Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:04:44 (3163742): wrapper (7.7.26015): starting
17:04:44 (3163742): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 17:04:44] Arguments: --nthreads 12
[2025-11-29 17:04:44] Threads: 12
[2025-11-29 17:04:44] Checking for CVMFS
[2025-11-29 17:04:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 17:04:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 17:04:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 17:04:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 17:04:45] 2.11.5.0 1167501 33134 261952 153462 0 456 31346120 45568001 14481 130560 0 291525141 99.746 216074536 22372 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-29 17:04:45] CVMFS is ok
[2025-11-29 17:04:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 17:04:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 17:04:45] Further information can be found at the LHC@home message board.
[2025-11-29 17:04:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 17:04:45] Checking for apptainer binary...
[2025-11-29 17:04:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 17:04:45] Running /usr/bin/apptainer --version
[2025-11-29 17:04:45] apptainer version 1.4.1-1.el9
[2025-11-29 17:04:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 17:04:45] wns0072.triumf.lcg
[2025-11-29 17:04:45] apptainer works
[2025-11-29 17:04:45] Set ATHENA_PROC_NUMBER=12
[2025-11-29 17:04:45] Set ATHENA_CORE_NUMBER=12
[2025-11-29 17:04:45] Starting ATLAS job with PandaID=6899134338
[2025-11-29 17:04:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 17:11:09]  *** The last 200 lines of the pilot log: ***
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 17:11:09] 2025-11-30 01:10:08,857 | WARNING  | wrong length of table data, x=[1764464754.0, 1764464815.0], y=[1528.0, 755984.0] (must be same and length>=4)
[2025-11-29 17:11:09] 2025-11-30 01:10:08,857 | INFO     | could have reported an average CPU frequency of 2590 MHz (4 samples)
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | ..............................
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . Timing measurements:
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . get job = 0 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . initial setup = 3 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . payload setup = 16 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . stage-in = 0 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . payload execution = 130 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . stage-out = 0 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . log creation = 0 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | ..............................
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6899134338/pilotlog.txt
[2025-11-29 17:11:09] 2025-11-30 01:10:08,872 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-29 17:11:09] - Log from pilotlog.txt -
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6899134338/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | INFO     | extracted standard info from prmon json
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 17:11:09] 2025-11-30 01:10:08,857 | WARNING  | wrong length of table data, x=[1764464754.0, 1764464815.0], y=[1528.0, 755984.0] (must be same and length>=4)
[2025-11-29 17:11:09] 2025-11-30 01:10:08,857 | INFO     | could have reported an average CPU frequency of 2590 MHz (4 samples)
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | ..............................
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . Timing measurements:
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . get job = 0 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . initial setup = 3 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . payload setup = 16 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . stage-in = 0 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . payload execution = 130 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . stage-out = 0 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . log creation = 0 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | ..............................
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6899134338/pilotlog.txt
[2025-11-29 17:11:09] 2025-11-30 01:10:08,872 | WARNING  | 
[2025-11-29 17:11:09] [begin log extracts]
[2025-11-29 17:11:09] - Log from pilotlog.txt -
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6899134338/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | INFO     | extracted standard info from prmon json
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 17:11:09] 2025-11-30 01:10:08,856 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 17:11:09] 2025-11-30 01:10:08,857 | WARNING  | wrong length of table data, x=[1764464754.0, 1764464815.0], y=[1528.0, 755984.0] (must be same and length>=4)
[2025-11-29 17:11:09] 2025-11-30 01:10:08,857 | INFO     | could have reported an average CPU frequency of 2590 MHz (4 samples)
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | ..............................
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . Timing measurements:
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . get job = 0 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . initial setup = 3 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . payload setup = 16 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . stage-in = 0 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . payload execution = 130 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . stage-out = 0 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | . log creation = 0 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | ..............................
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 17:11:09] 2025-11-30 01:10:08,858 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6899134338/pilotlog.txt
[2025-11-29 17:11:09] [end log extracts]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,873 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-29 17:11:09] 2025-11-30 01:10:08,873 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-29 17:11:09] 2025-11-30 01:10:08,937 | INFO     | 
[2025-11-29 17:11:09] 2025-11-30 01:10:08,937 | INFO     | job summary report
[2025-11-29 17:11:09] 2025-11-30 01:10:08,937 | INFO     | --------------------------------------------------
[2025-11-29 17:11:09] 2025-11-30 01:10:08,937 | INFO     | PanDA job id: 6899134338
[2025-11-29 17:11:09] 2025-11-30 01:10:08,937 | INFO     | task id: 47531058
[2025-11-29 17:11:09] 2025-11-30 01:10:08,937 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-29 17:07:46,096 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-29 17:11:09] 2025-11-30 01:10:08,937 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-29 17:11:09] 2025-11-30 01:10:08,937 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 17:11:09] 2025-11-30 01:10:08,937 | INFO     | pilot state: failed 
[2025-11-29 17:11:09] 2025-11-30 01:10:08,937 | INFO     | transexitcode: 65
[2025-11-29 17:11:09] 2025-11-30 01:10:08,937 | INFO     | exeerrorcode: 65
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | exitcode: 65
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | cpuconsumptiontime: 62 s
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | nevents: 0
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | neventsw: 0
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | pid: 3193002
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | pgrp: 3193002
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | corecount: 12
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | event service: False
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | sizes: {0: 2284450, 10: 2284712, 11: 2284740, 151: 2308294, 153: 2312584, 154: 2312612, 286: 2312906}
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | --------------------------------------------------
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | 
[2025-11-29 17:11:09] 2025-11-30 01:10:08,938 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,997 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,998 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,998 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,998 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,998 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 17:11:09] 2025-11-30 01:10:08,998 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,998 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 17:11:09] 2025-11-30 01:10:08,998 | INFO     | job 6899134338 has completed (purged errors)
[2025-11-29 17:11:09] 2025-11-30 01:10:08,998 | INFO     | overall cleanup function is called
[2025-11-29 17:11:09] 2025-11-30 01:10:10,008 | INFO     | --- collectZombieJob: --- 10, [3193002]
[2025-11-29 17:11:09] 2025-11-30 01:10:10,008 | INFO     | zombie collector waiting for pid 3193002
[2025-11-29 17:11:09] 2025-11-30 01:10:10,008 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 17:11:09] 2025-11-30 01:10:10,008 | INFO     | collected zombie processes
[2025-11-29 17:11:09] 2025-11-30 01:10:10,008 | INFO     | will attempt to kill all subprocesses of pid=3193002
[2025-11-29 17:11:09] 2025-11-30 01:10:10,534 | INFO     | process IDs to be killed: [3193002] (in reverse order)
[2025-11-29 17:11:09] 2025-11-30 01:10:10,916 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 17:11:09] 2025-11-30 01:10:10,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 17:11:09] 2025-11-30 01:10:10,964 | INFO     | did not find any defunct processes belonging to 3193002
[2025-11-29 17:11:09] 2025-11-30 01:10:10,978 | INFO     | did not find any defunct processes belonging to 3193002
[2025-11-29 17:11:09] 2025-11-30 01:10:10,983 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 17:11:09] 2025-11-30 01:10:10,984 | INFO     | ready for new job
[2025-11-29 17:11:09] 2025-11-30 01:10:10,984 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 17:11:09] 2025-11-30 01:10:10,985 | INFO     | ***************************************
[2025-11-29 17:11:09] 2025-11-30 01:10:10,985 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 17:11:09] 2025-11-30 01:10:10,985 | INFO     | ***************************************
[2025-11-29 17:11:09] 2025-11-30 01:10:10,985 | INFO     | 
[2025-11-29 17:11:09] 2025-11-30 01:10:10,990 | INFO     | architecture information:
[2025-11-29 17:11:09] 2025-11-30 01:10:10,990 | INFO     | executing command: cat /etc/os-release
[2025-11-29 17:11:09] 2025-11-30 01:10:11,002 | INFO     | cat /etc/os-release:
[2025-11-29 17:11:09] NAME="CentOS Linux"
[2025-11-29 17:11:09] VERSION="7 (Core)"
[2025-11-29 17:11:09] ID="centos"
[2025-11-29 17:11:09] ID_LIKE="rhel fedora"
[2025-11-29 17:11:09] VERSION_ID="7"
[2025-11-29 17:11:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 17:11:09] ANSI_COLOR="0;31"
[2025-11-29 17:11:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 17:11:09] HOME_URL="https://www.centos.org/"
[2025-11-29 17:11:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 17:11:09] 
[2025-11-29 17:11:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 17:11:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 17:11:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 17:11:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 17:11:09] 
[2025-11-29 17:11:09] 2025-11-30 01:10:11,002 | INFO     | ***************************************
[2025-11-29 17:11:09] 2025-11-30 01:10:11,506 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-29 17:11:09] 2025-11-30 01:10:11,600 | INFO     | sufficient remaining disk space (2086822477824 B)
[2025-11-29 17:11:09] 2025-11-30 01:10:11,600 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 17:11:09] 2025-11-30 01:10:11,601 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 17:11:09] 2025-11-30 01:10:11,601 | INFO     | update_server=False
[2025-11-29 17:11:09] 2025-11-30 01:10:11,601 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 17:11:09] 2025-11-30 01:10:11,653 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 17:11:09] 2025-11-30 01:10:12,031 | INFO     | all job control threads have been joined
[2025-11-29 17:11:09] 2025-11-30 01:10:12,149 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 17:11:09] 2025-11-30 01:10:12,149 | INFO     | aborting loop
[2025-11-29 17:11:09] 2025-11-30 01:10:12,607 | INFO     | [job] retrieve thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:12,645 | INFO     | all payload control threads have been joined
[2025-11-29 17:11:09] 2025-11-30 01:10:12,677 | INFO     | all data control threads have been joined
[2025-11-29 17:11:09] 2025-11-30 01:10:12,700 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:12,707 | INFO     | [data] copytool_in thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:13,037 | INFO     | [job] control thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:13,155 | INFO     | [job] job monitor thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:13,244 | INFO     | [payload] validate_post thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:13,297 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:13,634 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:13,651 | INFO     | [payload] control thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:13,660 | INFO     | [data] copytool_out thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:13,683 | INFO     | [data] control thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:13,865 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 17:11:09] 2025-11-30 01:10:13,875 | INFO     | [payload] failed_post thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:13,963 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 17:11:09] 2025-11-30 01:10:14,040 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:14,044 | INFO     | [job] validate thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:14,969 | INFO     | [job] queue monitor thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:17,874 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 17:11:09] 2025-11-30 01:10:41,163 | INFO     | PID=3171316 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 17:11:09] 2025-11-30 01:10:41,163 | INFO     | .. there are 27 such processes running
[2025-11-29 17:11:09] 2025-11-30 01:10:41,163 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 17:11:09] 2025-11-30 01:10:41,163 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 17:11:09] 2025-11-30 01:10:41,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 17:11:09] 2025-11-30 01:11:03,490 | INFO     | [monitor] cgroup control has ended
[2025-11-29 17:11:09] 2025-11-30 01:11:03,674 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898800609088)>', '<ExcThread(monitor, started 139898392655616)>']
[2025-11-29 17:11:09] 2025-11-30 01:11:04,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 17:11:09] 2025-11-30 01:11:04,338 | INFO     | [monitor] control thread has ended
[2025-11-29 17:11:09] 2025-11-30 01:11:08,699 | INFO     | all workflow threads have been joined
[2025-11-29 17:11:09] 2025-11-30 01:11:08,699 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 17:11:09] 2025-11-30 01:11:08,700 | INFO     | traces error code: 0
[2025-11-29 17:11:09] 2025-11-30 01:11:08,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 17:11:09] 2025-11-30 01:11:08,866 [wrapper] ==== pilot stdout END ====
[2025-11-29 17:11:09] 2025-11-30 01:11:08,868 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 17:11:09] 2025-11-30 01:11:08,869 [wrapper] pilotpid: 3171316
[2025-11-29 17:11:09] 2025-11-30 01:11:08,871 [wrapper] Pilot exit status: 0
[2025-11-29 17:11:09] 2025-11-30 01:11:08,976 [wrapper] pandaids: 6899134338
[2025-11-29 17:11:09] 2025-11-30 01:11:09,162 [wrapper] cleanup supervisor_pilot 3171322 3171317
[2025-11-29 17:11:09] 2025-11-30 01:11:09,165 [wrapper] Test setup, not cleaning
[2025-11-29 17:11:09] 2025-11-30 01:11:09,178 [wrapper] apfmon messages muted
[2025-11-29 17:11:09] 2025-11-30 01:11:09,188 [wrapper] ==== wrapper stdout END ====
[2025-11-29 17:11:09] 2025-11-30 01:11:09,200 [wrapper] ==== wrapper stderr END ====
[2025-11-29 17:11:09]  *** Error codes and diagnostics ***
[2025-11-29 17:11:09]     "exeErrorCode": 65,
[2025-11-29 17:11:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-29 17:11:09]     "pilotErrorCode": 1305,
[2025-11-29 17:11:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-29 17:11:09]  *** Listing of results directory ***
[2025-11-29 17:11:09] total 372240
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc    576529 Nov 28 14:41 pilot3.tar.gz
[2025-11-29 17:11:09] -rwx------. 1 boinc boinc     36292 Nov 28 14:46 runpilot2-wrapper.sh
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc      5112 Nov 28 14:49 queuedata.json
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc       100 Nov 29 17:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 17:11:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 17:04 run_atlas
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc       105 Nov 29 17:04 job.xml
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc      6597 Nov 29 17:04 init_data.xml
[2025-11-29 17:11:09] -rw-r--r--. 2 boinc boinc 376968514 Nov 29 17:04 EVNT.47531050._000511.pool.root.1
[2025-11-29 17:11:09] -rw-r--r--. 2 boinc boinc     15847 Nov 29 17:04 start_atlas.sh
[2025-11-29 17:11:09] drwxrwx--x. 2 boinc boinc      4096 Nov 29 17:04 shared
[2025-11-29 17:11:09] -rw-r--r--. 2 boinc boinc    590120 Nov 29 17:04 input.tar.gz
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc         0 Nov 29 17:04 boinc_lockfile
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc      2880 Nov 29 17:04 pandaJob.out
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc      2075 Nov 29 17:04 stderr.txt
[2025-11-29 17:11:09] -rw-------. 1 boinc boinc    991844 Nov 29 17:05 agis_schedconf.cvmfs.json
[2025-11-29 17:11:09] -rw-------. 1 boinc boinc   1516240 Nov 29 17:05 agis_ddmendpoints.agis.ALL.json
[2025-11-29 17:11:09] drwx------. 5 boinc boinc      4096 Nov 29 17:05 pilot3
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc       524 Nov 29 17:07 boinc_task_state.xml
[2025-11-29 17:11:09] -rw-------. 1 boinc boinc       998 Nov 29 17:07 memory_monitor_summary.json
[2025-11-29 17:11:09] -rw-------. 1 boinc boinc     50487 Nov 29 17:07 log.47531058._001282.job.log.tgz.1
[2025-11-29 17:11:09] -rw-------. 1 boinc boinc        95 Nov 29 17:10 pilot_heartbeat.json
[2025-11-29 17:11:09] -rw-------. 1 boinc boinc      9885 Nov 29 17:10 heartbeat.json
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc        23 Nov 29 17:11 wrapper_checkpoint.txt
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc      8192 Nov 29 17:11 boinc_mmap_file
[2025-11-29 17:11:09] -rw-------. 1 boinc boinc      4823 Nov 29 17:11 pilotlog.txt
[2025-11-29 17:11:09] -rw-------. 1 boinc boinc    105648 Nov 29 17:11 log.47531058._001282.job.log.1
[2025-11-29 17:11:09] -rw-------. 1 boinc boinc       186 Nov 29 17:11 output.list
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc       620 Nov 29 17:11 runtime_log
[2025-11-29 17:11:09] -rw-------. 1 boinc boinc    174080 Nov 29 17:11 result.tar.gz
[2025-11-29 17:11:09] -rw-r--r--. 1 boinc boinc      8636 Nov 29 17:11 runtime_log.err
[2025-11-29 17:11:09] -rw-------. 1 boinc boinc       644 Nov 29 17:11 NwWMDmZPMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFcLKDmeAEU9n.diag
[2025-11-29 17:11:09] No HITS result produced
[2025-11-29 17:11:09]  *** Contents of shared directory: ***
[2025-11-29 17:11:09] total 368908
[2025-11-29 17:11:09] -rw-r--r--. 2 boinc boinc 376968514 Nov 29 17:04 ATLAS.root_0
[2025-11-29 17:11:09] -rw-r--r--. 2 boinc boinc     15847 Nov 29 17:04 start_atlas.sh
[2025-11-29 17:11:09] -rw-r--r--. 2 boinc boinc    590120 Nov 29 17:04 input.tar.gz
[2025-11-29 17:11:09] -rw-------. 1 boinc boinc    174080 Nov 29 17:11 result.tar.gz
17:11:11 (3163742): run_atlas exited; CPU time 63.096244
17:11:11 (3163742): called boinc_finish(0)

</stderr_txt>
]]>

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