Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:48:40 (1410238): wrapper (7.7.26015): starting
22:48:40 (1410238): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 22:48:40] Arguments: --nthreads 8
[2025-11-29 22:48:40] Threads: 8
[2025-11-29 22:48:40] Checking for CVMFS
[2025-11-29 22:48:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 22:48:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 22:48:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 22:48:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 22:48:42] 2.13.3.0 11888 35244 372408 153466 0 328 19489603 32935937 28880 16776704 0 184682675 99.525 224996957 35199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 22:48:42] CVMFS is ok
[2025-11-29 22:48:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 22:48:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 22:48:42] Further information can be found at the LHC@home message board.
[2025-11-29 22:48:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 22:48:42] Checking for apptainer binary...
[2025-11-29 22:48:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 22:48:42] Running /usr/bin/apptainer --version
[2025-11-29 22:48:43] apptainer version 1.4.4-1.el9
[2025-11-29 22:48:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 22:48:43] c6-2-11-3.aglt2.org
[2025-11-29 22:48:43] apptainer works
[2025-11-29 22:48:43] Set ATHENA_PROC_NUMBER=8
[2025-11-29 22:48:43] Set ATHENA_CORE_NUMBER=8
[2025-11-29 22:48:43] Starting ATLAS job with PandaID=6901020663
[2025-11-29 22:48:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:46:36 (3854075): wrapper (7.7.26015): starting
04:46:36 (3854075): wrapper: running run_atlas (--nthreads 9)
[2025-12-01 04:46:36] Arguments: --nthreads 9
[2025-12-01 04:46:36] Threads: 9
[2025-12-01 04:46:36] This job has been restarted, cleaning up previous attempt
[2025-12-01 04:46:37] Checking for CVMFS
[2025-12-01 04:46:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 04:46:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 04:46:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 04:46:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 04:46:38] 2.13.3.0 11888 37042 382644 153512 0 324 22618920 32935936 25702 16776704 0 193513545 99.519 240140231 35395 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-01 04:46:38] CVMFS is ok
[2025-12-01 04:46:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 04:46:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 04:46:38] Further information can be found at the LHC@home message board.
[2025-12-01 04:46:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 04:46:38] Checking for apptainer binary...
[2025-12-01 04:46:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 04:46:38] Running /usr/bin/apptainer --version
[2025-12-01 04:46:38] apptainer version 1.4.4-1.el9
[2025-12-01 04:46:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 04:46:38] c6-2-11-3.aglt2.org
[2025-12-01 04:46:38] apptainer works
[2025-12-01 04:46:38] Set ATHENA_PROC_NUMBER=9
[2025-12-01 04:46:38] Set ATHENA_CORE_NUMBER=9
[2025-12-01 04:46:39] Starting ATLAS job with PandaID=6901020663
[2025-12-01 04:46:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 04:00:05]  *** The last 200 lines of the pilot log: ***
[2025-12-02 04:00:05] 2025-12-02 08:59:06,021 | INFO     | time since job start (83507s) is within the limit (172800.0s)
[2025-12-02 04:00:05] 2025-12-02 08:59:07,962 | INFO     | monitor loop #3964: job 0:6901020663 is in state 'finished'
[2025-12-02 04:00:05] 2025-12-02 08:59:07,962 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:00:05] 2025-12-02 08:59:09,497 | INFO     | PID=3869508 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 04:00:05] 2025-12-02 08:59:09,497 | INFO     | .. there are 67 such processes running
[2025-12-02 04:00:05] 2025-12-02 08:59:10,467 | INFO     | monitor loop #3965: job 0:6901020663 is in state 'finished'
[2025-12-02 04:00:05] 2025-12-02 08:59:10,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:00:05] 2025-12-02 08:59:10,497 | INFO     | time since job start (83511s) is within the limit (172800.0s)
[2025-12-02 04:00:05] 2025-12-02 08:59:12,506 | INFO     | time since job start (83513s) is within the limit (172800.0s)
[2025-12-02 04:00:05] 2025-12-02 08:59:13,001 | INFO     | monitor loop #3966: job 0:6901020663 is in state 'finished'
[2025-12-02 04:00:05] 2025-12-02 08:59:13,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:00:05] 2025-12-02 08:59:14,513 | INFO     | time since job start (83515s) is within the limit (172800.0s)
[2025-12-02 04:00:05] 2025-12-02 08:59:15,024 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 04:00:05] 2025-12-02 08:59:15,072 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2752.342229166666
[2025-12-02 04:00:05] 2025-12-02 08:59:15,146 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6901020663/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 04:00:05] 2025-12-02 08:59:15,147 | INFO     | extracted standard info from prmon json
[2025-12-02 04:00:05] 2025-12-02 08:59:15,147 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 04:00:05] 2025-12-02 08:59:15,147 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 04:00:05] 2025-12-02 08:59:15,325 | INFO     | fitting pss+swap vs Time
[2025-12-02 04:00:05] 2025-12-02 08:59:15,350 | INFO     | sum of square deviations: 792167420027.8641
[2025-12-02 04:00:05] 2025-12-02 08:59:15,646 | INFO     | sum of deviations: 3456699153089.798
[2025-12-02 04:00:05] 2025-12-02 08:59:15,646 | INFO     | mean x: 1764624202.824433
[2025-12-02 04:00:05] 2025-12-02 08:59:15,647 | INFO     | mean y: 3020915.7366495975
[2025-12-02 04:00:05] 2025-12-02 08:59:15,647 | INFO     | intersect: -7697087461.871737
[2025-12-02 04:00:05] 2025-12-02 08:59:15,648 | INFO     | chi2: 16.397789110048738
[2025-12-02 04:00:05] 2025-12-02 08:59:15,673 | INFO     | sum of square deviations: 783509445758.5602
[2025-12-02 04:00:05] 2025-12-02 08:59:15,861 | INFO     | monitor loop #3967: job 0:6901020663 is in state 'finished'
[2025-12-02 04:00:05] 2025-12-02 08:59:15,861 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:00:05] 2025-12-02 08:59:15,957 | INFO     | sum of deviations: 3999875627817.6216
[2025-12-02 04:00:05] 2025-12-02 08:59:15,958 | INFO     | mean x: 1764624050.342144
[2025-12-02 04:00:05] 2025-12-02 08:59:15,958 | INFO     | mean y: 3030480.1982378853
[2025-12-02 04:00:05] 2025-12-02 08:59:15,958 | INFO     | intersect: -9005510220.151375
[2025-12-02 04:00:05] 2025-12-02 08:59:15,974 | INFO     | chi2: 12.374651356403806
[2025-12-02 04:00:05] 2025-12-02 08:59:15,975 | INFO     | current chi2=12.374651356403806 (change=24.534635289214144 %)
[2025-12-02 04:00:05] 2025-12-02 08:59:15,975 | INFO     | right removable region: 1361
[2025-12-02 04:00:05] 2025-12-02 08:59:15,993 | INFO     | sum of square deviations: 783505422808.5594
[2025-12-02 04:00:05] 2025-12-02 08:59:16,235 | INFO     | sum of deviations: 2905402305432.8926
[2025-12-02 04:00:05] 2025-12-02 08:59:16,235 | INFO     | mean x: 1764624355.342144
[2025-12-02 04:00:05] 2025-12-02 08:59:16,235 | INFO     | mean y: 3030621.287812041
[2025-12-02 04:00:05] 2025-12-02 08:59:16,235 | INFO     | intersect: -6540566297.104936
[2025-12-02 04:00:05] 2025-12-02 08:59:16,259 | INFO     | chi2: 12.648848602417393
[2025-12-02 04:00:05] 2025-12-02 08:59:16,259 | INFO     | current chi2=12.648848602417393 (change=22.862475437825662 %)
[2025-12-02 04:00:05] 2025-12-02 08:59:16,259 | INFO     | left removable region: 10
[2025-12-02 04:00:05] 2025-12-02 08:59:16,261 | INFO     | sum of square deviations: 764676686062.5775
[2025-12-02 04:00:05] 2025-12-02 08:59:16,402 | INFO     | sum of deviations: 3211465408984.131
[2025-12-02 04:00:05] 2025-12-02 08:59:16,402 | INFO     | mean x: 1764624324.8800888
[2025-12-02 04:00:05] 2025-12-02 08:59:16,402 | INFO     | mean y: 3047807.2538860105
[2025-12-02 04:00:05] 2025-12-02 08:59:16,402 | INFO     | intersect: -7407966654.798926
[2025-12-02 04:00:05] 2025-12-02 08:59:16,404 | INFO     | chi2: 6.637082699635514
[2025-12-02 04:00:05] 2025-12-02 08:59:16,415 | INFO     | current memory leak: 4.20 B/s (using 1351 data points, chi2=6.64)
[2025-12-02 04:00:05] 2025-12-02 08:59:16,416 | INFO     | could have reported an average CPU frequency of 2679 MHz (49 samples)
[2025-12-02 04:00:05] 2025-12-02 08:59:16,417 | INFO     | ..............................
[2025-12-02 04:00:05] 2025-12-02 08:59:16,417 | INFO     | . Timing measurements:
[2025-12-02 04:00:05] 2025-12-02 08:59:16,417 | INFO     | . get job = 0 s
[2025-12-02 04:00:05] 2025-12-02 08:59:16,417 | INFO     | . initial setup = 3 s
[2025-12-02 04:00:05] 2025-12-02 08:59:16,417 | INFO     | . payload setup = 25 s
[2025-12-02 04:00:05] 2025-12-02 08:59:16,417 | INFO     | . stage-in = 0 s
[2025-12-02 04:00:05] 2025-12-02 08:59:16,417 | INFO     | . payload execution = 83395 s
[2025-12-02 04:00:05] 2025-12-02 08:59:16,417 | INFO     | . stage-out = 23 s
[2025-12-02 04:00:05] 2025-12-02 08:59:16,417 | INFO     | . log creation = 2 s
[2025-12-02 04:00:05] 2025-12-02 08:59:16,417 | INFO     | ..............................
[2025-12-02 04:00:05] 2025-12-02 08:59:16,630 | INFO     | time since job start (83517s) is within the limit (172800.0s)
[2025-12-02 04:00:05] 2025-12-02 08:59:17,083 | INFO     | 
[2025-12-02 04:00:05] 2025-12-02 08:59:17,085 | INFO     | job summary report
[2025-12-02 04:00:05] 2025-12-02 08:59:17,085 | INFO     | --------------------------------------------------
[2025-12-02 04:00:05] 2025-12-02 08:59:17,085 | INFO     | PanDA job id: 6901020663
[2025-12-02 04:00:05] 2025-12-02 08:59:17,085 | INFO     | task id: 47556185
[2025-12-02 04:00:05] 2025-12-02 08:59:17,085 | INFO     | errors: (none)
[2025-12-02 04:00:05] 2025-12-02 08:59:17,085 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | pilot state: finished 
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | transexitcode: 0
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | exeerrorcode: 0
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | exeerrordiag: 
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | exitcode: 0
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | exitmsg: OK
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | cpuconsumptiontime: 251479 s
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | nevents: 1000
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | neventsw: 0
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | pid: 3896517
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | pgrp: 3896517
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | corecount: 9
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | event service: False
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | sizes: {0: 2284145, 1: 2284145, 2: 2284372, 13: 2284372, 18: 2284690, 24: 2284718, 83426: 2346006, 83428: 2346005, 83451: 2355055, 83452: 2355111, 83476: 2355357}
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | --------------------------------------------------
[2025-12-02 04:00:05] 2025-12-02 08:59:17,086 | INFO     | 
[2025-12-02 04:00:05] 2025-12-02 08:59:17,087 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-02 04:00:05] 2025-12-02 08:59:17,319 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,319 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,319 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,319 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,320 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,320 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,320 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,320 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,328 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,329 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,329 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,329 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,329 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,329 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,329 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,329 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,329 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 04:00:05] 2025-12-02 08:59:17,329 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,329 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 04:00:05] 2025-12-02 08:59:17,330 | INFO     | job 6901020663 has completed (purged errors)
[2025-12-02 04:00:05] 2025-12-02 08:59:17,330 | INFO     | overall cleanup function is called
[2025-12-02 04:00:05] 2025-12-02 08:59:18,434 | INFO     | --- collectZombieJob: --- 10, [3896517]
[2025-12-02 04:00:05] 2025-12-02 08:59:18,434 | INFO     | zombie collector waiting for pid 3896517
[2025-12-02 04:00:05] 2025-12-02 08:59:18,435 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 04:00:05] 2025-12-02 08:59:18,435 | INFO     | collected zombie processes
[2025-12-02 04:00:05] 2025-12-02 08:59:18,435 | INFO     | will attempt to kill all subprocesses of pid=3896517
[2025-12-02 04:00:05] 2025-12-02 08:59:21,826 | INFO     | process IDs to be killed: [3896517] (in reverse order)
[2025-12-02 04:00:05] 2025-12-02 08:59:22,222 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 04:00:05] 2025-12-02 08:59:22,222 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 04:00:05] 2025-12-02 08:59:22,397 | INFO     | did not find any defunct processes belonging to 3896517
[2025-12-02 04:00:05] 2025-12-02 08:59:22,549 | INFO     | did not find any defunct processes belonging to 3896517
[2025-12-02 04:00:05] 2025-12-02 08:59:22,586 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 04:00:05] 2025-12-02 08:59:22,586 | INFO     | ready for new job
[2025-12-02 04:00:05] 2025-12-02 08:59:22,586 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 04:00:05] 2025-12-02 08:59:22,609 | INFO     | ***************************************
[2025-12-02 04:00:05] 2025-12-02 08:59:22,609 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 04:00:05] 2025-12-02 08:59:22,626 | INFO     | ***************************************
[2025-12-02 04:00:05] 2025-12-02 08:59:22,626 | INFO     | 
[2025-12-02 04:00:05] 2025-12-02 08:59:22,651 | INFO     | architecture information:
[2025-12-02 04:00:05] 2025-12-02 08:59:22,668 | INFO     | executing command: cat /etc/os-release
[2025-12-02 04:00:05] 2025-12-02 08:59:22,726 | INFO     | cat /etc/os-release:
[2025-12-02 04:00:05] NAME="CentOS Linux"
[2025-12-02 04:00:05] VERSION="7 (Core)"
[2025-12-02 04:00:05] ID="centos"
[2025-12-02 04:00:05] ID_LIKE="rhel fedora"
[2025-12-02 04:00:05] VERSION_ID="7"
[2025-12-02 04:00:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 04:00:05] ANSI_COLOR="0;31"
[2025-12-02 04:00:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 04:00:05] HOME_URL="https://www.centos.org/"
[2025-12-02 04:00:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 04:00:05] 
[2025-12-02 04:00:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 04:00:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 04:00:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 04:00:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 04:00:05] 
[2025-12-02 04:00:05] 2025-12-02 08:59:22,727 | INFO     | ***************************************
[2025-12-02 04:00:05] 2025-12-02 08:59:23,230 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-02 04:00:05] 2025-12-02 08:59:23,333 | INFO     | sufficient remaining disk space (66092793856 B)
[2025-12-02 04:00:05] 2025-12-02 08:59:23,333 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 04:00:05] 2025-12-02 08:59:23,333 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 04:00:05] 2025-12-02 08:59:23,333 | INFO     | update_server=False
[2025-12-02 04:00:05] 2025-12-02 08:59:23,333 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 04:00:05] 2025-12-02 08:59:23,400 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 04:00:05] 2025-12-02 08:59:23,451 | INFO     | all payload control threads have been joined
[2025-12-02 04:00:05] 2025-12-02 08:59:23,508 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 04:00:05] 2025-12-02 08:59:23,509 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 04:00:05] 2025-12-02 08:59:23,509 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:00:05] 2025-12-02 08:59:23,509 | INFO     | will abort loop
[2025-12-02 04:00:05] 2025-12-02 08:59:24,339 | INFO     | [job] retrieve thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:24,409 | INFO     | all data control threads have been joined
[2025-12-02 04:00:05] 2025-12-02 08:59:24,457 | INFO     | [payload] control thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:24,482 | INFO     | all job control threads have been joined
[2025-12-02 04:00:05] 2025-12-02 08:59:24,528 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:24,529 | INFO     | [job] job monitor thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:24,736 | INFO     | [payload] validate_post thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:24,903 | INFO     | [job] validate thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:24,904 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:25,187 | INFO     | [data] copytool_in thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:25,188 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:25,338 | INFO     | [payload] failed_post thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:25,415 | INFO     | [data] control thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:25,416 | INFO     | [data] copytool_out thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:25,488 | INFO     | [job] control thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:25,823 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:26,234 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:00:05] 2025-12-02 08:59:26,816 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 04:00:05] 2025-12-02 08:59:27,245 | INFO     | [job] queue monitor thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:30,837 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 04:00:05] 2025-12-02 08:59:53,637 | INFO     | PID=3869508 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 04:00:05] 2025-12-02 08:59:53,637 | INFO     | .. there are 67 such processes running
[2025-12-02 04:00:05] 2025-12-02 08:59:53,656 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 04:00:05] 2025-12-02 08:59:53,656 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 04:00:05] 2025-12-02 08:59:53,657 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 04:00:05] 2025-12-02 08:59:55,638 | INFO     | [monitor] cgroup control has ended
[2025-12-02 04:00:05] 2025-12-02 08:59:56,895 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140549109159744)>', '<ExcThread(monitor, started 140548761442048)>']
[2025-12-02 04:00:05] 2025-12-02 08:59:57,680 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 04:00:05] 2025-12-02 08:59:57,680 | INFO     | [monitor] control thread has ended
[2025-12-02 04:00:05] 2025-12-02 09:00:01,940 | INFO     | all workflow threads have been joined
[2025-12-02 04:00:05] 2025-12-02 09:00:01,940 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 04:00:05] 2025-12-02 09:00:01,941 | INFO     | traces error code: 0
[2025-12-02 04:00:05] 2025-12-02 09:00:01,941 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 04:00:05] 2025-12-02 09:00:04,065 [wrapper] ==== pilot stdout END ====
[2025-12-02 04:00:05] 2025-12-02 09:00:04,085 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 04:00:05] 2025-12-02 09:00:04,107 [wrapper] pilotpid: 3869508
[2025-12-02 04:00:05] 2025-12-02 09:00:04,152 [wrapper] Pilot exit status: 0
[2025-12-02 04:00:05] 2025-12-02 09:00:04,262 [wrapper] pandaids: 6901020663 6901020663
[2025-12-02 04:00:05] 2025-12-02 09:00:04,477 [wrapper] cleanup supervisor_pilot 1046811 3869509
[2025-12-02 04:00:05] 2025-12-02 09:00:04,486 [wrapper] Test setup, not cleaning
[2025-12-02 04:00:05] 2025-12-02 09:00:04,502 [wrapper] apfmon messages muted
[2025-12-02 04:00:05] 2025-12-02 09:00:04,514 [wrapper] ==== wrapper stdout END ====
[2025-12-02 04:00:05] 2025-12-02 09:00:04,551 [wrapper] ==== wrapper stderr END ====
[2025-12-02 04:00:05]  *** Error codes and diagnostics ***
[2025-12-02 04:00:05]     "exeErrorCode": 0,
[2025-12-02 04:00:05]     "exeErrorDiag": "",
[2025-12-02 04:00:05]     "pilotErrorCode": 0,
[2025-12-02 04:00:05]     "pilotErrorDiag": "",
[2025-12-02 04:00:05]  *** Listing of results directory ***
[2025-12-02 04:00:05] total 1727732
[2025-12-02 04:00:05] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 27 19:58 pilot3.tar.gz
[2025-12-02 04:00:05] -rwx------. 1 boincer umatlas     36292 Nov 27 20:00 runpilot2-wrapper.sh
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 27 20:04 queuedata.json
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas       100 Nov 29 22:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 04:00:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 22:48 run_atlas
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas       105 Nov 29 22:48 job.xml
[2025-12-02 04:00:05] -rw-r--r--. 3 boincer umatlas 409398151 Nov 29 22:48 EVNT.47483658._004537.pool.root.1
[2025-12-02 04:00:05] -rw-r--r--. 3 boincer umatlas 409398151 Nov 29 22:48 ATLAS.root_0
[2025-12-02 04:00:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 22:48 start_atlas.sh
[2025-12-02 04:00:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 22:48 shared
[2025-12-02 04:00:05] -rw-r--r--. 2 boincer umatlas    590102 Nov 29 22:48 input.tar.gz
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas         0 Nov 29 22:48 boinc_lockfile
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas      2787 Dec  1 04:46 pandaJob.out
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas        57 Dec  1 04:46 setup.sh.local
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas    992532 Dec  1 04:47 agis_schedconf.cvmfs.json
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas       534 Dec  2 03:35 boinc_task_state.xml
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas      6880 Dec  2 03:54 init_data.xml
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas 923343248 Dec  2 03:55 HITS.47556185._003002.pool.root.1
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas      1070 Dec  2 03:58 memory_monitor_summary.json
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas   1516240 Dec  2 03:58 agis_ddmendpoints.agis.ALL.json
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas   2422682 Dec  2 03:58 log.47556185._003002.job.log.tgz.1
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas      8641 Dec  2 03:59 heartbeat.json
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas        30 Dec  2 03:59 wrapper_checkpoint.txt
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 03:59 boinc_mmap_file
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas        96 Dec  2 03:59 pilot_heartbeat.json
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas      5010 Dec  2 04:00 pilotlog.txt
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas   9143167 Dec  2 04:00 log.47556185._003002.job.log.1
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas       353 Dec  2 04:00 output.list
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas       620 Dec  2 04:00 runtime_log
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas  11581440 Dec  2 04:00 result.tar.gz
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas      9433 Dec  2 04:00 runtime_log.err
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas       790 Dec  2 04:00 Qc0LDmB21i8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFIOKDmSZ9ESn.diag
[2025-12-02 04:00:05] -rw-r--r--. 1 boincer umatlas     24037 Dec  2 04:00 stderr.txt
[2025-12-02 04:00:05] HITS file was successfully produced:
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas 923343248 Dec  2 03:55 shared/HITS.pool.root.1
[2025-12-02 04:00:05]  *** Contents of shared directory: ***
[2025-12-02 04:00:05] total 1313424
[2025-12-02 04:00:05] -rw-r--r--. 3 boincer umatlas 409398151 Nov 29 22:48 ATLAS.root_0
[2025-12-02 04:00:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 22:48 start_atlas.sh
[2025-12-02 04:00:05] -rw-r--r--. 2 boincer umatlas    590102 Nov 29 22:48 input.tar.gz
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas 923343248 Dec  2 03:55 HITS.pool.root.1
[2025-12-02 04:00:05] -rw-------. 1 boincer umatlas  11581440 Dec  2 04:00 result.tar.gz
04:00:07 (3854075): run_atlas exited; CPU time 254755.520499
04:00:07 (3854075): called boinc_finish(0)

</stderr_txt>
]]>

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