Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:52:42 (991): wrapper (7.7.26015): starting
00:52:42 (991): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 00:52:42] Arguments: --nthreads 8
[2025-12-02 00:52:42] Threads: 8
[2025-12-02 00:52:42] Checking for CVMFS
[2025-12-02 00:52:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 00:52:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 00:52:44] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 00:52:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 00:52:45] 2.11.2.0 31287 198041 141056 153537 2 85 17569890 25165824 2504 130560 11 68766339 99.881 36489142 2141 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 00:52:45] CVMFS is ok
[2025-12-02 00:52:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 00:52:45] Checking for apptainer binary...
[2025-12-02 00:52:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 00:52:45] Running /usr/bin/apptainer --version
[2025-12-02 00:52:46] apptainer version 1.3.2-1.el7
[2025-12-02 00:52:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 00:52:55] cg-vwn426.simple-grid.lan
[2025-12-02 00:52:55] apptainer works
[2025-12-02 00:52:55] Set ATHENA_PROC_NUMBER=8
[2025-12-02 00:52:55] Set ATHENA_CORE_NUMBER=8
[2025-12-02 00:52:55] Starting ATLAS job with PandaID=6901020754
[2025-12-02 00:52:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 00:53:45]  *** The last 200 lines of the pilot log: ***
[2025-12-03 00:53:45] 2025-12-02 23:52:58,268 | INFO     | time since job start (86172s) is within the limit (172800.0s)
[2025-12-03 00:53:45] 2025-12-02 23:52:58,370 | INFO     | monitor loop #5804: job 0:6901020754 is in state 'finished'
[2025-12-03 00:53:45] 2025-12-02 23:52:58,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:53:45] 2025-12-02 23:53:00,274 | INFO     | time since job start (86174s) is within the limit (172800.0s)
[2025-12-03 00:53:45] 2025-12-02 23:53:00,882 | INFO     | monitor loop #5805: job 0:6901020754 is in state 'finished'
[2025-12-03 00:53:45] 2025-12-02 23:53:00,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:53:45] 2025-12-02 23:53:02,281 | INFO     | time since job start (86176s) is within the limit (172800.0s)
[2025-12-03 00:53:45] 2025-12-02 23:53:03,387 | INFO     | monitor loop #5806: job 0:6901020754 is in state 'finished'
[2025-12-03 00:53:45] 2025-12-02 23:53:03,388 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:53:45] 2025-12-02 23:53:04,288 | INFO     | time since job start (86178s) is within the limit (172800.0s)
[2025-12-03 00:53:45] 2025-12-02 23:53:05,899 | INFO     | monitor loop #5807: job 0:6901020754 is in state 'finished'
[2025-12-03 00:53:45] 2025-12-02 23:53:05,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:53:45] 2025-12-02 23:53:06,294 | INFO     | time since job start (86180s) is within the limit (172800.0s)
[2025-12-03 00:53:45] 2025-12-02 23:53:08,302 | INFO     | time since job start (86182s) is within the limit (172800.0s)
[2025-12-03 00:53:45] 2025-12-02 23:53:08,406 | INFO     | monitor loop #5808: job 0:6901020754 is in state 'finished'
[2025-12-03 00:53:45] 2025-12-02 23:53:08,407 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:53:45] 2025-12-02 23:53:09,311 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 00:53:45] 2025-12-02 23:53:09,312 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 00:53:45] 2025-12-02 23:53:09,314 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6901020754/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 00:53:45] 2025-12-02 23:53:09,315 | INFO     | extracted standard info from prmon json
[2025-12-03 00:53:45] 2025-12-02 23:53:09,315 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 00:53:45] 2025-12-02 23:53:09,315 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 00:53:45] 2025-12-02 23:53:09,341 | INFO     | fitting pss+swap vs Time
[2025-12-03 00:53:45] 2025-12-02 23:53:09,343 | INFO     | sum of square deviations: 854519676150.0728
[2025-12-03 00:53:45] 2025-12-02 23:53:09,409 | INFO     | sum of deviations: 3216125631958.4214
[2025-12-03 00:53:45] 2025-12-02 23:53:09,410 | INFO     | mean x: 1764676653.5941513
[2025-12-03 00:53:45] 2025-12-02 23:53:09,410 | INFO     | mean y: 2844805.6597717544
[2025-12-03 00:53:45] 2025-12-02 23:53:09,410 | INFO     | intersect: -6638806611.090088
[2025-12-03 00:53:45] 2025-12-02 23:53:09,412 | INFO     | chi2: 20.50312388390107
[2025-12-03 00:53:45] 2025-12-02 23:53:09,414 | INFO     | sum of square deviations: 845410196461.566
[2025-12-03 00:53:45] 2025-12-02 23:53:09,485 | INFO     | sum of deviations: 3683666526295.999
[2025-12-03 00:53:45] 2025-12-02 23:53:09,485 | INFO     | mean x: 1764676501.0980673
[2025-12-03 00:53:45] 2025-12-02 23:53:09,485 | INFO     | mean y: 2852631.9634931996
[2025-12-03 00:53:45] 2025-12-02 23:53:09,485 | INFO     | intersect: -7686290205.494133
[2025-12-03 00:53:45] 2025-12-02 23:53:09,487 | INFO     | chi2: 17.281753345023706
[2025-12-03 00:53:45] 2025-12-02 23:53:09,487 | INFO     | current chi2=17.281753345023706 (change=15.711608421811096 %)
[2025-12-03 00:53:45] 2025-12-02 23:53:09,487 | INFO     | right removable region: 1396
[2025-12-03 00:53:45] 2025-12-02 23:53:09,489 | INFO     | sum of square deviations: 845409260721.5662
[2025-12-03 00:53:45] 2025-12-02 23:53:09,555 | INFO     | sum of deviations: 2638406562723.5205
[2025-12-03 00:53:45] 2025-12-02 23:53:09,555 | INFO     | mean x: 1764676806.0980673
[2025-12-03 00:53:45] 2025-12-02 23:53:09,555 | INFO     | mean y: 2854475.638511095
[2025-12-03 00:53:45] 2025-12-02 23:53:09,555 | INFO     | intersect: -5504460244.715073
[2025-12-03 00:53:45] 2025-12-02 23:53:09,557 | INFO     | chi2: 15.974441732068087
[2025-12-03 00:53:45] 2025-12-02 23:53:09,557 | INFO     | current chi2=15.974441732068087 (change=22.08776661291539 %)
[2025-12-03 00:53:45] 2025-12-02 23:53:09,557 | INFO     | left removable region: 10
[2025-12-03 00:53:45] 2025-12-02 23:53:09,559 | INFO     | sum of square deviations: 825595864646.6964
[2025-12-03 00:53:45] 2025-12-02 23:53:09,614 | INFO     | sum of deviations: 2688303175246.1465
[2025-12-03 00:53:45] 2025-12-02 23:53:09,614 | INFO     | mean x: 1764676775.6067822
[2025-12-03 00:53:45] 2025-12-02 23:53:09,614 | INFO     | mean y: 2872967.06998557
[2025-12-03 00:53:45] 2025-12-02 23:53:09,614 | INFO     | intersect: -5743263105.422305
[2025-12-03 00:53:45] 2025-12-02 23:53:09,616 | INFO     | chi2: 8.355696174165281
[2025-12-03 00:53:45] 2025-12-02 23:53:09,616 | INFO     | current memory leak: 3.26 B/s (using 1386 data points, chi2=8.36)
[2025-12-03 00:53:45] 2025-12-02 23:53:09,618 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-12-03 00:53:45] 2025-12-02 23:53:09,618 | INFO     | ..............................
[2025-12-03 00:53:45] 2025-12-02 23:53:09,618 | INFO     | . Timing measurements:
[2025-12-03 00:53:45] 2025-12-02 23:53:09,618 | INFO     | . get job = 0 s
[2025-12-03 00:53:45] 2025-12-02 23:53:09,618 | INFO     | . initial setup = 12 s
[2025-12-03 00:53:45] 2025-12-02 23:53:09,618 | INFO     | . payload setup = 176 s
[2025-12-03 00:53:45] 2025-12-02 23:53:09,619 | INFO     | . stage-in = 0 s
[2025-12-03 00:53:45] 2025-12-02 23:53:09,619 | INFO     | . payload execution = 85635 s
[2025-12-03 00:53:45] 2025-12-02 23:53:09,619 | INFO     | . stage-out = 98 s
[2025-12-03 00:53:45] 2025-12-02 23:53:09,619 | INFO     | . log creation = 2 s
[2025-12-03 00:53:45] 2025-12-02 23:53:09,619 | INFO     | ..............................
[2025-12-03 00:53:45] 2025-12-02 23:53:09,740 | INFO     | 
[2025-12-03 00:53:45] 2025-12-02 23:53:09,741 | INFO     | job summary report
[2025-12-03 00:53:45] 2025-12-02 23:53:09,741 | INFO     | --------------------------------------------------
[2025-12-03 00:53:45] 2025-12-02 23:53:09,741 | INFO     | PanDA job id: 6901020754
[2025-12-03 00:53:45] 2025-12-02 23:53:09,741 | INFO     | task id: 47556185
[2025-12-03 00:53:45] 2025-12-02 23:53:09,741 | INFO     | errors: (none)
[2025-12-03 00:53:45] 2025-12-02 23:53:09,741 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 00:53:45] 2025-12-02 23:53:09,741 | INFO     | pilot state: finished 
[2025-12-03 00:53:45] 2025-12-02 23:53:09,741 | INFO     | transexitcode: 0
[2025-12-03 00:53:45] 2025-12-02 23:53:09,741 | INFO     | exeerrorcode: 0
[2025-12-03 00:53:45] 2025-12-02 23:53:09,742 | INFO     | exeerrordiag: 
[2025-12-03 00:53:45] 2025-12-02 23:53:09,742 | INFO     | exitcode: 0
[2025-12-03 00:53:45] 2025-12-02 23:53:09,742 | INFO     | exitmsg: OK
[2025-12-03 00:53:45] 2025-12-02 23:53:09,742 | INFO     | cpuconsumptiontime: 321529 s
[2025-12-03 00:53:45] 2025-12-02 23:53:09,742 | INFO     | nevents: 1000
[2025-12-03 00:53:45] 2025-12-02 23:53:09,742 | INFO     | neventsw: 0
[2025-12-03 00:53:45] 2025-12-02 23:53:09,742 | INFO     | pid: 11433
[2025-12-03 00:53:45] 2025-12-02 23:53:09,742 | INFO     | pgrp: 11433
[2025-12-03 00:53:45] 2025-12-02 23:53:09,742 | INFO     | corecount: 8
[2025-12-03 00:53:45] 2025-12-02 23:53:09,742 | INFO     | event service: False
[2025-12-03 00:53:45] 2025-12-02 23:53:09,743 | INFO     | sizes: {0: 2284145, 1: 2284344, 2: 2284344, 12: 2284372, 23: 2284400, 34: 2284428, 45: 2284584, 55: 2284612, 66: 2284640, 77: 2284668, 88: 2284724, 96: 2285294, 98
[2025-12-03 00:53:45] 2025-12-02 23:53:09,743 | INFO     | --------------------------------------------------
[2025-12-03 00:53:45] 2025-12-02 23:53:09,743 | INFO     | 
[2025-12-03 00:53:45] 2025-12-02 23:53:09,743 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-12-03 00:53:45] 2025-12-02 23:53:09,812 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,812 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,812 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,812 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,812 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,812 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 00:53:45] 2025-12-02 23:53:09,813 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,814 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 00:53:45] 2025-12-02 23:53:09,814 | INFO     | job 6901020754 has completed (purged errors)
[2025-12-03 00:53:45] 2025-12-02 23:53:09,814 | INFO     | overall cleanup function is called
[2025-12-03 00:53:45] 2025-12-02 23:53:10,830 | INFO     | --- collectZombieJob: --- 10, [11433]
[2025-12-03 00:53:45] 2025-12-02 23:53:10,831 | INFO     | zombie collector waiting for pid 11433
[2025-12-03 00:53:45] 2025-12-02 23:53:10,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 00:53:45] 2025-12-02 23:53:10,831 | INFO     | collected zombie processes
[2025-12-03 00:53:45] 2025-12-02 23:53:10,831 | INFO     | will attempt to kill all subprocesses of pid=11433
[2025-12-03 00:53:45] 2025-12-02 23:53:10,930 | INFO     | process IDs to be killed: [11433] (in reverse order)
[2025-12-03 00:53:45] 2025-12-02 23:53:10,985 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 00:53:45] 2025-12-02 23:53:10,985 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 00:53:45] 2025-12-02 23:53:10,988 | INFO     | did not find any defunct processes belonging to 11433
[2025-12-03 00:53:45] 2025-12-02 23:53:10,991 | INFO     | did not find any defunct processes belonging to 11433
[2025-12-03 00:53:45] 2025-12-02 23:53:10,993 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 00:53:45] 2025-12-02 23:53:10,993 | INFO     | ready for new job
[2025-12-03 00:53:45] 2025-12-02 23:53:10,993 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 00:53:45] 2025-12-02 23:53:10,999 | INFO     | ***************************************
[2025-12-03 00:53:45] 2025-12-02 23:53:10,999 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 00:53:45] 2025-12-02 23:53:10,999 | INFO     | ***************************************
[2025-12-03 00:53:45] 2025-12-02 23:53:10,999 | INFO     | 
[2025-12-03 00:53:45] 2025-12-02 23:53:11,000 | INFO     | pilot is running in a VM
[2025-12-03 00:53:45] 2025-12-02 23:53:11,000 | INFO     | architecture information:
[2025-12-03 00:53:45] 2025-12-02 23:53:11,000 | INFO     | executing command: cat /etc/os-release
[2025-12-03 00:53:45] 2025-12-02 23:53:11,021 | INFO     | cat /etc/os-release:
[2025-12-03 00:53:45] NAME="CentOS Linux"
[2025-12-03 00:53:45] VERSION="7 (Core)"
[2025-12-03 00:53:45] ID="centos"
[2025-12-03 00:53:45] ID_LIKE="rhel fedora"
[2025-12-03 00:53:45] VERSION_ID="7"
[2025-12-03 00:53:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 00:53:45] ANSI_COLOR="0;31"
[2025-12-03 00:53:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 00:53:45] HOME_URL="https://www.centos.org/"
[2025-12-03 00:53:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 00:53:45] 
[2025-12-03 00:53:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 00:53:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 00:53:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 00:53:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 00:53:45] 
[2025-12-03 00:53:45] 2025-12-02 23:53:11,022 | INFO     | ***************************************
[2025-12-03 00:53:45] 2025-12-02 23:53:11,526 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-12-03 00:53:45] 2025-12-02 23:53:11,732 | INFO     | sufficient remaining disk space (490811162624 B)
[2025-12-03 00:53:45] 2025-12-02 23:53:11,732 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 00:53:45] 2025-12-02 23:53:11,733 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 00:53:45] 2025-12-02 23:53:11,733 | INFO     | update_server=False
[2025-12-03 00:53:45] 2025-12-02 23:53:11,733 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 00:53:45] 2025-12-02 23:53:11,734 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 00:53:45] 2025-12-02 23:53:11,734 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 00:53:45] 2025-12-02 23:53:11,811 | INFO     | all job control threads have been joined
[2025-12-03 00:53:45] 2025-12-02 23:53:11,859 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 00:53:45] 2025-12-02 23:53:11,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 00:53:45] 2025-12-02 23:53:11,933 | INFO     | aborting loop
[2025-12-03 00:53:45] 2025-12-02 23:53:12,255 | INFO     | all payload control threads have been joined
[2025-12-03 00:53:45] 2025-12-02 23:53:12,523 | INFO     | all data control threads have been joined
[2025-12-03 00:53:45] 2025-12-02 23:53:12,739 | INFO     | [job] retrieve thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:12,740 | INFO     | [job] queue monitor thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:12,818 | INFO     | [job] control thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:12,939 | INFO     | [job] job monitor thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:12,964 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:13,038 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:13,124 | INFO     | [job] validate thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:13,154 | INFO     | [payload] validate_post thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:13,261 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:13,262 | INFO     | [payload] control thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:13,419 | INFO     | [data] copytool_in thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:13,475 | INFO     | [payload] failed_post thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:13,530 | INFO     | [data] control thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:13,698 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:13,867 | INFO     | [data] copytool_out thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:15,743 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 00:53:45] 2025-12-02 23:53:16,317 | INFO     | [monitor] cgroup control has ended
[2025-12-03 00:53:45] 2025-12-02 23:53:17,389 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140553063466816)>', '<ExcThread(monitor, started 140552762795776)>']
[2025-12-03 00:53:45] 2025-12-02 23:53:22,413 | INFO     | all workflow threads have been joined
[2025-12-03 00:53:45] 2025-12-02 23:53:22,414 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 00:53:45] 2025-12-02 23:53:22,414 | INFO     | traces error code: 0
[2025-12-03 00:53:45] 2025-12-02 23:53:22,414 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 00:53:45] 2025-12-02 23:53:41,434 | INFO     | PID=4786 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 00:53:45] 2025-12-02 23:53:41,434 | INFO     | .. there are 9 such processes running
[2025-12-03 00:53:45] 2025-12-02 23:53:41,436 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 00:53:45] 2025-12-02 23:53:41,436 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 00:53:45] 2025-12-02 23:53:41,436 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 00:53:45] 2025-12-02 23:53:41,436 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 00:53:45] 2025-12-02 23:53:41,436 | INFO     | [monitor] control thread has ended
[2025-12-03 00:53:45] 2025-12-02 23:53:41,603 [wrapper] ==== pilot stdout END ====
[2025-12-03 00:53:45] 2025-12-02 23:53:41,614 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 00:53:45] 2025-12-02 23:53:41,621 [wrapper] pilotpid: 4786
[2025-12-03 00:53:45] 2025-12-02 23:53:41,626 [wrapper] Pilot exit status: 0
[2025-12-03 00:53:45] 2025-12-02 23:53:41,781 [wrapper] pandaids: 6901020754
[2025-12-03 00:53:45] 2025-12-02 23:53:42,438 [wrapper] cleanup supervisor_pilot  3112 4787
[2025-12-03 00:53:45] 2025-12-02 23:53:42,546 [wrapper] Test setup, not cleaning
[2025-12-03 00:53:45] 2025-12-02 23:53:42,633 [wrapper] apfmon messages muted
[2025-12-03 00:53:45] 2025-12-02 23:53:42,731 [wrapper] ==== wrapper stdout END ====
[2025-12-03 00:53:45] 2025-12-02 23:53:42,833 [wrapper] ==== wrapper stderr END ====
[2025-12-03 00:53:45]  *** Error codes and diagnostics ***
[2025-12-03 00:53:45]     "exeErrorCode": 0,
[2025-12-03 00:53:45]     "exeErrorDiag": "",
[2025-12-03 00:53:45]     "pilotErrorCode": 0,
[2025-12-03 00:53:45]     "pilotErrorDiag": "",
[2025-12-03 00:53:45]  *** Listing of results directory ***
[2025-12-03 00:53:45] total 1340052
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-03 00:53:45] -rwx------. 1 boinc boinc     36292 Nov 28 02:00 runpilot2-wrapper.sh
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc      5112 Nov 28 02:04 queuedata.json
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc       100 Dec  2 00:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 00:53:45] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 00:52 run_atlas
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc       105 Dec  2 00:52 job.xml
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc      6391 Dec  2 00:52 init_data.xml
[2025-12-03 00:53:45] -rw-r--r--. 2 boinc boinc 410211487 Dec  2 00:52 EVNT.47483658._004542.pool.root.1
[2025-12-03 00:53:45] -rw-r--r--. 2 boinc boinc     15847 Dec  2 00:52 start_atlas.sh
[2025-12-03 00:53:45] drwxrwx--x. 2 boinc boinc        68 Dec  2 00:52 shared
[2025-12-03 00:53:45] -rw-r--r--. 2 boinc boinc    590101 Dec  2 00:52 input.tar.gz
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc         0 Dec  2 00:52 boinc_lockfile
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc      2787 Dec  2 00:52 pandaJob.out
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc    992016 Dec  2 00:56 agis_schedconf.cvmfs.json
[2025-12-03 00:53:45] drwx------. 5 boinc boinc      4096 Dec  2 00:56 pilot3
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc       533 Dec  3 00:29 boinc_task_state.xml
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc 930159712 Dec  3 00:49 HITS.47556185._003052.pool.root.1
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc      1032 Dec  3 00:50 memory_monitor_summary.json
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc   1516240 Dec  3 00:50 agis_ddmendpoints.agis.ALL.json
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc   2480910 Dec  3 00:51 log.47556185._003052.job.log.tgz.1
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc      8629 Dec  3 00:53 heartbeat.json
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc        29 Dec  3 00:53 wrapper_checkpoint.txt
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc      8192 Dec  3 00:53 boinc_mmap_file
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc        95 Dec  3 00:53 pilot_heartbeat.json
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc       819 Dec  3 00:53 pilotlog.txt
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc  11489413 Dec  3 00:53 log.47556185._003052.job.log.1
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc       353 Dec  3 00:53 output.list
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc       620 Dec  3 00:53 runtime_log
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc  13987840 Dec  3 00:53 result.tar.gz
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc      8817 Dec  3 00:53 runtime_log.err
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc       662 Dec  3 00:53 pgqMDmB21i8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmIOKDmoCilRo.diag
[2025-12-03 00:53:45] -rw-r--r--. 1 boinc boinc     21436 Dec  3 00:53 stderr.txt
[2025-12-03 00:53:45] HITS file was successfully produced:
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc 930159712 Dec  3 00:49 shared/HITS.pool.root.1
[2025-12-03 00:53:45]  *** Contents of shared directory: ***
[2025-12-03 00:53:45] total 1323216
[2025-12-03 00:53:45] -rw-r--r--. 2 boinc boinc 410211487 Dec  2 00:52 ATLAS.root_0
[2025-12-03 00:53:45] -rw-r--r--. 2 boinc boinc     15847 Dec  2 00:52 start_atlas.sh
[2025-12-03 00:53:45] -rw-r--r--. 2 boinc boinc    590101 Dec  2 00:52 input.tar.gz
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc 930159712 Dec  3 00:49 HITS.pool.root.1
[2025-12-03 00:53:45] -rw-------. 1 boinc boinc  13987840 Dec  3 00:53 result.tar.gz
00:53:46 (991): run_atlas exited; CPU time 322170.193575
00:53:46 (991): called boinc_finish(0)

</stderr_txt>
]]>

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