Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:59:14 (1106453): wrapper (7.7.26015): starting
21:59:14 (1106453): wrapper: running run_atlas (--nthreads 9)
[2025-11-29 21:59:14] Arguments: --nthreads 9
[2025-11-29 21:59:14] Threads: 9
[2025-11-29 21:59:14] Checking for CVMFS
[2025-11-29 21:59:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 21:59:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 21:59:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 21:59:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 21:59:16] 2.13.3.0 11888 35194 368900 153464 1 342 19310858 32935936 29769 16776704 0 184421373 99.524 224959730 35199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 21:59:16] CVMFS is ok
[2025-11-29 21:59:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 21:59:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 21:59:16] Further information can be found at the LHC@home message board.
[2025-11-29 21:59:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 21:59:16] Checking for apptainer binary...
[2025-11-29 21:59:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 21:59:16] Running /usr/bin/apptainer --version
[2025-11-29 21:59:16] apptainer version 1.4.4-1.el9
[2025-11-29 21:59:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 21:59:17] c6-2-11-3.aglt2.org
[2025-11-29 21:59:17] apptainer works
[2025-11-29 21:59:17] Set ATHENA_PROC_NUMBER=9
[2025-11-29 21:59:17] Set ATHENA_CORE_NUMBER=9
[2025-11-29 21:59:17] Starting ATLAS job with PandaID=6901020676
[2025-11-29 21:59:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 01:58:24]  *** The last 200 lines of the pilot log: ***
[2025-12-01 01:58:24] 2025-12-01 06:48:02,269 | INFO     | time since job start (100072s) is within the limit (172800.0s)
[2025-12-01 01:58:24] 2025-12-01 06:48:02,343 | INFO     | monitor loop #4486: job 0:6901020676 is in state 'finished'
[2025-12-01 01:58:24] 2025-12-01 06:48:02,344 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 01:58:24] 2025-12-01 06:48:04,290 | INFO     | time since job start (100074s) is within the limit (172800.0s)
[2025-12-01 01:58:24] 2025-12-01 06:48:04,847 | INFO     | monitor loop #4487: job 0:6901020676 is in state 'finished'
[2025-12-01 01:58:24] 2025-12-01 06:48:04,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 01:58:24] 2025-12-01 06:48:07,384 | INFO     | monitor loop #4488: job 0:6901020676 is in state 'finished'
[2025-12-01 01:58:24] 2025-12-01 06:48:07,384 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 01:58:24] 2025-12-01 06:48:07,766 | INFO     | PID=1126766 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 01:58:24] 2025-12-01 06:48:07,767 | INFO     | .. there are 53 such processes running
[2025-12-01 01:58:24] 2025-12-01 06:48:08,767 | INFO     | time since job start (100078s) is within the limit (172800.0s)
[2025-12-01 01:58:24] 2025-12-01 06:48:09,893 | INFO     | monitor loop #4489: job 0:6901020676 is in state 'finished'
[2025-12-01 01:58:24] 2025-12-01 06:48:09,893 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 01:58:24] 2025-12-01 06:48:10,795 | INFO     | time since job start (100080s) is within the limit (172800.0s)
[2025-12-01 01:58:24] 2025-12-01 06:48:12,399 | INFO     | monitor loop #4490: job 0:6901020676 is in state 'finished'
[2025-12-01 01:58:24] 2025-12-01 06:48:12,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 01:58:24] 2025-12-01 06:48:12,803 | INFO     | time since job start (100082s) is within the limit (172800.0s)
[2025-12-01 01:58:24] 2025-12-01 06:48:13,021 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-01 01:58:24] 2025-12-01 06:48:13,055 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2626.81103125
[2025-12-01 01:58:24] 2025-12-01 06:48:13,093 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6901020676/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 01:58:24] 2025-12-01 06:48:13,094 | INFO     | extracted standard info from prmon json
[2025-12-01 01:58:24] 2025-12-01 06:48:13,094 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 01:58:24] 2025-12-01 06:48:13,094 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 01:58:24] 2025-12-01 06:48:13,148 | INFO     | fitting pss+swap vs Time
[2025-12-01 01:58:24] 2025-12-01 06:48:13,154 | INFO     | sum of square deviations: 1362797013226.5247
[2025-12-01 01:58:24] 2025-12-01 06:48:13,620 | INFO     | sum of deviations: 1163177669985.1372
[2025-12-01 01:58:24] 2025-12-01 06:48:13,620 | INFO     | mean x: 1764521670.9200244
[2025-12-01 01:58:24] 2025-12-01 06:48:13,620 | INFO     | mean y: 3040664.459096459
[2025-12-01 01:58:24] 2025-12-01 06:48:13,620 | INFO     | intersect: -1503017967.8237112
[2025-12-01 01:58:24] 2025-12-01 06:48:13,622 | INFO     | chi2: 33.31946877533035
[2025-12-01 01:58:24] 2025-12-01 06:48:13,624 | INFO     | sum of square deviations: 1350357769451.0408
[2025-12-01 01:58:24] 2025-12-01 06:48:13,677 | INFO     | sum of deviations: 1761970025908.0642
[2025-12-01 01:58:24] 2025-12-01 06:48:13,678 | INFO     | mean x: 1764521518.433558
[2025-12-01 01:58:24] 2025-12-01 06:48:13,678 | INFO     | mean y: 3048003.290875689
[2025-12-01 01:58:24] 2025-12-01 06:48:13,678 | INFO     | intersect: -2299330000.4389243
[2025-12-01 01:58:24] 2025-12-01 06:48:13,680 | INFO     | chi2: 29.773483767443928
[2025-12-01 01:58:24] 2025-12-01 06:48:13,680 | INFO     | current chi2=29.773483767443928 (change=10.642381581160922 %)
[2025-12-01 01:58:24] 2025-12-01 06:48:13,680 | INFO     | right removable region: 1632
[2025-12-01 01:58:24] 2025-12-01 06:48:13,682 | INFO     | sum of square deviations: 1350353353051.042
[2025-12-01 01:58:24] 2025-12-01 06:48:13,766 | INFO     | sum of deviations: 468819712086.7605
[2025-12-01 01:58:24] 2025-12-01 06:48:13,767 | INFO     | mean x: 1764521823.433558
[2025-12-01 01:58:24] 2025-12-01 06:48:13,767 | INFO     | mean y: 3049174.2927127983
[2025-12-01 01:58:24] 2025-12-01 06:48:13,767 | INFO     | intersect: -609562784.9132398
[2025-12-01 01:58:24] 2025-12-01 06:48:13,769 | INFO     | chi2: 29.23766703832642
[2025-12-01 01:58:24] 2025-12-01 06:48:13,773 | INFO     | current chi2=29.23766703832642 (change=12.250500644314247 %)
[2025-12-01 01:58:24] 2025-12-01 06:48:13,773 | INFO     | left removable region: 10
[2025-12-01 01:58:24] 2025-12-01 06:48:13,775 | INFO     | sum of square deviations: 1323249634186.855
[2025-12-01 01:58:24] 2025-12-01 06:48:14,054 | INFO     | sum of deviations: 608517338626.2742
[2025-12-01 01:58:24] 2025-12-01 06:48:14,055 | INFO     | mean x: 1764521792.9636252
[2025-12-01 01:58:24] 2025-12-01 06:48:14,055 | INFO     | mean y: 3064910.4623921085
[2025-12-01 01:58:24] 2025-12-01 06:48:14,055 | INFO     | intersect: -808378431.490321
[2025-12-01 01:58:24] 2025-12-01 06:48:14,101 | INFO     | chi2: 22.451061795828508
[2025-12-01 01:58:24] 2025-12-01 06:48:14,102 | INFO     | current memory leak: 0.46 B/s (using 1622 data points, chi2=22.45)
[2025-12-01 01:58:24] 2025-12-01 06:48:14,103 | INFO     | could have reported an average CPU frequency of 2653 MHz (58 samples)
[2025-12-01 01:58:24] 2025-12-01 06:48:14,104 | INFO     | ..............................
[2025-12-01 01:58:24] 2025-12-01 06:48:14,104 | INFO     | . Timing measurements:
[2025-12-01 01:58:24] 2025-12-01 06:48:14,104 | INFO     | . get job = 0 s
[2025-12-01 01:58:24] 2025-12-01 06:48:14,104 | INFO     | . initial setup = 4 s
[2025-12-01 01:58:24] 2025-12-01 06:48:14,104 | INFO     | . payload setup = 38 s
[2025-12-01 01:58:24] 2025-12-01 06:48:14,104 | INFO     | . stage-in = 0 s
[2025-12-01 01:58:24] 2025-12-01 06:48:14,104 | INFO     | . payload execution = 99937 s
[2025-12-01 01:58:24] 2025-12-01 06:48:14,104 | INFO     | . stage-out = 9 s
[2025-12-01 01:58:24] 2025-12-01 06:48:14,104 | INFO     | . log creation = 1 s
[2025-12-01 01:58:24] 2025-12-01 06:48:14,104 | INFO     | ..............................
[2025-12-01 01:58:24] 2025-12-01 06:48:14,558 | INFO     | 
[2025-12-01 01:58:24] 2025-12-01 06:48:14,559 | INFO     | job summary report
[2025-12-01 01:58:24] 2025-12-01 06:48:14,560 | INFO     | --------------------------------------------------
[2025-12-01 01:58:24] 2025-12-01 06:48:14,560 | INFO     | PanDA job id: 6901020676
[2025-12-01 01:58:24] 2025-12-01 06:48:14,560 | INFO     | task id: 47556185
[2025-12-01 01:58:24] 2025-12-01 06:48:14,560 | INFO     | errors: (none)
[2025-12-01 01:58:24] 2025-12-01 06:48:14,560 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 01:58:24] 2025-12-01 06:48:14,560 | INFO     | pilot state: finished 
[2025-12-01 01:58:24] 2025-12-01 06:48:14,560 | INFO     | transexitcode: 0
[2025-12-01 01:58:24] 2025-12-01 06:48:14,560 | INFO     | exeerrorcode: 0
[2025-12-01 01:58:24] 2025-12-01 06:48:14,560 | INFO     | exeerrordiag: 
[2025-12-01 01:58:24] 2025-12-01 06:48:14,560 | INFO     | exitcode: 0
[2025-12-01 01:58:24] 2025-12-01 06:48:14,560 | INFO     | exitmsg: OK
[2025-12-01 01:58:24] 2025-12-01 06:48:14,560 | INFO     | cpuconsumptiontime: 252982 s
[2025-12-01 01:58:24] 2025-12-01 06:48:14,561 | INFO     | nevents: 1000
[2025-12-01 01:58:24] 2025-12-01 06:48:14,561 | INFO     | neventsw: 0
[2025-12-01 01:58:24] 2025-12-01 06:48:14,561 | INFO     | pid: 1164086
[2025-12-01 01:58:24] 2025-12-01 06:48:14,561 | INFO     | pgrp: 1164086
[2025-12-01 01:58:24] 2025-12-01 06:48:14,561 | INFO     | corecount: 9
[2025-12-01 01:58:24] 2025-12-01 06:48:14,561 | INFO     | event service: False
[2025-12-01 01:58:24] 2025-12-01 06:48:14,561 | INFO     | sizes: {0: 2284145, 1: 2284344, 12: 2284344, 24: 2284372, 29: 2284662, 34: 2284690, 99977: 2351601, 99988: 2360623, 99990: 2360679, 100020: 2360925}
[2025-12-01 01:58:24] 2025-12-01 06:48:14,561 | INFO     | --------------------------------------------------
[2025-12-01 01:58:24] 2025-12-01 06:48:14,561 | INFO     | 
[2025-12-01 01:58:24] 2025-12-01 06:48:14,561 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-12-01 01:58:24] 2025-12-01 06:48:14,645 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,645 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,645 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,645 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,645 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,645 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,645 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,645 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,645 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,646 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,646 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,646 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,646 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,646 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,646 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,646 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,646 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,646 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 01:58:24] 2025-12-01 06:48:14,646 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,646 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 01:58:24] 2025-12-01 06:48:14,647 | INFO     | job 6901020676 has completed (purged errors)
[2025-12-01 01:58:24] 2025-12-01 06:48:14,647 | INFO     | overall cleanup function is called
[2025-12-01 01:58:24] 2025-12-01 06:48:15,677 | INFO     | --- collectZombieJob: --- 10, [1164086]
[2025-12-01 01:58:24] 2025-12-01 06:48:15,677 | INFO     | zombie collector waiting for pid 1164086
[2025-12-01 01:58:24] 2025-12-01 06:48:15,678 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 01:58:24] 2025-12-01 06:48:15,678 | INFO     | collected zombie processes
[2025-12-01 01:58:24] 2025-12-01 06:48:15,678 | INFO     | will attempt to kill all subprocesses of pid=1164086
[2025-12-01 01:58:24] 2025-12-01 06:48:18,045 | INFO     | process IDs to be killed: [1164086] (in reverse order)
[2025-12-01 01:58:24] 2025-12-01 06:48:18,312 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 01:58:24] 2025-12-01 06:48:18,312 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 01:58:24] 2025-12-01 06:48:18,365 | INFO     | did not find any defunct processes belonging to 1164086
[2025-12-01 01:58:24] 2025-12-01 06:48:18,394 | INFO     | did not find any defunct processes belonging to 1164086
[2025-12-01 01:58:24] 2025-12-01 06:48:18,396 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 01:58:24] 2025-12-01 06:48:18,396 | INFO     | ready for new job
[2025-12-01 01:58:24] 2025-12-01 06:48:18,397 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 01:58:24] 2025-12-01 06:48:18,405 | INFO     | ***************************************
[2025-12-01 01:58:24] 2025-12-01 06:48:18,405 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 01:58:24] 2025-12-01 06:48:18,405 | INFO     | ***************************************
[2025-12-01 01:58:24] 2025-12-01 06:48:18,405 | INFO     | 
[2025-12-01 01:58:24] 2025-12-01 06:48:18,413 | INFO     | architecture information:
[2025-12-01 01:58:24] 2025-12-01 06:48:18,416 | INFO     | executing command: cat /etc/os-release
[2025-12-01 01:58:24] 2025-12-01 06:48:18,478 | INFO     | cat /etc/os-release:
[2025-12-01 01:58:24] NAME="CentOS Linux"
[2025-12-01 01:58:24] VERSION="7 (Core)"
[2025-12-01 01:58:24] ID="centos"
[2025-12-01 01:58:24] ID_LIKE="rhel fedora"
[2025-12-01 01:58:24] VERSION_ID="7"
[2025-12-01 01:58:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 01:58:24] ANSI_COLOR="0;31"
[2025-12-01 01:58:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 01:58:24] HOME_URL="https://www.centos.org/"
[2025-12-01 01:58:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 01:58:24] 
[2025-12-01 01:58:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 01:58:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 01:58:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 01:58:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 01:58:24] 
[2025-12-01 01:58:24] 2025-12-01 06:48:18,482 | INFO     | ***************************************
[2025-12-01 01:58:24] 2025-12-01 06:48:19,006 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-12-01 01:58:24] 2025-12-01 06:48:19,080 | INFO     | sufficient remaining disk space (66253225984 B)
[2025-12-01 01:58:24] 2025-12-01 06:48:19,080 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 01:58:24] 2025-12-01 06:48:19,080 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 01:58:24] 2025-12-01 06:48:19,080 | INFO     | update_server=False
[2025-12-01 01:58:24] 2025-12-01 06:48:19,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 01:58:24] 2025-12-01 06:48:19,087 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 01:58:24] 2025-12-01 06:48:19,092 | INFO     | aborting loop
[2025-12-01 01:58:24] 2025-12-01 06:48:19,335 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 01:58:24] 2025-12-01 06:48:19,483 | INFO     | all data control threads have been joined
[2025-12-01 01:58:24] 2025-12-01 06:48:19,557 | INFO     | all job control threads have been joined
[2025-12-01 01:58:24] 2025-12-01 06:48:19,959 | INFO     | all payload control threads have been joined
[2025-12-01 01:58:24] 2025-12-01 06:48:20,086 | INFO     | [job] retrieve thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:20,097 | INFO     | [job] job monitor thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:20,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 01:58:24] 2025-12-01 06:48:20,340 | INFO     | [job] queue monitor thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:20,489 | INFO     | [data] control thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:20,563 | INFO     | [job] control thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:20,617 | INFO     | [payload] failed_post thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:20,655 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:20,842 | INFO     | [data] copytool_in thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:20,965 | INFO     | [payload] control thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:21,169 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:21,170 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:21,233 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:21,448 | INFO     | [payload] validate_post thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:21,607 | INFO     | [job] validate thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:21,724 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 01:58:24] 2025-12-01 06:48:22,166 | INFO     | [data] copytool_out thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:25,646 | INFO     | [monitor] cgroup control has ended
[2025-12-01 01:58:24] 2025-12-01 06:48:25,740 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 01:58:24] 2025-12-01 06:48:26,331 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140279656044352)>', '<ExcThread(monitor, started 140279285782272)>']
[2025-12-01 01:58:24] 2025-12-01 06:48:31,359 | INFO     | all workflow threads have been joined
[2025-12-01 01:58:24] 2025-12-01 06:48:31,359 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 01:58:24] 2025-12-01 06:48:31,359 | INFO     | traces error code: 0
[2025-12-01 01:58:24] 2025-12-01 06:48:31,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 01:58:24] 2025-12-01 06:48:48,116 | INFO     | PID=1126766 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 01:58:24] 2025-12-01 06:48:48,116 | INFO     | .. there are 53 such processes running
[2025-12-01 01:58:24] 2025-12-01 06:48:48,116 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 01:58:24] 2025-12-01 06:48:48,117 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 01:58:24] 2025-12-01 06:48:48,117 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 01:58:24] 2025-12-01 06:48:48,117 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 01:58:24] 2025-12-01 06:48:48,117 | INFO     | [monitor] control thread has ended
[2025-12-01 01:58:24] 2025-12-01 06:48:49,956 [wrapper] ==== pilot stdout END ====
[2025-12-01 01:58:24] 2025-12-01 06:48:49,967 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 01:58:24] 2025-12-01 06:48:49,994 [wrapper] pilotpid: 1126766
[2025-12-01 01:58:24] 2025-12-01 06:48:50,013 [wrapper] Pilot exit status: 0
[2025-12-01 01:58:24] 2025-12-01 06:48:50,136 [wrapper] pandaids: 6901020676
[2025-12-01 01:58:24] 2025-12-01 06:48:50,660 [wrapper] cleanup supervisor_pilot 3261658 1126767
[2025-12-01 01:58:24] 2025-12-01 06:48:50,674 [wrapper] Test setup, not cleaning
[2025-12-01 01:58:24] 2025-12-01 06:48:50,693 [wrapper] apfmon messages muted
[2025-12-01 01:58:24] 2025-12-01 06:48:50,742 [wrapper] ==== wrapper stdout END ====
[2025-12-01 01:58:24] 2025-12-01 06:48:50,756 [wrapper] ==== wrapper stderr END ====
[2025-12-01 01:58:24]  *** Error codes and diagnostics ***
[2025-12-01 01:58:24]     "exeErrorCode": 0,
[2025-12-01 01:58:24]     "exeErrorDiag": "",
[2025-12-01 01:58:24]     "pilotErrorCode": 0,
[2025-12-01 01:58:24]     "pilotErrorDiag": "",
[2025-12-01 01:58:24]  *** Listing of results directory ***
[2025-12-01 01:58:24] total 1316608
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 27 19:58 pilot3.tar.gz
[2025-12-01 01:58:24] -rwx------. 1 boincer umatlas     36292 Nov 27 20:00 runpilot2-wrapper.sh
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 27 20:04 queuedata.json
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas       100 Nov 29 21:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 01:58:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 21:59 run_atlas
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas       105 Nov 29 21:59 job.xml
[2025-12-01 01:58:24] -rw-r--r--. 2 boincer umatlas 407405184 Nov 29 21:59 EVNT.47483658._004538.pool.root.1
[2025-12-01 01:58:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 21:59 start_atlas.sh
[2025-12-01 01:58:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 21:59 shared
[2025-12-01 01:58:24] -rw-r--r--. 2 boincer umatlas    590104 Nov 29 21:59 input.tar.gz
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas         0 Nov 29 21:59 boinc_lockfile
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas      2787 Nov 29 21:59 pandaJob.out
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas        57 Nov 29 21:59 setup.sh.local
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas    991772 Nov 29 22:00 agis_schedconf.cvmfs.json
[2025-12-01 01:58:24] drwx------. 5 boincer umatlas      4096 Nov 29 22:00 pilot3
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas       533 Dec  1 00:51 boinc_task_state.xml
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas 910710109 Dec  1 01:45 HITS.47556185._003015.pool.root.1
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas      1059 Dec  1 01:47 memory_monitor_summary.json
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas   1516240 Dec  1 01:47 agis_ddmendpoints.agis.ALL.json
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas   2567417 Dec  1 01:47 log.47556185._003015.job.log.tgz.1
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas        95 Dec  1 01:47 pilot_heartbeat.json
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas      7956 Dec  1 01:48 heartbeat.json
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas       823 Dec  1 01:48 pilotlog.txt
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas  10519402 Dec  1 01:48 log.47556185._003015.job.log.1
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas       353 Dec  1 01:48 output.list
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas       620 Dec  1 01:48 runtime_log
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas  13107200 Dec  1 01:48 result.tar.gz
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas       664 Dec  1 01:48 uUEMDmB21i8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOIOKDmR7wCRn.diag
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas      9349 Dec  1 01:48 runtime_log.err
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas        29 Dec  1 01:58 wrapper_checkpoint.txt
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas      6879 Dec  1 01:58 init_data.xml
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas      8192 Dec  1 01:58 boinc_mmap_file
[2025-12-01 01:58:24] -rw-r--r--. 1 boincer umatlas     21885 Dec  1 01:58 stderr.txt
[2025-12-01 01:58:24] HITS file was successfully produced:
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas 910710109 Dec  1 01:45 shared/HITS.pool.root.1
[2025-12-01 01:58:24]  *** Contents of shared directory: ***
[2025-12-01 01:58:24] total 1300632
[2025-12-01 01:58:24] -rw-r--r--. 2 boincer umatlas 407405184 Nov 29 21:59 ATLAS.root_0
[2025-12-01 01:58:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 21:59 start_atlas.sh
[2025-12-01 01:58:24] -rw-r--r--. 2 boincer umatlas    590104 Nov 29 21:59 input.tar.gz
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas 910710109 Dec  1 01:45 HITS.pool.root.1
[2025-12-01 01:58:24] -rw-------. 1 boincer umatlas  13107200 Dec  1 01:48 result.tar.gz
01:58:26 (1106453): run_atlas exited; CPU time 256861.000295
01:58:26 (1106453): called boinc_finish(0)

</stderr_txt>
]]>

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