Stderr output

<core_client_version>7.16.16</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-30 04:39:21 (66154): vboxwrapper version 26210
2025-11-30 04:39:21 (66154): BOINC client version: 7.16.16
2025-11-30 04:39:21 (66154): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2025-11-30 04:39:21 (66154): Successfully copied 'init_data.xml' to the shared directory.
2025-11-30 04:39:21 (66154): Create VM. (boinc_1741f1ccfa8736e1, slot#0)
2025-11-30 04:39:21 (66154): Setting Memory Size for VM. (4400MB)
2025-11-30 04:39:21 (66154): Setting CPU Count for VM. (4)
2025-11-30 04:39:21 (66154): Setting Chipset Options for VM.
2025-11-30 04:39:21 (66154): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-30 04:39:21 (66154): Setting Boot Options for VM.
2025-11-30 04:39:22 (66154): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-30 04:39:22 (66154): Enabling VM Network Access.
2025-11-30 04:39:22 (66154): Disabling USB Support for VM.
2025-11-30 04:39:22 (66154): Disabling COM Port Support for VM.
2025-11-30 04:39:22 (66154): Disabling LPT Port Support for VM.
2025-11-30 04:39:22 (66154): Disabling Audio Support for VM.
2025-11-30 04:39:22 (66154): Disabling Clipboard Support for VM.
2025-11-30 04:39:22 (66154): Disabling Drag and Drop Support for VM.
2025-11-30 04:39:22 (66154): Adding storage controller(s) to VM.
2025-11-30 04:39:22 (66154): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-30 04:39:23 (66154): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-30 04:39:23 (66154): forwarding host port 44729 to guest port 80
2025-11-30 04:39:23 (66154): Enabling remote desktop for VM.
2025-11-30 04:39:23 (66154): Enabling shared directory for VM.
2025-11-30 04:39:23 (66154): Starting VM using VBoxManage interface. (boinc_1741f1ccfa8736e1, slot#0)
2025-11-30 04:39:24 (66154): Successfully started VM. (PID = '66639')
2025-11-30 04:39:24 (66154): Reporting VM Process ID to BOINC.
2025-11-30 04:39:24 (66154): Guest Log: BIOS: VirtualBox 7.0.12
2025-11-30 04:39:24 (66154): Guest Log: CPUID EDX: 0x178bfbff
2025-11-30 04:39:24 (66154): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-30 04:39:24 (66154): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-30 04:39:24 (66154): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-30 04:39:24 (66154): Detected: Web Application Enabled (http://localhost:44729)
2025-11-30 04:39:24 (66154): Detected: Remote Desktop Enabled (localhost:50663)
2025-11-30 04:39:24 (66154): Preference change detected
2025-11-30 04:39:24 (66154): Setting CPU throttle for VM. (100%)
2025-11-30 04:39:24 (66154): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-30 04:39:26 (66154): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-30 04:39:26 (66154): Guest Log: BIOS: Booting from Hard Disk...
2025-11-30 04:39:29 (66154): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-30 04:39:29 (66154): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-30 04:39:29 (66154): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-30 04:39:35 (66154): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-30 04:39:35 (66154): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-30 04:39:42 (66154): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-30 04:39:42 (66154): Guest Log: 00:00:00.000128 main     Log opened 2025-11-30T10:39:40.174009000Z
2025-11-30 04:39:42 (66154): Guest Log: 00:00:00.000201 main     OS Product: Linux
2025-11-30 04:39:42 (66154): Guest Log: 00:00:00.000223 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-30 04:39:42 (66154): Guest Log: 00:00:00.000238 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-30 04:39:42 (66154): Guest Log: 00:00:00.000255 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-30 04:39:42 (66154): Guest Log: 00:00:00.000255 main     Process ID: 1299
2025-11-30 04:39:42 (66154): Guest Log: 00:00:00.000256 main     Package type: LINUX_64BITS_GENERIC
2025-11-30 04:39:42 (66154): Guest Log: 00:00:00.002001 main     5.2.32 r132073 started. Verbose level = 0
2025-11-30 04:39:42 (66154): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-30 04:39:42 (66154): Guest Log: [INFO] Mounting shared directory
2025-11-30 04:39:42 (66154): Guest Log: [INFO] Checking for init_data.xml
2025-11-30 04:39:46 (66154): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-30 04:39:46 (66154): Guest Log: [INFO] Detected branch: prod
2025-11-30 04:39:46 (66154): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-30 04:39:46 (66154): Guest Log: Copying input files
2025-11-30 04:39:47 (66154): Guest Log: Copied input files into RunAtlas.
2025-11-30 04:39:47 (66154): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-30 04:39:47 (66154): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-30 04:39:47 (66154): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-30 04:39:47 (66154): Guest Log: Further information can be found at the LHC@home message board.
2025-11-30 04:39:57 (66154): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-30 04:39:57 (66154): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-30 04:39:57 (66154): Guest Log: 2.6.3.0 1574 0 30176 153477 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-30 04:39:59 (66154): Guest Log: copied the webapp to /var/www
2025-11-30 04:39:59 (66154): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-30 04:39:59 (66154): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-30 04:39:59 (66154): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-30 04:39:59 (66154): Guest Log:  *** Starting ATLAS job. (PandaID=6894266724 taskID=47533967) ***
2025-11-30 06:18:36 (66154): Status Report: Elapsed Time: '6000.000000'
2025-11-30 06:18:36 (66154): Status Report: CPU Time: '22280.210000'
2025-11-30 07:57:48 (66154): Status Report: Elapsed Time: '12000.000000'
2025-11-30 07:57:48 (66154): Status Report: CPU Time: '46045.270000'
2025-11-30 09:36:59 (66154): Status Report: Elapsed Time: '18000.000000'
2025-11-30 09:36:59 (66154): Status Report: CPU Time: '69815.250000'
2025-11-30 11:16:12 (66154): Status Report: Elapsed Time: '24000.000000'
2025-11-30 11:16:12 (66154): Status Report: CPU Time: '93583.050000'
2025-11-30 12:55:23 (66154): Status Report: Elapsed Time: '30000.000000'
2025-11-30 12:55:23 (66154): Status Report: CPU Time: '117355.030000'
2025-11-30 14:13:47 (66154): Guest Log:  *** Job finished ***
2025-11-30 14:13:47 (66154): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:27,621 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:27,621 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:38,315 | INFO     | [monitor] cgroup control has ended
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:39,590 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140532931143488)>', '<ExcThread(monitor, started 140532177159936)>']
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:39,757 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:39,757 | INFO     | [monitor] control thread has ended
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,597 | INFO     | all workflow threads have been joined
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,597 | INFO     | end of generic workflow (traces error code: 0)
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,597 | INFO     | traces error code: 0
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,598 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,671 [wrapper] ==== pilot stdout END ====
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,676 [wrapper] ==== wrapper stdout RESUME ====
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,680 [wrapper] pilotpid: 5975
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,686 [wrapper] Pilot exit status: 0
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,702 [wrapper] pandaids: 6894266724
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,731 [wrapper] cleanup supervisor_pilot 14240 5976
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,735 [wrapper] Test setup, not cleaning
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,740 [wrapper] apfmon messages muted
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,744 [wrapper] ==== wrapper stdout END ====
2025-11-30 14:13:47 (66154): Guest Log: 2025-11-30 20:13:44,749 [wrapper] ==== wrapper stderr END ====
2025-11-30 14:13:47 (66154): Guest Log:  *** Error codes and diagnostics ***
2025-11-30 14:13:47 (66154): Guest Log:     "exeErrorCode": 0,
2025-11-30 14:13:47 (66154): Guest Log:     "exeErrorDiag": "",
2025-11-30 14:13:47 (66154): Guest Log:     "pilotErrorCode": 0,
2025-11-30 14:13:47 (66154): Guest Log:     "pilotErrorDiag": "",
2025-11-30 14:13:47 (66154): Guest Log:  *** Listing of results directory ***
2025-11-30 14:13:47 (66154): Guest Log: total 917864
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 05:09 pilot3.tar.gz
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 05:15 queuedata.json
2025-11-30 14:13:47 (66154): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 05:16 runpilot2-wrapper.sh
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 30 10:39 start_atlas.sh
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 atlas atlas    590107 Nov 30 10:39 input.tar.gz
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 atlas atlas      9078 Nov 30 10:39 init_data.xml
2025-11-30 14:13:47 (66154): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 30 10:39 EVNT.47493127._002235.pool.root.1 -> /data/./ATLAS.root_0
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 30 10:39 pandaJob.out
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas    991788 Nov 30 10:40 agis_schedconf.cvmfs.json
2025-11-30 14:13:47 (66154): Guest Log: drwx------. 5 atlas atlas      4096 Nov 30 10:41 pilot3
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas 924510432 Nov 30 20:12 HITS.47533967._002066.pool.root.1
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 30 20:12 memory_monitor_summary.json
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 30 20:12 agis_ddmendpoints.agis.ALL.json
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas   1359368 Nov 30 20:12 log.47533967._002066.job.log.tgz.1
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas      8656 Nov 30 20:12 heartbeat.json
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas        95 Nov 30 20:13 pilot_heartbeat.json
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas      4877 Nov 30 20:13 pilotlog.txt
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas   4408815 Nov 30 20:13 log.47533967._002066.job.log.1
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas       353 Nov 30 20:13 output.list
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 30 20:13 runtime_log
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas   5785600 Nov 30 20:13 result.tar.gz
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas       665 Nov 30 20:13 UZ7NDmXgYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDma5IKDmZFaWAo.diag
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 atlas atlas      8759 Nov 30 20:13 runtime_log.err
2025-11-30 14:13:47 (66154): Guest Log: Looking for outputfile HITS.47533967._002066.pool.root.1
2025-11-30 14:13:47 (66154): Guest Log: HITS file was successfully produced
2025-11-30 14:13:47 (66154): Guest Log: -rw-------. 1 atlas atlas 924510432 Nov 30 20:12 /home/atlas/RunAtlas/HITS.47533967._002066.pool.root.1
2025-11-30 14:13:47 (66154): Guest Log: Successfully finished the ATLAS job!
2025-11-30 14:13:47 (66154): Guest Log: Copying the results back to the shared directory!
2025-11-30 14:13:47 (66154): Guest Log:  *** Contents of shared directory: ***
2025-11-30 14:13:47 (66154): Guest Log: total 406980
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 root root 410333785 Nov 30 10:39 ATLAS.root_0
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 root root      9078 Nov 30 10:39 init_data.xml
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 root root    590107 Nov 30 10:39 input.tar.gz
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 root root   5785600 Nov 30 20:13 result.tar.gz
2025-11-30 14:13:47 (66154): Guest Log: -rw-r--r--. 1 root root     15847 Nov 30 10:39 start_atlas.sh
2025-11-30 14:13:47 (66154): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-30 14:13:47 (66154): VM Completion File Detected.
2025-11-30 14:13:47 (66154): Powering off VM.
2025-11-30 14:13:47 (66154): Successfully stopped VM.
2025-11-30 14:13:47 (66154): Deregistering VM. (boinc_1741f1ccfa8736e1, slot#0)
2025-11-30 14:13:47 (66154): Removing network bandwidth throttle group from VM.
2025-11-30 14:13:47 (66154): Removing VM from VirtualBox.
2025-11-30 14:13:52 (66154): called boinc_finish(0)

</stderr_txt>
]]>

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