Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:39:37 (18607): wrapper (7.7.26015): starting
20:39:37 (18607): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 20:39:37] Arguments: --nthreads 8
[2025-11-29 20:39:37] Threads: 8
[2025-11-29 20:39:37] Checking for CVMFS
[2025-11-29 20:39:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 20:39:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 20:39:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 20:39:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 20:39:37] 2.11.2.0 7040 122794 142776 153463 0 102 18277294 18432000 1858 130560 0 89462016 99.975 5057853 31388 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 20:39:37] CVMFS is ok
[2025-11-29 20:39:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 20:39:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 20:39:37] Further information can be found at the LHC@home message board.
[2025-11-29 20:39:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 20:39:37] Checking for apptainer binary...
[2025-11-29 20:39:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 20:39:37] Running /usr/bin/apptainer --version
[2025-11-29 20:39:37] apptainer version 1.3.2-1.el7
[2025-11-29 20:39:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 20:39:38] c-206-7.aglt2.org
[2025-11-29 20:39:38] apptainer works
[2025-11-29 20:39:38] Set ATHENA_PROC_NUMBER=8
[2025-11-29 20:39:38] Set ATHENA_CORE_NUMBER=8
[2025-11-29 20:39:38] Starting ATLAS job with PandaID=6897951941
[2025-11-29 20:39:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:29:09 (28315): wrapper (7.7.26015): starting
10:29:09 (28315): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 10:29:09] Arguments: --nthreads 8
[2025-11-30 10:29:09] Threads: 8
[2025-11-30 10:29:09] This job has been restarted, cleaning up previous attempt
[2025-11-30 10:29:09] Checking for CVMFS
[2025-11-30 10:29:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 10:29:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 10:29:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 10:29:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 10:29:09] 2.11.2.0 7040 123624 143072 153485 3 69 18376587 18432001 1 130560 0 90074073 99.975 5089359 31412 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 10:29:09] CVMFS is ok
[2025-11-30 10:29:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 10:29:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 10:29:09] Further information can be found at the LHC@home message board.
[2025-11-30 10:29:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 10:29:09] Checking for apptainer binary...
[2025-11-30 10:29:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 10:29:09] Running /usr/bin/apptainer --version
[2025-11-30 10:29:09] apptainer version 1.3.2-1.el7
[2025-11-30 10:29:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 10:29:10] c-206-7.aglt2.org
[2025-11-30 10:29:10] apptainer works
[2025-11-30 10:29:10] Set ATHENA_PROC_NUMBER=8
[2025-11-30 10:29:10] Set ATHENA_CORE_NUMBER=8
[2025-11-30 10:29:10] Starting ATLAS job with PandaID=6897951941
[2025-11-30 10:29:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 03:31:12]  *** The last 200 lines of the pilot log: ***
[2025-12-01 03:31:12] 2025-12-01 08:30:56,755 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:31:12] 2025-12-01 08:30:57,019 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 03:31:12] 2025-12-01 08:30:57,024 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2400.25
[2025-12-01 03:31:12] 2025-12-01 08:30:57,028 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6897951941/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 03:31:12] 2025-12-01 08:30:57,029 | INFO     | extracted standard info from prmon json
[2025-12-01 03:31:12] 2025-12-01 08:30:57,029 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 03:31:12] 2025-12-01 08:30:57,029 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 03:31:12] 2025-12-01 08:30:57,045 | INFO     | fitting pss+swap vs Time
[2025-12-01 03:31:12] 2025-12-01 08:30:57,046 | INFO     | sum of square deviations: 314756849366.97473
[2025-12-01 03:31:12] 2025-12-01 08:30:57,064 | INFO     | sum of deviations: 1847978901056.584
[2025-12-01 03:31:12] 2025-12-01 08:30:57,064 | INFO     | mean x: 1764547217.6616914
[2025-12-01 03:31:12] 2025-12-01 08:30:57,064 | INFO     | mean y: 3376056.1164179104
[2025-12-01 03:31:12] 2025-12-01 08:30:57,064 | INFO     | intersect: -10356512965.250319
[2025-12-01 03:31:12] 2025-12-01 08:30:57,065 | INFO     | chi2: 5.968416832063995
[2025-12-01 03:31:12] 2025-12-01 08:30:57,066 | INFO     | sum of square deviations: 310082508729.7744
[2025-12-01 03:31:12] 2025-12-01 08:30:57,092 | INFO     | sum of deviations: 2231307804134.2915
[2025-12-01 03:31:12] 2025-12-01 08:30:57,093 | INFO     | mean x: 1764547065.165
[2025-12-01 03:31:12] 2025-12-01 08:30:57,093 | INFO     | mean y: 3388554.574
[2025-12-01 03:31:12] 2025-12-01 08:30:57,093 | INFO     | intersect: -12694030765.83047
[2025-12-01 03:31:12] 2025-12-01 08:30:57,095 | INFO     | chi2: 2.9180564317412987
[2025-12-01 03:31:12] 2025-12-01 08:30:57,095 | INFO     | current chi2=2.9180564317412987 (change=51.10836736360825 %)
[2025-12-01 03:31:12] 2025-12-01 08:30:57,096 | INFO     | sum of square deviations: 305454680592.5531
[2025-12-01 03:31:12] 2025-12-01 08:30:57,128 | INFO     | sum of deviations: 2330841349609.5215
[2025-12-01 03:31:12] 2025-12-01 08:30:57,128 | INFO     | mean x: 1764546912.6683416
[2025-12-01 03:31:12] 2025-12-01 08:30:57,129 | INFO     | mean y: 3391828.686432161
[2025-12-01 03:31:12] 2025-12-01 08:30:57,129 | INFO     | intersect: -13461384351.513515
[2025-12-01 03:31:12] 2025-12-01 08:30:57,130 | INFO     | chi2: 2.5582507673272374
[2025-12-01 03:31:12] 2025-12-01 08:30:57,130 | INFO     | current chi2=2.5582507673272374 (change=12.330318923933682 %)
[2025-12-01 03:31:12] 2025-12-01 08:30:57,131 | INFO     | right removable region: 994
[2025-12-01 03:31:12] 2025-12-01 08:30:57,132 | INFO     | sum of square deviations: 310082103079.77466
[2025-12-01 03:31:12] 2025-12-01 08:30:57,164 | INFO     | sum of deviations: 1522491751113.526
[2025-12-01 03:31:12] 2025-12-01 08:30:57,165 | INFO     | mean x: 1764547370.165
[2025-12-01 03:31:12] 2025-12-01 08:30:57,165 | INFO     | mean y: 3386660.815
[2025-12-01 03:31:12] 2025-12-01 08:30:57,165 | INFO     | intersect: -8660476196.28811
[2025-12-01 03:31:12] 2025-12-01 08:30:57,166 | INFO     | chi2: 3.6496544527402253
[2025-12-01 03:31:12] 2025-12-01 08:30:57,167 | INFO     | current chi2=3.6496544527402253 (change=38.850543528842245 %)
[2025-12-01 03:31:12] 2025-12-01 08:30:57,168 | INFO     | sum of square deviations: 305453991293.22174
[2025-12-01 03:31:12] 2025-12-01 08:30:57,199 | INFO     | sum of deviations: 1439061587398.0784
[2025-12-01 03:31:12] 2025-12-01 08:30:57,199 | INFO     | mean x: 1764547522.6663318
[2025-12-01 03:31:12] 2025-12-01 08:30:57,199 | INFO     | mean y: 3389409.226130653
[2025-12-01 03:31:12] 2025-12-01 08:30:57,199 | INFO     | intersect: -8309785836.108786
[2025-12-01 03:31:12] 2025-12-01 08:30:57,201 | INFO     | chi2: 3.5802991173243113
[2025-12-01 03:31:12] 2025-12-01 08:30:57,201 | INFO     | current chi2=3.5802991173243113 (change=1.9003260805647169 %)
[2025-12-01 03:31:12] 2025-12-01 08:30:57,201 | INFO     | left removable region: 20
[2025-12-01 03:31:12] 2025-12-01 08:30:57,202 | INFO     | sum of square deviations: 286519389345.6766
[2025-12-01 03:31:12] 2025-12-01 08:30:57,233 | INFO     | sum of deviations: 1813298926426.0093
[2025-12-01 03:31:12] 2025-12-01 08:30:57,233 | INFO     | mean x: 1764547492.1735113
[2025-12-01 03:31:12] 2025-12-01 08:30:57,233 | INFO     | mean y: 3409287.248459959
[2025-12-01 03:31:12] 2025-12-01 08:30:57,234 | INFO     | intersect: -11163905010.373667
[2025-12-01 03:31:12] 2025-12-01 08:30:57,235 | INFO     | chi2: 0.11511314027465216
[2025-12-01 03:31:12] 2025-12-01 08:30:57,235 | INFO     | current memory leak: 6.33 B/s (using 974 data points, chi2=0.12)
[2025-12-01 03:31:12] 2025-12-01 08:30:57,236 | INFO     | could have reported an average CPU frequency of 2569 MHz (37 samples)
[2025-12-01 03:31:12] 2025-12-01 08:30:57,237 | INFO     | ..............................
[2025-12-01 03:31:12] 2025-12-01 08:30:57,237 | INFO     | . Timing measurements:
[2025-12-01 03:31:12] 2025-12-01 08:30:57,237 | INFO     | . get job = 0 s
[2025-12-01 03:31:12] 2025-12-01 08:30:57,237 | INFO     | . initial setup = 2 s
[2025-12-01 03:31:12] 2025-12-01 08:30:57,237 | INFO     | . payload setup = 11 s
[2025-12-01 03:31:12] 2025-12-01 08:30:57,237 | INFO     | . stage-in = 0 s
[2025-12-01 03:31:12] 2025-12-01 08:30:57,237 | INFO     | . payload execution = 61251 s
[2025-12-01 03:31:12] 2025-12-01 08:30:57,238 | INFO     | . stage-out = 3 s
[2025-12-01 03:31:12] 2025-12-01 08:30:57,238 | INFO     | . log creation = 0 s
[2025-12-01 03:31:12] 2025-12-01 08:30:57,238 | INFO     | ..............................
[2025-12-01 03:31:12] 2025-12-01 08:30:57,245 | INFO     | time since job start (61294s) is within the limit (172800.0s)
[2025-12-01 03:31:12] 2025-12-01 08:30:57,377 | INFO     | 
[2025-12-01 03:31:12] 2025-12-01 08:30:57,377 | INFO     | job summary report
[2025-12-01 03:31:12] 2025-12-01 08:30:57,377 | INFO     | --------------------------------------------------
[2025-12-01 03:31:12] 2025-12-01 08:30:57,377 | INFO     | PanDA job id: 6897951941
[2025-12-01 03:31:12] 2025-12-01 08:30:57,378 | INFO     | task id: 47531111
[2025-12-01 03:31:12] 2025-12-01 08:30:57,378 | INFO     | errors: (none)
[2025-12-01 03:31:12] 2025-12-01 08:30:57,378 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 03:31:12] 2025-12-01 08:30:57,378 | INFO     | pilot state: finished 
[2025-12-01 03:31:12] 2025-12-01 08:30:57,378 | INFO     | transexitcode: 0
[2025-12-01 03:31:12] 2025-12-01 08:30:57,378 | INFO     | exeerrorcode: 0
[2025-12-01 03:31:12] 2025-12-01 08:30:57,378 | INFO     | exeerrordiag: 
[2025-12-01 03:31:12] 2025-12-01 08:30:57,378 | INFO     | exitcode: 0
[2025-12-01 03:31:12] 2025-12-01 08:30:57,378 | INFO     | exitmsg: OK
[2025-12-01 03:31:12] 2025-12-01 08:30:57,378 | INFO     | cpuconsumptiontime: 470140 s
[2025-12-01 03:31:12] 2025-12-01 08:30:57,379 | INFO     | nevents: 1000
[2025-12-01 03:31:12] 2025-12-01 08:30:57,379 | INFO     | neventsw: 0
[2025-12-01 03:31:12] 2025-12-01 08:30:57,379 | INFO     | pid: 1257
[2025-12-01 03:31:12] 2025-12-01 08:30:57,379 | INFO     | pgrp: 1257
[2025-12-01 03:31:12] 2025-12-01 08:30:57,379 | INFO     | corecount: 8
[2025-12-01 03:31:12] 2025-12-01 08:30:57,379 | INFO     | event service: False
[2025-12-01 03:31:12] 2025-12-01 08:30:57,379 | INFO     | sizes: {0: 2284279, 1: 2284478, 5: 2284740, 11: 2284796, 61266: 2355667, 61270: 2364661, 61273: 2364845, 61277: 2365091}
[2025-12-01 03:31:12] 2025-12-01 08:30:57,379 | INFO     | --------------------------------------------------
[2025-12-01 03:31:12] 2025-12-01 08:30:57,379 | INFO     | 
[2025-12-01 03:31:12] 2025-12-01 08:30:57,380 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-01 03:31:12] 2025-12-01 08:30:57,392 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,393 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,393 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,393 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,393 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,393 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,393 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,393 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,394 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,394 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,394 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,394 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,394 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,394 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 03:31:12] 2025-12-01 08:30:57,395 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,395 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 03:31:12] 2025-12-01 08:30:57,395 | INFO     | job 6897951941 has completed (purged errors)
[2025-12-01 03:31:12] 2025-12-01 08:30:57,395 | INFO     | overall cleanup function is called
[2025-12-01 03:31:12] 2025-12-01 08:30:58,404 | INFO     | --- collectZombieJob: --- 10, [1257]
[2025-12-01 03:31:12] 2025-12-01 08:30:58,404 | INFO     | zombie collector waiting for pid 1257
[2025-12-01 03:31:12] 2025-12-01 08:30:58,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 03:31:12] 2025-12-01 08:30:58,404 | INFO     | collected zombie processes
[2025-12-01 03:31:12] 2025-12-01 08:30:58,404 | INFO     | will attempt to kill all subprocesses of pid=1257
[2025-12-01 03:31:12] 2025-12-01 08:30:58,547 | INFO     | process IDs to be killed: [1257] (in reverse order)
[2025-12-01 03:31:12] 2025-12-01 08:30:58,609 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 03:31:12] 2025-12-01 08:30:58,610 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 03:31:12] 2025-12-01 08:30:58,615 | INFO     | did not find any defunct processes belonging to 1257
[2025-12-01 03:31:12] 2025-12-01 08:30:58,619 | INFO     | did not find any defunct processes belonging to 1257
[2025-12-01 03:31:12] 2025-12-01 08:30:58,620 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 03:31:12] 2025-12-01 08:30:58,620 | INFO     | ready for new job
[2025-12-01 03:31:12] 2025-12-01 08:30:58,620 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 03:31:12] 2025-12-01 08:30:58,623 | INFO     | ***************************************
[2025-12-01 03:31:12] 2025-12-01 08:30:58,623 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 03:31:12] 2025-12-01 08:30:58,624 | INFO     | ***************************************
[2025-12-01 03:31:12] 2025-12-01 08:30:58,624 | INFO     | 
[2025-12-01 03:31:12] 2025-12-01 08:30:58,624 | INFO     | architecture information:
[2025-12-01 03:31:12] 2025-12-01 08:30:58,625 | INFO     | executing command: cat /etc/os-release
[2025-12-01 03:31:12] 2025-12-01 08:30:58,637 | INFO     | cat /etc/os-release:
[2025-12-01 03:31:12] NAME="CentOS Linux"
[2025-12-01 03:31:12] VERSION="7 (Core)"
[2025-12-01 03:31:12] ID="centos"
[2025-12-01 03:31:12] ID_LIKE="rhel fedora"
[2025-12-01 03:31:12] VERSION_ID="7"
[2025-12-01 03:31:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 03:31:12] ANSI_COLOR="0;31"
[2025-12-01 03:31:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 03:31:12] HOME_URL="https://www.centos.org/"
[2025-12-01 03:31:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 03:31:12] 
[2025-12-01 03:31:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 03:31:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 03:31:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 03:31:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 03:31:12] 
[2025-12-01 03:31:12] 2025-12-01 08:30:58,637 | INFO     | ***************************************
[2025-12-01 03:31:12] 2025-12-01 08:30:59,140 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-01 03:31:12] 2025-12-01 08:30:59,157 | INFO     | sufficient remaining disk space (25832718336 B)
[2025-12-01 03:31:12] 2025-12-01 08:30:59,158 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 03:31:12] 2025-12-01 08:30:59,158 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 03:31:12] 2025-12-01 08:30:59,158 | INFO     | update_server=False
[2025-12-01 03:31:12] 2025-12-01 08:30:59,158 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 03:31:12] 2025-12-01 08:30:59,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 03:31:12] 2025-12-01 08:30:59,159 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-01 03:31:12] 2025-12-01 08:30:59,160 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 03:31:12] 2025-12-01 08:30:59,160 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 03:31:12] 2025-12-01 08:30:59,160 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 03:31:12] 2025-12-01 08:30:59,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 03:31:12] 2025-12-01 08:30:59,261 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-01 03:31:12] 2025-12-01 08:30:59,261 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-01 03:31:12] 2025-12-01 08:30:59,261 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 03:31:12] 2025-12-01 08:30:59,261 | INFO     | will abort loop
[2025-12-01 03:31:12] 2025-12-01 08:30:59,772 | INFO     | all job control threads have been joined
[2025-12-01 03:31:12] 2025-12-01 08:30:59,965 | INFO     | all data control threads have been joined
[2025-12-01 03:31:12] 2025-12-01 08:31:00,160 | INFO     | [job] retrieve thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:00,165 | INFO     | [job] queue monitor thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:00,222 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:00,228 | INFO     | [payload] failed_post thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:00,248 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:00,267 | INFO     | [job] job monitor thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:00,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 03:31:12] 2025-12-01 08:31:00,446 | INFO     | all payload control threads have been joined
[2025-12-01 03:31:12] 2025-12-01 08:31:00,601 | INFO     | [data] copytool_in thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:00,780 | INFO     | [job] control thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:00,971 | INFO     | [data] control thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:01,210 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:01,243 | INFO     | [payload] validate_post thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:01,453 | INFO     | [payload] control thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:01,553 | INFO     | [job] validate thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:01,604 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:02,396 | INFO     | [data] copytool_out thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:03,162 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 03:31:12] 2025-12-01 08:31:05,186 | INFO     | [monitor] cgroup control has ended
[2025-12-01 03:31:12] 2025-12-01 08:31:06,717 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140639373424448)>', '<ExcThread(monitor, started 140638628603648)>']
[2025-12-01 03:31:12] 2025-12-01 08:31:07,199 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 03:31:12] 2025-12-01 08:31:07,200 | INFO     | [monitor] control thread has ended
[2025-12-01 03:31:12] 2025-12-01 08:31:11,742 | INFO     | all workflow threads have been joined
[2025-12-01 03:31:12] 2025-12-01 08:31:11,742 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 03:31:12] 2025-12-01 08:31:11,743 | INFO     | traces error code: 0
[2025-12-01 03:31:12] 2025-12-01 08:31:11,743 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 03:31:12] 2025-12-01 08:31:11,861 [wrapper] ==== pilot stdout END ====
[2025-12-01 03:31:12] 2025-12-01 08:31:11,864 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 03:31:12] 2025-12-01 08:31:11,867 [wrapper] pilotpid: 7214
[2025-12-01 03:31:12] 2025-12-01 08:31:11,873 [wrapper] Pilot exit status: 0
[2025-12-01 03:31:12] 2025-12-01 08:31:11,885 [wrapper] pandaids: 6897951941 6897951941
[2025-12-01 03:31:12] 2025-12-01 08:31:11,923 [wrapper] cleanup supervisor_pilot 21735 7215
[2025-12-01 03:31:12] 2025-12-01 08:31:11,926 [wrapper] Test setup, not cleaning
[2025-12-01 03:31:12] 2025-12-01 08:31:11,929 [wrapper] apfmon messages muted
[2025-12-01 03:31:12] 2025-12-01 08:31:11,931 [wrapper] ==== wrapper stdout END ====
[2025-12-01 03:31:12] 2025-12-01 08:31:11,934 [wrapper] ==== wrapper stderr END ====
[2025-12-01 03:31:12]  *** Error codes and diagnostics ***
[2025-12-01 03:31:12]     "exeErrorCode": 0,
[2025-12-01 03:31:12]     "exeErrorDiag": "",
[2025-12-01 03:31:12]     "pilotErrorCode": 0,
[2025-12-01 03:31:12]     "pilotErrorDiag": "",
[2025-12-01 03:31:12]  *** Listing of results directory ***
[2025-12-01 03:31:12] total 1448528
[2025-12-01 03:31:12] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas    576529 Nov 28 17:41 pilot3.tar.gz
[2025-12-01 03:31:12] -rwx------ 1 boincer umatlas     36292 Nov 28 17:46 runpilot2-wrapper.sh
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas      5112 Nov 28 17:49 queuedata.json
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas       100 Nov 29 20:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 03:31:12] -rwxr-xr-x 1 boincer umatlas      7986 Nov 29 20:39 run_atlas
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas       105 Nov 29 20:39 job.xml
[2025-12-01 03:31:12] -rw-r--r-- 3 boincer umatlas 378596162 Nov 29 20:39 EVNT.47531104._000036.pool.root.1
[2025-12-01 03:31:12] -rw-r--r-- 3 boincer umatlas 378596162 Nov 29 20:39 ATLAS.root_0
[2025-12-01 03:31:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 20:39 start_atlas.sh
[2025-12-01 03:31:12] drwxrwx--x 2 boincer umatlas      4096 Nov 29 20:39 shared
[2025-12-01 03:31:12] -rw-r--r-- 2 boincer umatlas    590123 Nov 29 20:39 input.tar.gz
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas         0 Nov 29 20:39 boinc_lockfile
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas      2879 Nov 30 10:29 pandaJob.out
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas        57 Nov 30 10:29 setup.sh.local
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas    991791 Nov 30 10:29 agis_schedconf.cvmfs.json
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas       534 Dec  1 03:20 boinc_task_state.xml
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas 700587717 Dec  1 03:30 HITS.47531111._000284.pool.root.1
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas        96 Dec  1 03:30 pilot_heartbeat.json
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas      1064 Dec  1 03:30 memory_monitor_summary.json
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas   1516240 Dec  1 03:30 agis_ddmendpoints.agis.ALL.json
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas   2285592 Dec  1 03:30 log.47531111._000284.job.log.tgz.1
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas     27039 Dec  1 03:30 heartbeat.json
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas      5954 Dec  1 03:31 init_data.xml
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 03:31 boinc_mmap_file
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas        30 Dec  1 03:31 wrapper_checkpoint.txt
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas      4738 Dec  1 03:31 pilotlog.txt
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas   8487706 Dec  1 03:31 log.47531111._000284.job.log.1
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas       353 Dec  1 03:31 output.list
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas       620 Dec  1 03:31 runtime_log
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas  10813440 Dec  1 03:31 result.tar.gz
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas      9423 Dec  1 03:31 runtime_log.err
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas       792 Dec  1 03:31 d0WMDmjPMj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVvOKDmwWMetn.diag
[2025-12-01 03:31:12] -rw-r--r-- 1 boincer umatlas     23363 Dec  1 03:31 stderr.txt
[2025-12-01 03:31:12] HITS file was successfully produced:
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas 700587717 Dec  1 03:30 shared/HITS.pool.root.1
[2025-12-01 03:31:12]  *** Contents of shared directory: ***
[2025-12-01 03:31:12] total 1065056
[2025-12-01 03:31:12] -rw-r--r-- 3 boincer umatlas 378596162 Nov 29 20:39 ATLAS.root_0
[2025-12-01 03:31:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 20:39 start_atlas.sh
[2025-12-01 03:31:12] -rw-r--r-- 2 boincer umatlas    590123 Nov 29 20:39 input.tar.gz
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas 700587717 Dec  1 03:30 HITS.pool.root.1
[2025-12-01 03:31:12] -rw------- 1 boincer umatlas  10813440 Dec  1 03:31 result.tar.gz
03:31:13 (28315): run_atlas exited; CPU time 468586.859280
03:31:13 (28315): called boinc_finish(0)

</stderr_txt>
]]>

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