec  1 16:29 EcWNDmUFIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0eHKDmebvy5m.diag
[2025-12-01 16:29:09] -rw-r--r--. 1 boincer umatlas     21893 Dec  1 16:29 stderr.txt
[2025-12-01 16:29:09] HITS file was successfully produced:
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas 930749854 Dec  1 16:26 shared/HITS.pool.root.1
[2025-12-01 16:29:09]  *** Contents of shared directory: ***
[2025-12-01 16:29:09] total 1332128
[2025-12-01 16:29:09] -rw-r--r--. 2 boincer umatlas 411840891 Nov 29 22:31 ATLAS.root_0
[2025-12-01 16:29:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 22:31 start_atlas.sh
[2025-12-01 16:29:09] -rw-r--r--. 2 boincer umatlas    590101 Nov 29 22:31 input.tar.gz
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas 930749854 Dec  1 16:26 HITS.pool.root.1
[2025-12-01 16:29:09] -rw-------. 1 boincer umatlas  20889600 Dec  1 16:29 result.tar.gz
16:29:11 (335845): run_atlas exited; CPU time 276621.102426
16:29:11 (335845): called boinc_finish(0)

</stderr_txt>
]]>

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