Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:38:30 (21912): wrapper (7.7.26015): starting
21:38:30 (21912): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 21:38:30] Arguments: --nthreads 8
[2025-12-01 21:38:30] Threads: 8
[2025-12-01 21:38:30] Checking for CVMFS
[2025-12-01 21:38:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 21:38:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 21:38:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 21:38:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 21:38:33] 2.11.2.0 27863 293080 138048 153531 2 85 12724444 25165825 2554 130560 9 148701213 99.879 84353405 3612 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 21:38:33] CVMFS is ok
[2025-12-01 21:38:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 21:38:33] Checking for apptainer binary...
[2025-12-01 21:38:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 21:38:33] Running /usr/bin/apptainer --version
[2025-12-01 21:38:33] apptainer version 1.3.2-1.el7
[2025-12-01 21:38:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 21:38:40] cg-vwn495.simple-grid.lan
[2025-12-01 21:38:40] apptainer works
[2025-12-01 21:38:40] Set ATHENA_PROC_NUMBER=8
[2025-12-01 21:38:40] Set ATHENA_CORE_NUMBER=8
[2025-12-01 21:38:41] Starting ATLAS job with PandaID=6898025115
[2025-12-01 21:38:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 16:02:34]  *** The last 200 lines of the pilot log: ***
[2025-12-02 16:02:34] 2025-12-02 15:01:24,824 | INFO     | monitor loop #4535: job 0:6898025115 is in state 'finished'
[2025-12-02 16:02:34] 2025-12-02 15:01:24,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:34] 2025-12-02 15:01:26,087 | INFO     | time since job start (65935s) is within the limit (172800.0s)
[2025-12-02 16:02:34] 2025-12-02 15:01:27,336 | INFO     | monitor loop #4536: job 0:6898025115 is in state 'finished'
[2025-12-02 16:02:34] 2025-12-02 15:01:27,337 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:34] 2025-12-02 15:01:28,097 | INFO     | time since job start (65937s) is within the limit (172800.0s)
[2025-12-02 16:02:34] 2025-12-02 15:01:29,842 | INFO     | monitor loop #4537: job 0:6898025115 is in state 'finished'
[2025-12-02 16:02:34] 2025-12-02 15:01:29,843 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:34] 2025-12-02 15:01:30,104 | INFO     | time since job start (65939s) is within the limit (172800.0s)
[2025-12-02 16:02:34] 2025-12-02 15:01:32,113 | INFO     | time since job start (65941s) is within the limit (172800.0s)
[2025-12-02 16:02:34] 2025-12-02 15:01:32,346 | INFO     | monitor loop #4538: job 0:6898025115 is in state 'finished'
[2025-12-02 16:02:34] 2025-12-02 15:01:32,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:34] 2025-12-02 15:01:34,120 | INFO     | time since job start (65943s) is within the limit (172800.0s)
[2025-12-02 16:02:34] 2025-12-02 15:01:34,852 | INFO     | monitor loop #4539: job 0:6898025115 is in state 'finished'
[2025-12-02 16:02:34] 2025-12-02 15:01:34,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:34] 2025-12-02 15:01:35,029 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 16:02:34] 2025-12-02 15:01:35,030 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-02 16:02:34] 2025-12-02 15:01:35,032 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6898025115/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 16:02:34] 2025-12-02 15:01:35,033 | INFO     | extracted standard info from prmon json
[2025-12-02 16:02:34] 2025-12-02 15:01:35,033 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 16:02:34] 2025-12-02 15:01:35,033 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 16:02:34] 2025-12-02 15:01:35,052 | INFO     | fitting pss+swap vs Time
[2025-12-02 16:02:34] 2025-12-02 15:01:35,054 | INFO     | sum of square deviations: 378802710931.3677
[2025-12-02 16:02:34] 2025-12-02 15:01:35,085 | INFO     | sum of deviations: 4249676414360.4995
[2025-12-02 16:02:34] 2025-12-02 15:01:35,086 | INFO     | mean x: 1764654990.0243218
[2025-12-02 16:02:34] 2025-12-02 15:01:35,086 | INFO     | mean y: 3332934.2497661365
[2025-12-02 16:02:34] 2025-12-02 15:01:35,086 | INFO     | intersect: -19793813374.84475
[2025-12-02 16:02:34] 2025-12-02 15:01:35,087 | INFO     | chi2: 24.3963983586441
[2025-12-02 16:02:34] 2025-12-02 15:01:35,089 | INFO     | sum of square deviations: 373512601521.09674
[2025-12-02 16:02:34] 2025-12-02 15:01:35,121 | INFO     | sum of deviations: 4690167347644.571
[2025-12-02 16:02:34] 2025-12-02 15:01:35,121 | INFO     | mean x: 1764654837.5291352
[2025-12-02 16:02:34] 2025-12-02 15:01:35,121 | INFO     | mean y: 3345633.5460526315
[2025-12-02 16:02:34] 2025-12-02 15:01:35,122 | INFO     | intersect: -22155281585.82157
[2025-12-02 16:02:34] 2025-12-02 15:01:35,123 | INFO     | chi2: 21.11289970329041
[2025-12-02 16:02:34] 2025-12-02 15:01:35,123 | INFO     | current chi2=21.11289970329041 (change=13.458948354113446 %)
[2025-12-02 16:02:34] 2025-12-02 15:01:35,123 | INFO     | right removable region: 1063
[2025-12-02 16:02:34] 2025-12-02 15:01:35,125 | INFO     | sum of square deviations: 373511933571.0966
[2025-12-02 16:02:34] 2025-12-02 15:01:35,156 | INFO     | sum of deviations: 3706721758442.4116
[2025-12-02 16:02:34] 2025-12-02 15:01:35,157 | INFO     | mean x: 1764655142.5291352
[2025-12-02 16:02:34] 2025-12-02 15:01:35,157 | INFO     | mean y: 3348584.82518797
[2025-12-02 16:02:34] 2025-12-02 15:01:35,157 | INFO     | intersect: -17509038637.77735
[2025-12-02 16:02:34] 2025-12-02 15:01:35,158 | INFO     | chi2: 18.9348345647367
[2025-12-02 16:02:34] 2025-12-02 15:01:35,159 | INFO     | current chi2=18.9348345647367 (change=22.386762642659768 %)
[2025-12-02 16:02:34] 2025-12-02 15:01:35,159 | INFO     | left removable region: 10
[2025-12-02 16:02:34] 2025-12-02 15:01:35,160 | INFO     | sum of square deviations: 362046899806.3252
[2025-12-02 16:02:34] 2025-12-02 15:01:35,196 | INFO     | sum of deviations: 3653286118686.143
[2025-12-02 16:02:34] 2025-12-02 15:01:35,196 | INFO     | mean x: 1764655112.039886
[2025-12-02 16:02:34] 2025-12-02 15:01:35,197 | INFO     | mean y: 3377966.5679012346
[2025-12-02 16:02:34] 2025-12-02 15:01:35,197 | INFO     | intersect: -17803127291.54238
[2025-12-02 16:02:34] 2025-12-02 15:01:35,198 | INFO     | chi2: 10.379808431133366
[2025-12-02 16:02:34] 2025-12-02 15:01:35,198 | INFO     | current memory leak: 10.09 B/s (using 1053 data points, chi2=10.38)
[2025-12-02 16:02:34] 2025-12-02 15:01:35,199 | INFO     | could have reported an average CPU frequency of 2249 MHz (37 samples)
[2025-12-02 16:02:34] 2025-12-02 15:01:35,200 | INFO     | ..............................
[2025-12-02 16:02:34] 2025-12-02 15:01:35,200 | INFO     | . Timing measurements:
[2025-12-02 16:02:34] 2025-12-02 15:01:35,200 | INFO     | . get job = 0 s
[2025-12-02 16:02:34] 2025-12-02 15:01:35,200 | INFO     | . initial setup = 7 s
[2025-12-02 16:02:34] 2025-12-02 15:01:35,200 | INFO     | . payload setup = 294 s
[2025-12-02 16:02:34] 2025-12-02 15:01:35,200 | INFO     | . stage-in = 0 s
[2025-12-02 16:02:34] 2025-12-02 15:01:35,200 | INFO     | . payload execution = 65354 s
[2025-12-02 16:02:34] 2025-12-02 15:01:35,200 | INFO     | . stage-out = 4 s
[2025-12-02 16:02:34] 2025-12-02 15:01:35,201 | INFO     | . log creation = 1 s
[2025-12-02 16:02:34] 2025-12-02 15:01:35,201 | INFO     | ..............................
[2025-12-02 16:02:34] 2025-12-02 15:01:35,717 | INFO     | 
[2025-12-02 16:02:34] 2025-12-02 15:01:35,718 | INFO     | job summary report
[2025-12-02 16:02:34] 2025-12-02 15:01:35,718 | INFO     | --------------------------------------------------
[2025-12-02 16:02:34] 2025-12-02 15:01:35,718 | INFO     | PanDA job id: 6898025115
[2025-12-02 16:02:34] 2025-12-02 15:01:35,718 | INFO     | task id: 47531111
[2025-12-02 16:02:34] 2025-12-02 15:01:35,718 | INFO     | errors: (none)
[2025-12-02 16:02:34] 2025-12-02 15:01:35,718 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 16:02:34] 2025-12-02 15:01:35,718 | INFO     | pilot state: finished 
[2025-12-02 16:02:34] 2025-12-02 15:01:35,718 | INFO     | transexitcode: 0
[2025-12-02 16:02:34] 2025-12-02 15:01:35,719 | INFO     | exeerrorcode: 0
[2025-12-02 16:02:34] 2025-12-02 15:01:35,719 | INFO     | exeerrordiag: 
[2025-12-02 16:02:34] 2025-12-02 15:01:35,719 | INFO     | exitcode: 0
[2025-12-02 16:02:34] 2025-12-02 15:01:35,719 | INFO     | exitmsg: OK
[2025-12-02 16:02:34] 2025-12-02 15:01:35,719 | INFO     | cpuconsumptiontime: 243280 s
[2025-12-02 16:02:34] 2025-12-02 15:01:35,719 | INFO     | nevents: 1000
[2025-12-02 16:02:34] 2025-12-02 15:01:35,719 | INFO     | neventsw: 0
[2025-12-02 16:02:34] 2025-12-02 15:01:35,719 | INFO     | pid: 677
[2025-12-02 16:02:34] 2025-12-02 15:01:35,719 | INFO     | pgrp: 677
[2025-12-02 16:02:34] 2025-12-02 15:01:35,719 | INFO     | corecount: 8
[2025-12-02 16:02:34] 2025-12-02 15:01:35,719 | INFO     | event service: False
[2025-12-02 16:02:34] 2025-12-02 15:01:35,720 | INFO     | sizes: {0: 2283622, 1: 2284479, 2: 2284479, 12: 2284507, 23: 2284535, 34: 2284563, 44: 2284719, 55: 2284747, 66: 2284775, 77: 2284803, 87: 2284859, 98: 2285167, 10
[2025-12-02 16:02:34] 2025-12-02 15:01:35,720 | INFO     | --------------------------------------------------
[2025-12-02 16:02:34] 2025-12-02 15:01:35,720 | INFO     | 
[2025-12-02 16:02:34] 2025-12-02 15:01:35,720 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-12-02 16:02:34] 2025-12-02 15:01:36,138 | INFO     | time since job start (65945s) is within the limit (172800.0s)
[2025-12-02 16:02:34] 2025-12-02 15:01:36,291 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,291 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,291 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,291 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,291 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,291 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,291 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,292 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,292 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,292 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,292 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,292 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,292 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,292 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,292 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,292 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,292 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,293 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 16:02:34] 2025-12-02 15:01:36,293 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,293 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 16:02:34] 2025-12-02 15:01:36,293 | INFO     | job 6898025115 has completed (purged errors)
[2025-12-02 16:02:34] 2025-12-02 15:01:36,293 | INFO     | overall cleanup function is called
[2025-12-02 16:02:34] 2025-12-02 15:01:37,309 | INFO     | --- collectZombieJob: --- 10, [677]
[2025-12-02 16:02:34] 2025-12-02 15:01:37,310 | INFO     | zombie collector waiting for pid 677
[2025-12-02 16:02:34] 2025-12-02 15:01:37,310 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 16:02:34] 2025-12-02 15:01:37,310 | INFO     | collected zombie processes
[2025-12-02 16:02:34] 2025-12-02 15:01:37,310 | INFO     | will attempt to kill all subprocesses of pid=677
[2025-12-02 16:02:34] 2025-12-02 15:01:37,441 | INFO     | process IDs to be killed: [677] (in reverse order)
[2025-12-02 16:02:34] 2025-12-02 15:01:38,070 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 16:02:34] 2025-12-02 15:01:38,070 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 16:02:34] 2025-12-02 15:01:38,074 | INFO     | did not find any defunct processes belonging to 677
[2025-12-02 16:02:34] 2025-12-02 15:01:38,077 | INFO     | did not find any defunct processes belonging to 677
[2025-12-02 16:02:34] 2025-12-02 15:01:38,124 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 16:02:34] 2025-12-02 15:01:38,124 | INFO     | ready for new job
[2025-12-02 16:02:34] 2025-12-02 15:01:38,124 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 16:02:34] 2025-12-02 15:01:38,129 | INFO     | ***************************************
[2025-12-02 16:02:34] 2025-12-02 15:01:38,129 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 16:02:34] 2025-12-02 15:01:38,129 | INFO     | ***************************************
[2025-12-02 16:02:34] 2025-12-02 15:01:38,129 | INFO     | 
[2025-12-02 16:02:34] 2025-12-02 15:01:38,132 | INFO     | pilot is running in a VM
[2025-12-02 16:02:34] 2025-12-02 15:01:38,132 | INFO     | architecture information:
[2025-12-02 16:02:34] 2025-12-02 15:01:38,146 | INFO     | executing command: cat /etc/os-release
[2025-12-02 16:02:34] 2025-12-02 15:01:38,419 | INFO     | cat /etc/os-release:
[2025-12-02 16:02:34] NAME="CentOS Linux"
[2025-12-02 16:02:34] VERSION="7 (Core)"
[2025-12-02 16:02:34] ID="centos"
[2025-12-02 16:02:34] ID_LIKE="rhel fedora"
[2025-12-02 16:02:34] VERSION_ID="7"
[2025-12-02 16:02:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 16:02:34] ANSI_COLOR="0;31"
[2025-12-02 16:02:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 16:02:34] HOME_URL="https://www.centos.org/"
[2025-12-02 16:02:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 16:02:34] 
[2025-12-02 16:02:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 16:02:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 16:02:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 16:02:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 16:02:34] 
[2025-12-02 16:02:34] 2025-12-02 15:01:38,419 | INFO     | ***************************************
[2025-12-02 16:02:34] 2025-12-02 15:01:38,923 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-12-02 16:02:34] 2025-12-02 15:01:39,238 | INFO     | sufficient remaining disk space (489511976960 B)
[2025-12-02 16:02:34] 2025-12-02 15:01:39,238 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 16:02:34] 2025-12-02 15:01:39,238 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 16:02:34] 2025-12-02 15:01:39,238 | INFO     | update_server=False
[2025-12-02 16:02:34] 2025-12-02 15:01:39,238 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 16:02:34] 2025-12-02 15:01:39,239 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 16:02:34] 2025-12-02 15:01:39,240 | INFO     | aborting loop
[2025-12-02 16:02:34] 2025-12-02 15:01:39,245 | INFO     | all job control threads have been joined
[2025-12-02 16:02:34] 2025-12-02 15:01:39,834 | INFO     | all data control threads have been joined
[2025-12-02 16:02:34] 2025-12-02 15:01:40,245 | INFO     | [job] retrieve thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:40,246 | INFO     | [job] job monitor thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:40,247 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:40,251 | INFO     | [job] control thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:40,333 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 16:02:34] 2025-12-02 15:01:40,391 | INFO     | all payload control threads have been joined
[2025-12-02 16:02:34] 2025-12-02 15:01:40,593 | INFO     | [data] copytool_in thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:40,638 | INFO     | [payload] failed_post thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:40,738 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 16:02:34] 2025-12-02 15:01:40,841 | INFO     | [data] control thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:40,922 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:41,143 | INFO     | [payload] validate_post thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:41,340 | INFO     | [job] queue monitor thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:41,355 | INFO     | [job] validate thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:41,398 | INFO     | [payload] control thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:41,502 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:41,622 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:41,793 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 16:02:34] 2025-12-02 15:01:42,744 | INFO     | [data] copytool_out thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:01:45,803 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 16:02:34] 2025-12-02 15:02:09,329 | INFO     | PID=25715 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 16:02:34] 2025-12-02 15:02:09,329 | INFO     | .. there are 9 such processes running
[2025-12-02 16:02:34] 2025-12-02 15:02:09,331 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 16:02:34] 2025-12-02 15:02:09,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 16:02:34] 2025-12-02 15:02:09,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 16:02:34] 2025-12-02 15:02:25,107 | INFO     | [monitor] cgroup control has ended
[2025-12-02 16:02:34] 2025-12-02 15:02:25,346 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139621833119552)>', '<ExcThread(monitor, started 139621258225408)>']
[2025-12-02 16:02:34] 2025-12-02 15:02:25,423 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 16:02:34] 2025-12-02 15:02:25,424 | INFO     | [monitor] control thread has ended
[2025-12-02 16:02:34] 2025-12-02 15:02:30,372 | INFO     | all workflow threads have been joined
[2025-12-02 16:02:34] 2025-12-02 15:02:30,373 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 16:02:34] 2025-12-02 15:02:30,373 | INFO     | traces error code: 0
[2025-12-02 16:02:34] 2025-12-02 15:02:30,373 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 16:02:34] 2025-12-02 15:02:30,677 [wrapper] ==== pilot stdout END ====
[2025-12-02 16:02:34] 2025-12-02 15:02:30,738 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 16:02:34] 2025-12-02 15:02:30,776 [wrapper] pilotpid: 25715
[2025-12-02 16:02:34] 2025-12-02 15:02:30,841 [wrapper] Pilot exit status: 0
[2025-12-02 16:02:34] 2025-12-02 15:02:31,175 [wrapper] pandaids: 6898025115
[2025-12-02 16:02:34] 2025-12-02 15:02:32,079 [wrapper] cleanup supervisor_pilot  3669 25716
[2025-12-02 16:02:34] 2025-12-02 15:02:32,171 [wrapper] Test setup, not cleaning
[2025-12-02 16:02:34] 2025-12-02 15:02:32,283 [wrapper] apfmon messages muted
[2025-12-02 16:02:34] 2025-12-02 15:02:32,340 [wrapper] ==== wrapper stdout END ====
[2025-12-02 16:02:34] 2025-12-02 15:02:32,426 [wrapper] ==== wrapper stderr END ====
[2025-12-02 16:02:34]  *** Error codes and diagnostics ***
[2025-12-02 16:02:34]     "exeErrorCode": 0,
[2025-12-02 16:02:34]     "exeErrorDiag": "",
[2025-12-02 16:02:34]     "pilotErrorCode": 0,
[2025-12-02 16:02:34]     "pilotErrorDiag": "",
[2025-12-02 16:02:34]  *** Listing of results directory ***
[2025-12-02 16:02:34] total 1083576
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc    598293 Nov  6 09:41 pilot3.tar.gz
[2025-12-02 16:02:34] -rwx------. 1 boinc boinc     36292 Nov 28 23:46 runpilot2-wrapper.sh
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc      5112 Nov 28 23:49 queuedata.json
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc       100 Dec  1 21:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 16:02:34] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 21:38 run_atlas
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc       105 Dec  1 21:38 job.xml
[2025-12-02 16:02:34] -rw-r--r--. 2 boinc boinc 376093862 Dec  1 21:38 EVNT.47531104._000059.pool.root.1
[2025-12-02 16:02:34] -rw-r--r--. 2 boinc boinc     15847 Dec  1 21:38 start_atlas.sh
[2025-12-02 16:02:34] drwxrwx--x. 2 boinc boinc        68 Dec  1 21:38 shared
[2025-12-02 16:02:34] -rw-r--r--. 2 boinc boinc    611303 Dec  1 21:38 input.tar.gz
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc      6392 Dec  1 21:38 init_data.xml
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc         0 Dec  1 21:38 boinc_lockfile
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc      2879 Dec  1 21:38 pandaJob.out
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc    992004 Dec  1 21:42 agis_schedconf.cvmfs.json
[2025-12-02 16:02:34] drwx------. 7 boinc boinc      4096 Dec  1 21:42 pilot3
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc       533 Dec  2 15:50 boinc_task_state.xml
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc 707095959 Dec  2 15:59 HITS.47531111._000538.pool.root.1
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc      1032 Dec  2 16:00 memory_monitor_summary.json
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc   1516240 Dec  2 16:00 agis_ddmendpoints.agis.ALL.json
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc   2341644 Dec  2 16:00 log.47531111._000538.job.log.tgz.1
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc     27824 Dec  2 16:01 heartbeat.json
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc      8192 Dec  2 16:02 boinc_mmap_file
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc        29 Dec  2 16:02 wrapper_checkpoint.txt
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc        95 Dec  2 16:02 pilot_heartbeat.json
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc      4885 Dec  2 16:02 pilotlog.txt
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc   8864018 Dec  2 16:02 log.47531111._000538.job.log.1
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc       353 Dec  2 16:02 output.list
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc       620 Dec  2 16:02 runtime_log
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc  11243520 Dec  2 16:02 result.tar.gz
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc      8833 Dec  2 16:02 runtime_log.err
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc       661 Dec  2 16:02 38lMDmjPMj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmevOKDmFAJDdn.diag
[2025-12-02 16:02:34] -rw-r--r--. 1 boinc boinc     21426 Dec  2 16:02 stderr.txt
[2025-12-02 16:02:34] HITS file was successfully produced:
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc 707095959 Dec  2 15:59 shared/HITS.pool.root.1
[2025-12-02 16:02:34]  *** Contents of shared directory: ***
[2025-12-02 16:02:34] total 1069400
[2025-12-02 16:02:34] -rw-r--r--. 2 boinc boinc 376093862 Dec  1 21:38 ATLAS.root_0
[2025-12-02 16:02:34] -rw-r--r--. 2 boinc boinc     15847 Dec  1 21:38 start_atlas.sh
[2025-12-02 16:02:34] -rw-r--r--. 2 boinc boinc    611303 Dec  1 21:38 input.tar.gz
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc 707095959 Dec  2 15:59 HITS.pool.root.1
[2025-12-02 16:02:34] -rw-------. 1 boinc boinc  11243520 Dec  2 16:02 result.tar.gz
16:02:36 (21912): run_atlas exited; CPU time 243555.634732
16:02:36 (21912): called boinc_finish(0)

</stderr_txt>
]]>

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