Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:29:45 (3842386): wrapper (7.7.26015): starting
21:29:45 (3842386): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 21:29:46] Arguments: --nthreads 8
[2025-11-29 21:29:46] Threads: 8
[2025-11-29 21:29:46] Checking for CVMFS
[2025-11-29 21:29:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 21:29:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 21:29:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 21:29:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 21:29:46] 2.13.3.0 12846 35165 343780 153464 3 207 17016372 32935936 28180 16776704 0 196532927 99.499 245643866 37349 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 21:29:46] CVMFS is ok
[2025-11-29 21:29:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 21:29:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 21:29:46] Further information can be found at the LHC@home message board.
[2025-11-29 21:29:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 21:29:46] Checking for apptainer binary...
[2025-11-29 21:29:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 21:29:46] Running /usr/bin/apptainer --version
[2025-11-29 21:29:46] apptainer version 1.4.4-1.el9
[2025-11-29 21:29:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 21:29:46] c7-16-9.aglt2.org
[2025-11-29 21:29:46] apptainer works
[2025-11-29 21:29:46] Set ATHENA_PROC_NUMBER=8
[2025-11-29 21:29:46] Set ATHENA_CORE_NUMBER=8
[2025-11-29 21:29:46] Starting ATLAS job with PandaID=6893850447
[2025-11-29 21:29:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 00:59:08]  *** The last 200 lines of the pilot log: ***
[2025-12-01 00:59:08] 2025-12-01 05:58:03,471 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 00:59:08] 2025-12-01 05:58:03,950 | INFO     | time since job start (98882s) is within the limit (172800.0s)
[2025-12-01 00:59:08] 2025-12-01 05:58:05,956 | INFO     | time since job start (98884s) is within the limit (172800.0s)
[2025-12-01 00:59:08] 2025-12-01 05:58:05,976 | INFO     | monitor loop #5217: job 0:6893850447 is in state 'finished'
[2025-12-01 00:59:08] 2025-12-01 05:58:05,976 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 00:59:08] 2025-12-01 05:58:07,964 | INFO     | time since job start (98886s) is within the limit (172800.0s)
[2025-12-01 00:59:08] 2025-12-01 05:58:08,480 | INFO     | monitor loop #5218: job 0:6893850447 is in state 'finished'
[2025-12-01 00:59:08] 2025-12-01 05:58:08,480 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 00:59:08] 2025-12-01 05:58:09,971 | INFO     | time since job start (98888s) is within the limit (172800.0s)
[2025-12-01 00:59:08] 2025-12-01 05:58:10,988 | INFO     | monitor loop #5219: job 0:6893850447 is in state 'finished'
[2025-12-01 00:59:08] 2025-12-01 05:58:10,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 00:59:08] 2025-12-01 05:58:11,917 | INFO     | PID=3846132 has CPU usage=17.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-01 00:59:08] 2025-12-01 05:58:11,917 | INFO     | .. there are 60 such processes running
[2025-12-01 00:59:08] 2025-12-01 05:58:12,918 | INFO     | time since job start (98891s) is within the limit (172800.0s)
[2025-12-01 00:59:08] 2025-12-01 05:58:13,493 | INFO     | monitor loop #5220: job 0:6893850447 is in state 'finished'
[2025-12-01 00:59:08] 2025-12-01 05:58:13,493 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 00:59:08] 2025-12-01 05:58:13,958 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 00:59:08] 2025-12-01 05:58:13,972 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3067.4207187499997
[2025-12-01 00:59:08] 2025-12-01 05:58:13,989 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6893850447/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 00:59:08] 2025-12-01 05:58:13,989 | INFO     | extracted standard info from prmon json
[2025-12-01 00:59:08] 2025-12-01 05:58:13,989 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 00:59:08] 2025-12-01 05:58:13,989 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 00:59:08] 2025-12-01 05:58:14,012 | INFO     | fitting pss+swap vs Time
[2025-12-01 00:59:08] 2025-12-01 05:58:14,014 | INFO     | sum of square deviations: 1318355018701.3105
[2025-12-01 00:59:08] 2025-12-01 05:58:14,069 | INFO     | sum of deviations: 3543587944327.7876
[2025-12-01 00:59:08] 2025-12-01 05:58:14,069 | INFO     | mean x: 1764519263.0407407
[2025-12-01 00:59:08] 2025-12-01 05:58:14,069 | INFO     | mean y: 2880277.3820987656
[2025-12-01 00:59:08] 2025-12-01 05:58:14,069 | INFO     | intersect: -4739946274.910909
[2025-12-01 00:59:08] 2025-12-01 05:58:14,071 | INFO     | chi2: 31.18465146267619
[2025-12-01 00:59:08] 2025-12-01 05:58:14,073 | INFO     | sum of square deviations: 1306188653642.336
[2025-12-01 00:59:08] 2025-12-01 05:58:14,125 | INFO     | sum of deviations: 4041582191615.5176
[2025-12-01 00:59:08] 2025-12-01 05:58:14,126 | INFO     | mean x: 1764519110.5578947
[2025-12-01 00:59:08] 2025-12-01 05:58:14,126 | INFO     | mean y: 2886518.5399380806
[2025-12-01 00:59:08] 2025-12-01 05:58:14,126 | INFO     | intersect: -5456852389.85575
[2025-12-01 00:59:08] 2025-12-01 05:58:14,127 | INFO     | chi2: 28.445366996515176
[2025-12-01 00:59:08] 2025-12-01 05:58:14,127 | INFO     | current chi2=28.445366996515176 (change=8.784079146882775 %)
[2025-12-01 00:59:08] 2025-12-01 05:58:14,127 | INFO     | right removable region: 1614
[2025-12-01 00:59:08] 2025-12-01 05:58:14,129 | INFO     | sum of square deviations: 1306183178282.3367
[2025-12-01 00:59:08] 2025-12-01 05:58:14,178 | INFO     | sum of deviations: 2857755236913.227
[2025-12-01 00:59:08] 2025-12-01 05:58:14,178 | INFO     | mean x: 1764519415.5578947
[2025-12-01 00:59:08] 2025-12-01 05:58:14,178 | INFO     | mean y: 2888870.6445820434
[2025-12-01 00:59:08] 2025-12-01 05:58:14,178 | INFO     | intersect: -3857645152.6742134
[2025-12-01 00:59:08] 2025-12-01 05:58:14,180 | INFO     | chi2: 26.504254253215308
[2025-12-01 00:59:08] 2025-12-01 05:58:14,180 | INFO     | current chi2=26.504254253215308 (change=15.008656470195552 %)
[2025-12-01 00:59:08] 2025-12-01 05:58:14,180 | INFO     | left removable region: 10
[2025-12-01 00:59:08] 2025-12-01 05:58:14,181 | INFO     | sum of square deviations: 1279675786601.216
[2025-12-01 00:59:08] 2025-12-01 05:58:14,229 | INFO     | sum of deviations: 2845422489690.224
[2025-12-01 00:59:08] 2025-12-01 05:58:14,229 | INFO     | mean x: 1764519385.09601
[2025-12-01 00:59:08] 2025-12-01 05:58:14,229 | INFO     | mean y: 2904131.7387780547
[2025-12-01 00:59:08] 2025-12-01 05:58:14,229 | INFO     | intersect: -3920592111.9321814
[2025-12-01 00:59:08] 2025-12-01 05:58:14,230 | INFO     | chi2: 19.574287821571097
[2025-12-01 00:59:08] 2025-12-01 05:58:14,230 | INFO     | current memory leak: 2.22 B/s (using 1604 data points, chi2=19.57)
[2025-12-01 00:59:08] 2025-12-01 05:58:14,232 | INFO     | could have reported an average CPU frequency of 3072 MHz (57 samples)
[2025-12-01 00:59:08] 2025-12-01 05:58:14,232 | INFO     | ..............................
[2025-12-01 00:59:08] 2025-12-01 05:58:14,232 | INFO     | . Timing measurements:
[2025-12-01 00:59:08] 2025-12-01 05:58:14,232 | INFO     | . get job = 0 s
[2025-12-01 00:59:08] 2025-12-01 05:58:14,232 | INFO     | . initial setup = 2 s
[2025-12-01 00:59:08] 2025-12-01 05:58:14,232 | INFO     | . payload setup = 32 s
[2025-12-01 00:59:08] 2025-12-01 05:58:14,232 | INFO     | . stage-in = 0 s
[2025-12-01 00:59:08] 2025-12-01 05:58:14,232 | INFO     | . payload execution = 98807 s
[2025-12-01 00:59:08] 2025-12-01 05:58:14,232 | INFO     | . stage-out = 4 s
[2025-12-01 00:59:08] 2025-12-01 05:58:14,232 | INFO     | . log creation = 1 s
[2025-12-01 00:59:08] 2025-12-01 05:58:14,232 | INFO     | ..............................
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | 
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | job summary report
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | --------------------------------------------------
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | PanDA job id: 6893850447
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | task id: 47523449
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | errors: (none)
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | pilot state: finished 
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | transexitcode: 0
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | exeerrorcode: 0
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | exeerrordiag: 
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | exitcode: 0
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | exitmsg: OK
[2025-12-01 00:59:08] 2025-12-01 05:58:14,708 | INFO     | cpuconsumptiontime: 202296 s
[2025-12-01 00:59:08] 2025-12-01 05:58:14,709 | INFO     | nevents: 1000
[2025-12-01 00:59:08] 2025-12-01 05:58:14,709 | INFO     | neventsw: 0
[2025-12-01 00:59:08] 2025-12-01 05:58:14,709 | INFO     | pid: 3863567
[2025-12-01 00:59:08] 2025-12-01 05:58:14,709 | INFO     | pgrp: 3863567
[2025-12-01 00:59:08] 2025-12-01 05:58:14,709 | INFO     | corecount: 8
[2025-12-01 00:59:08] 2025-12-01 05:58:14,709 | INFO     | event service: False
[2025-12-01 00:59:08] 2025-12-01 05:58:14,709 | INFO     | sizes: {0: 2283480, 1: 2284336, 8: 2284598, 12: 2284626, 98844: 2354226, 98849: 2363220, 98853: 2363404, 98866: 2363650}
[2025-12-01 00:59:08] 2025-12-01 05:58:14,709 | INFO     | --------------------------------------------------
[2025-12-01 00:59:08] 2025-12-01 05:58:14,709 | INFO     | 
[2025-12-01 00:59:08] 2025-12-01 05:58:14,709 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-01 00:59:08] 2025-12-01 05:58:14,869 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,869 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,870 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,871 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,871 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 00:59:08] 2025-12-01 05:58:14,871 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,871 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 00:59:08] 2025-12-01 05:58:14,871 | INFO     | job 6893850447 has completed (purged errors)
[2025-12-01 00:59:08] 2025-12-01 05:58:14,871 | INFO     | overall cleanup function is called
[2025-12-01 00:59:08] 2025-12-01 05:58:15,910 | INFO     | --- collectZombieJob: --- 10, [3863567]
[2025-12-01 00:59:08] 2025-12-01 05:58:15,910 | INFO     | zombie collector waiting for pid 3863567
[2025-12-01 00:59:08] 2025-12-01 05:58:15,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 00:59:08] 2025-12-01 05:58:15,910 | INFO     | collected zombie processes
[2025-12-01 00:59:08] 2025-12-01 05:58:15,910 | INFO     | will attempt to kill all subprocesses of pid=3863567
[2025-12-01 00:59:08] 2025-12-01 05:58:16,839 | INFO     | process IDs to be killed: [3863567] (in reverse order)
[2025-12-01 00:59:08] 2025-12-01 05:58:17,083 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 00:59:08] 2025-12-01 05:58:17,083 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 00:59:08] 2025-12-01 05:58:17,111 | INFO     | did not find any defunct processes belonging to 3863567
[2025-12-01 00:59:08] 2025-12-01 05:58:17,139 | INFO     | did not find any defunct processes belonging to 3863567
[2025-12-01 00:59:08] 2025-12-01 05:58:17,145 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 00:59:08] 2025-12-01 05:58:17,146 | INFO     | ready for new job
[2025-12-01 00:59:08] 2025-12-01 05:58:17,146 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 00:59:08] 2025-12-01 05:58:17,166 | INFO     | ***************************************
[2025-12-01 00:59:08] 2025-12-01 05:58:17,166 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 00:59:08] 2025-12-01 05:58:17,166 | INFO     | ***************************************
[2025-12-01 00:59:08] 2025-12-01 05:58:17,166 | INFO     | 
[2025-12-01 00:59:08] 2025-12-01 05:58:17,171 | INFO     | architecture information:
[2025-12-01 00:59:08] 2025-12-01 05:58:17,172 | INFO     | executing command: cat /etc/os-release
[2025-12-01 00:59:08] 2025-12-01 05:58:17,266 | INFO     | cat /etc/os-release:
[2025-12-01 00:59:08] NAME="CentOS Linux"
[2025-12-01 00:59:08] VERSION="7 (Core)"
[2025-12-01 00:59:08] ID="centos"
[2025-12-01 00:59:08] ID_LIKE="rhel fedora"
[2025-12-01 00:59:08] VERSION_ID="7"
[2025-12-01 00:59:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 00:59:08] ANSI_COLOR="0;31"
[2025-12-01 00:59:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 00:59:08] HOME_URL="https://www.centos.org/"
[2025-12-01 00:59:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 00:59:08] 
[2025-12-01 00:59:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 00:59:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 00:59:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 00:59:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 00:59:08] 
[2025-12-01 00:59:08] 2025-12-01 05:58:17,266 | INFO     | ***************************************
[2025-12-01 00:59:08] 2025-12-01 05:58:17,770 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-01 00:59:08] 2025-12-01 05:58:17,811 | INFO     | sufficient remaining disk space (66920120320 B)
[2025-12-01 00:59:08] 2025-12-01 05:58:17,813 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 00:59:08] 2025-12-01 05:58:17,813 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 00:59:08] 2025-12-01 05:58:17,813 | INFO     | update_server=False
[2025-12-01 00:59:08] 2025-12-01 05:58:17,813 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 00:59:08] 2025-12-01 05:58:17,814 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 00:59:08] 2025-12-01 05:58:17,814 | INFO     | aborting loop
[2025-12-01 00:59:08] 2025-12-01 05:58:18,056 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 00:59:08] 2025-12-01 05:58:18,196 | INFO     | all payload control threads have been joined
[2025-12-01 00:59:08] 2025-12-01 05:58:18,525 | INFO     | all data control threads have been joined
[2025-12-01 00:59:08] 2025-12-01 05:58:18,819 | INFO     | [job] retrieve thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:18,819 | INFO     | [job] job monitor thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:18,928 | INFO     | [data] copytool_in thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:19,202 | INFO     | [payload] control thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:19,234 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:19,340 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 00:59:08] 2025-12-01 05:58:19,350 | INFO     | [payload] validate_post thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:19,408 | INFO     | all job control threads have been joined
[2025-12-01 00:59:08] 2025-12-01 05:58:19,531 | INFO     | [data] control thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:19,613 | INFO     | [payload] failed_post thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:19,682 | INFO     | [job] validate thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:20,064 | INFO     | [data] copytool_out thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:20,103 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:20,235 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:20,259 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 00:59:08] 2025-12-01 05:58:20,345 | INFO     | [job] queue monitor thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:20,414 | INFO     | [job] control thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:24,282 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:28,074 | INFO     | job.realtimelogging is not enabled
[2025-12-01 00:59:08] 2025-12-01 05:58:29,079 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 00:59:08] 2025-12-01 05:58:46,954 | INFO     | PID=3846132 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 00:59:08] 2025-12-01 05:58:46,955 | INFO     | .. there are 60 such processes running
[2025-12-01 00:59:08] 2025-12-01 05:58:46,955 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 00:59:08] 2025-12-01 05:58:46,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 00:59:08] 2025-12-01 05:58:46,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 00:59:08] 2025-12-01 05:59:02,212 | INFO     | [monitor] cgroup control has ended
[2025-12-01 00:59:08] 2025-12-01 05:59:02,458 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140129734272832)>', '<ExcThread(monitor, started 140129230362368)>']
[2025-12-01 00:59:08] 2025-12-01 05:59:03,063 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 00:59:08] 2025-12-01 05:59:03,063 | INFO     | [monitor] control thread has ended
[2025-12-01 00:59:08] 2025-12-01 05:59:07,483 | INFO     | all workflow threads have been joined
[2025-12-01 00:59:08] 2025-12-01 05:59:07,483 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 00:59:08] 2025-12-01 05:59:07,483 | INFO     | traces error code: 0
[2025-12-01 00:59:08] 2025-12-01 05:59:07,483 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 00:59:08] 2025-12-01 05:59:07,701 [wrapper] ==== pilot stdout END ====
[2025-12-01 00:59:08] 2025-12-01 05:59:07,706 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 00:59:08] 2025-12-01 05:59:07,716 [wrapper] pilotpid: 3846132
[2025-12-01 00:59:08] 2025-12-01 05:59:07,728 [wrapper] Pilot exit status: 0
[2025-12-01 00:59:08] 2025-12-01 05:59:07,815 [wrapper] pandaids: 6893850447
[2025-12-01 00:59:08] 2025-12-01 05:59:08,257 [wrapper] cleanup supervisor_pilot 3038971 3846133
[2025-12-01 00:59:08] 2025-12-01 05:59:08,260 [wrapper] Test setup, not cleaning
[2025-12-01 00:59:08] 2025-12-01 05:59:08,265 [wrapper] apfmon messages muted
[2025-12-01 00:59:08] 2025-12-01 05:59:08,281 [wrapper] ==== wrapper stdout END ====
[2025-12-01 00:59:08] 2025-12-01 05:59:08,287 [wrapper] ==== wrapper stderr END ====
[2025-12-01 00:59:08]  *** Error codes and diagnostics ***
[2025-12-01 00:59:08]     "exeErrorCode": 0,
[2025-12-01 00:59:08]     "exeErrorDiag": "",
[2025-12-01 00:59:08]     "pilotErrorCode": 0,
[2025-12-01 00:59:08]     "pilotErrorDiag": "",
[2025-12-01 00:59:08]  *** Listing of results directory ***
[2025-12-01 00:59:08] total 1324144
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:09 pilot3.tar.gz
[2025-12-01 00:59:08] -rwx------. 1 boincer umatlas     36292 Nov 20 06:23 runpilot2-wrapper.sh
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 06:23 queuedata.json
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas       100 Nov 29 21:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 00:59:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 21:29 run_atlas
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas       105 Nov 29 21:29 job.xml
[2025-12-01 00:59:08] -rw-r--r--. 2 boincer umatlas 408258178 Nov 29 21:29 EVNT.47493127._000336.pool.root.1
[2025-12-01 00:59:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 21:29 start_atlas.sh
[2025-12-01 00:59:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 21:29 shared
[2025-12-01 00:59:08] -rw-r--r--. 2 boincer umatlas    590099 Nov 29 21:29 input.tar.gz
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas         0 Nov 29 21:29 boinc_lockfile
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas      2782 Nov 29 21:29 pandaJob.out
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas        57 Nov 29 21:29 setup.sh.local
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas    991772 Nov 29 21:29 agis_schedconf.cvmfs.json
[2025-12-01 00:59:08] drwx------. 5 boincer umatlas      4096 Nov 29 21:30 pilot3
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas       533 Dec  1 00:22 boinc_task_state.xml
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas 915454946 Dec  1 00:57 HITS.47523449._003351.pool.root.1
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas      1074 Dec  1 00:57 memory_monitor_summary.json
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas   1516240 Dec  1 00:57 agis_ddmendpoints.agis.ALL.json
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas   2549024 Dec  1 00:57 log.47523449._003351.job.log.tgz.1
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas      8632 Dec  1 00:58 heartbeat.json
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas      6947 Dec  1 00:58 init_data.xml
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas        95 Dec  1 00:58 pilot_heartbeat.json
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas      8192 Dec  1 00:59 boinc_mmap_file
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas        29 Dec  1 00:59 wrapper_checkpoint.txt
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas      4896 Dec  1 00:59 pilotlog.txt
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas  11591916 Dec  1 00:59 log.47523449._003351.job.log.1
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas       353 Dec  1 00:59 output.list
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas       620 Dec  1 00:59 runtime_log
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas  14161920 Dec  1 00:59 result.tar.gz
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas       666 Dec  1 00:59 ucONDmtvHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEXGKDmyI5gAo.diag
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas      9338 Dec  1 00:59 runtime_log.err
[2025-12-01 00:59:08] -rw-r--r--. 1 boincer umatlas     21833 Dec  1 00:59 stderr.txt
[2025-12-01 00:59:08] HITS file was successfully produced:
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas 915454946 Dec  1 00:57 shared/HITS.pool.root.1
[2025-12-01 00:59:08]  *** Contents of shared directory: ***
[2025-12-01 00:59:08] total 1307128
[2025-12-01 00:59:08] -rw-r--r--. 2 boincer umatlas 408258178 Nov 29 21:29 ATLAS.root_0
[2025-12-01 00:59:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 21:29 start_atlas.sh
[2025-12-01 00:59:08] -rw-r--r--. 2 boincer umatlas    590099 Nov 29 21:29 input.tar.gz
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas 915454946 Dec  1 00:57 HITS.pool.root.1
[2025-12-01 00:59:08] -rw-------. 1 boincer umatlas  14161920 Dec  1 00:59 result.tar.gz
00:59:10 (3842386): run_atlas exited; CPU time 204484.990378
00:59:10 (3842386): called boinc_finish(0)

</stderr_txt>
]]>

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