Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:06:03 (2570462): wrapper (7.7.26015): starting
17:06:03 (2570462): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 17:06:03] Arguments: --nthreads 8
[2025-11-29 17:06:03] Threads: 8
[2025-11-29 17:06:03] Checking for CVMFS
[2025-11-29 17:06:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 17:06:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 17:06:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 17:06:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 17:06:04] 2.11.3.0 3352839 33465 188592 153462 3 312 37812751 45568000 16529 130560 0 219469896 99.787 142660552 24396 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-29 17:06:04] CVMFS is ok
[2025-11-29 17:06:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 17:06:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 17:06:04] Further information can be found at the LHC@home message board.
[2025-11-29 17:06:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 17:06:04] Checking for apptainer binary...
[2025-11-29 17:06:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 17:06:04] Running /usr/bin/apptainer --version
[2025-11-29 17:06:04] apptainer version 1.4.1-1.el9
[2025-11-29 17:06:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 17:06:04] wns0010.triumf.lcg
[2025-11-29 17:06:04] apptainer works
[2025-11-29 17:06:04] Set ATHENA_PROC_NUMBER=8
[2025-11-29 17:06:04] Set ATHENA_CORE_NUMBER=8
[2025-11-29 17:06:04] Starting ATLAS job with PandaID=6897986746
[2025-11-29 17:06:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 17:13:39]  *** The last 200 lines of the pilot log: ***
[2025-11-29 17:13:39] 2025-11-30 01:13:05,812 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 17:13:39] 2025-11-30 01:13:05,814 | WARNING  | wrong length of table data, x=[1764464853.0, 1764464914.0, 1764464975.0, 1764465036.0], y=[2148.0, 664023.0, 326267.0, 785591.0] (must be same and length>=4)
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | ..............................
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . Timing measurements:
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . get job = 0 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . initial setup = 4 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . payload setup = 26 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . stage-in = 0 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . payload execution = 208 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . stage-out = 0 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . log creation = 0 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,816 | INFO     | ..............................
[2025-11-29 17:13:39] 2025-11-30 01:13:05,816 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 17:13:39] 2025-11-30 01:13:05,816 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897986746/pilotlog.txt
[2025-11-29 17:13:39] 2025-11-30 01:13:05,902 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-29 17:13:39] - Log from pilotlog.txt -
[2025-11-29 17:13:39] 2025-11-30 01:13:05,787 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897986746/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 17:13:39] 2025-11-30 01:13:05,788 | INFO     | extracted standard info from prmon json
[2025-11-29 17:13:39] 2025-11-30 01:13:05,811 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 17:13:39] 2025-11-30 01:13:05,811 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 17:13:39] 2025-11-30 01:13:05,812 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 17:13:39] 2025-11-30 01:13:05,812 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 17:13:39] 2025-11-30 01:13:05,814 | WARNING  | wrong length of table data, x=[1764464853.0, 1764464914.0, 1764464975.0, 1764465036.0], y=[2148.0, 664023.0, 326267.0, 785591.0] (must be same and length>=4)
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | ..............................
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . Timing measurements:
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . get job = 0 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . initial setup = 4 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . payload setup = 26 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . stage-in = 0 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . payload execution = 208 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . stage-out = 0 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . log creation = 0 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,816 | INFO     | ..............................
[2025-11-29 17:13:39] 2025-11-30 01:13:05,816 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 17:13:39] 2025-11-30 01:13:05,816 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897986746/pilotlog.txt
[2025-11-29 17:13:39] 2025-11-30 01:13:05,902 | WARNING  | 
[2025-11-29 17:13:39] [begin log extracts]
[2025-11-29 17:13:39] - Log from pilotlog.txt -
[2025-11-29 17:13:39] 2025-11-30 01:13:05,787 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897986746/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 17:13:39] 2025-11-30 01:13:05,788 | INFO     | extracted standard info from prmon json
[2025-11-29 17:13:39] 2025-11-30 01:13:05,811 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 17:13:39] 2025-11-30 01:13:05,811 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 17:13:39] 2025-11-30 01:13:05,812 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 17:13:39] 2025-11-30 01:13:05,812 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 17:13:39] 2025-11-30 01:13:05,814 | WARNING  | wrong length of table data, x=[1764464853.0, 1764464914.0, 1764464975.0, 1764465036.0], y=[2148.0, 664023.0, 326267.0, 785591.0] (must be same and length>=4)
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | ..............................
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . Timing measurements:
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . get job = 0 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . initial setup = 4 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . payload setup = 26 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . stage-in = 0 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . payload execution = 208 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . stage-out = 0 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,815 | INFO     | . log creation = 0 s
[2025-11-29 17:13:39] 2025-11-30 01:13:05,816 | INFO     | ..............................
[2025-11-29 17:13:39] 2025-11-30 01:13:05,816 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 17:13:39] 2025-11-30 01:13:05,816 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897986746/pilotlog.txt
[2025-11-29 17:13:39] [end log extracts]
[2025-11-29 17:13:39] 2025-11-30 01:13:05,903 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-29 17:13:39] 2025-11-30 01:13:05,903 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-29 17:13:39] 2025-11-30 01:13:06,390 | INFO     | 
[2025-11-29 17:13:39] 2025-11-30 01:13:06,390 | INFO     | job summary report
[2025-11-29 17:13:39] 2025-11-30 01:13:06,390 | INFO     | --------------------------------------------------
[2025-11-29 17:13:39] 2025-11-30 01:13:06,390 | INFO     | PanDA job id: 6897986746
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | task id: 47538121
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-29 17:10:41,731 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | pilot state: failed 
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | transexitcode: 65
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | exeerrorcode: 65
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | exitcode: 65
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | cpuconsumptiontime: 73 s
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | nevents: 0
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | neventsw: 0
[2025-11-29 17:13:39] 2025-11-30 01:13:06,391 | INFO     | pid: 2581539
[2025-11-29 17:13:39] 2025-11-30 01:13:06,392 | INFO     | pgrp: 2581539
[2025-11-29 17:13:39] 2025-11-30 01:13:06,392 | INFO     | corecount: 8
[2025-11-29 17:13:39] 2025-11-30 01:13:06,392 | INFO     | event service: False
[2025-11-29 17:13:39] 2025-11-30 01:13:06,392 | INFO     | sizes: {0: 2284221, 1: 2284305, 2: 2284504, 11: 2284766, 12: 2284794, 238: 2306282, 239: 2310572, 242: 2310600, 373: 2310766}
[2025-11-29 17:13:39] 2025-11-30 01:13:06,392 | INFO     | --------------------------------------------------
[2025-11-29 17:13:39] 2025-11-30 01:13:06,392 | INFO     | 
[2025-11-29 17:13:39] 2025-11-30 01:13:06,392 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-29 17:13:39] 2025-11-30 01:13:06,486 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,487 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,488 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,488 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,488 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,488 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 17:13:39] 2025-11-30 01:13:06,488 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,488 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 17:13:39] 2025-11-30 01:13:06,488 | INFO     | job 6897986746 has completed (purged errors)
[2025-11-29 17:13:39] 2025-11-30 01:13:06,488 | INFO     | overall cleanup function is called
[2025-11-29 17:13:39] 2025-11-30 01:13:07,509 | INFO     | --- collectZombieJob: --- 10, [2581539]
[2025-11-29 17:13:39] 2025-11-30 01:13:07,509 | INFO     | zombie collector waiting for pid 2581539
[2025-11-29 17:13:39] 2025-11-30 01:13:07,509 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 17:13:39] 2025-11-30 01:13:07,509 | INFO     | collected zombie processes
[2025-11-29 17:13:39] 2025-11-30 01:13:07,510 | INFO     | will attempt to kill all subprocesses of pid=2581539
[2025-11-29 17:13:39] 2025-11-30 01:13:08,458 | INFO     | process IDs to be killed: [2581539] (in reverse order)
[2025-11-29 17:13:39] 2025-11-30 01:13:08,652 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 17:13:39] 2025-11-30 01:13:08,653 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 17:13:39] 2025-11-30 01:13:08,662 | INFO     | did not find any defunct processes belonging to 2581539
[2025-11-29 17:13:39] 2025-11-30 01:13:08,670 | INFO     | did not find any defunct processes belonging to 2581539
[2025-11-29 17:13:39] 2025-11-30 01:13:08,670 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 17:13:39] 2025-11-30 01:13:08,671 | INFO     | ready for new job
[2025-11-29 17:13:39] 2025-11-30 01:13:08,671 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 17:13:39] 2025-11-30 01:13:08,672 | INFO     | ***************************************
[2025-11-29 17:13:39] 2025-11-30 01:13:08,672 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 17:13:39] 2025-11-30 01:13:08,672 | INFO     | ***************************************
[2025-11-29 17:13:39] 2025-11-30 01:13:08,672 | INFO     | 
[2025-11-29 17:13:39] 2025-11-30 01:13:08,673 | INFO     | architecture information:
[2025-11-29 17:13:39] 2025-11-30 01:13:08,674 | INFO     | executing command: cat /etc/os-release
[2025-11-29 17:13:39] 2025-11-30 01:13:08,688 | INFO     | cat /etc/os-release:
[2025-11-29 17:13:39] NAME="CentOS Linux"
[2025-11-29 17:13:39] VERSION="7 (Core)"
[2025-11-29 17:13:39] ID="centos"
[2025-11-29 17:13:39] ID_LIKE="rhel fedora"
[2025-11-29 17:13:39] VERSION_ID="7"
[2025-11-29 17:13:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 17:13:39] ANSI_COLOR="0;31"
[2025-11-29 17:13:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 17:13:39] HOME_URL="https://www.centos.org/"
[2025-11-29 17:13:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 17:13:39] 
[2025-11-29 17:13:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 17:13:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 17:13:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 17:13:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 17:13:39] 
[2025-11-29 17:13:39] 2025-11-30 01:13:08,688 | INFO     | ***************************************
[2025-11-29 17:13:39] 2025-11-30 01:13:09,202 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-29 17:13:39] 2025-11-30 01:13:09,292 | INFO     | sufficient remaining disk space (1289883746304 B)
[2025-11-29 17:13:39] 2025-11-30 01:13:09,293 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 17:13:39] 2025-11-30 01:13:09,293 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 17:13:39] 2025-11-30 01:13:09,293 | INFO     | update_server=False
[2025-11-29 17:13:39] 2025-11-30 01:13:09,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 17:13:39] 2025-11-30 01:13:09,299 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 17:13:39] 2025-11-30 01:13:09,354 | INFO     | all payload control threads have been joined
[2025-11-29 17:13:39] 2025-11-30 01:13:09,557 | INFO     | all data control threads have been joined
[2025-11-29 17:13:39] 2025-11-30 01:13:10,089 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 17:13:39] 2025-11-30 01:13:10,089 | INFO     | aborting loop
[2025-11-29 17:13:39] 2025-11-30 01:13:10,305 | INFO     | [job] retrieve thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:10,360 | INFO     | [payload] control thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:10,410 | INFO     | all job control threads have been joined
[2025-11-29 17:13:39] 2025-11-30 01:13:10,563 | INFO     | [data] control thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:10,713 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:10,881 | INFO     | [payload] validate_post thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:10,885 | INFO     | [job] validate thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:11,047 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:11,048 | INFO     | [data] copytool_in thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:11,064 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:11,095 | INFO     | [job] job monitor thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:11,290 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 17:13:39] 2025-11-30 01:13:11,306 | INFO     | [data] copytool_out thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:11,317 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:11,416 | INFO     | [job] control thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:11,421 | INFO     | [payload] failed_post thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:12,298 | INFO     | [job] queue monitor thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:12,486 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 17:13:39] 2025-11-30 01:13:16,511 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 17:13:39] 2025-11-30 01:13:26,749 | INFO     | [monitor] cgroup control has ended
[2025-11-29 17:13:39] 2025-11-30 01:13:26,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514002089792)>', '<ExcThread(monitor, started 140512807876352)>']
[2025-11-29 17:13:39] 2025-11-30 01:13:31,951 | INFO     | all workflow threads have been joined
[2025-11-29 17:13:39] 2025-11-30 01:13:31,951 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 17:13:39] 2025-11-30 01:13:31,952 | INFO     | traces error code: 0
[2025-11-29 17:13:39] 2025-11-30 01:13:31,952 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 17:13:39] 2025-11-30 01:13:38,349 | INFO     | PID=2574166 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 17:13:39] 2025-11-30 01:13:38,349 | INFO     | .. there are 33 such processes running
[2025-11-29 17:13:39] 2025-11-30 01:13:38,350 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 17:13:39] 2025-11-30 01:13:38,350 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 17:13:39] 2025-11-30 01:13:38,350 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 17:13:39] 2025-11-30 01:13:38,350 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 17:13:39] 2025-11-30 01:13:38,351 | INFO     | [monitor] control thread has ended
[2025-11-29 17:13:39] 2025-11-30 01:13:38,735 [wrapper] ==== pilot stdout END ====
[2025-11-29 17:13:39] 2025-11-30 01:13:38,745 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 17:13:39] 2025-11-30 01:13:38,766 [wrapper] pilotpid: 2574166
[2025-11-29 17:13:39] 2025-11-30 01:13:38,783 [wrapper] Pilot exit status: 0
[2025-11-29 17:13:39] 2025-11-30 01:13:38,900 [wrapper] pandaids: 6897986746
[2025-11-29 17:13:39] 2025-11-30 01:13:39,357 [wrapper] cleanup supervisor_pilot 2574172 2574167
[2025-11-29 17:13:39] 2025-11-30 01:13:39,404 [wrapper] Test setup, not cleaning
[2025-11-29 17:13:39] 2025-11-30 01:13:39,416 [wrapper] apfmon messages muted
[2025-11-29 17:13:39] 2025-11-30 01:13:39,435 [wrapper] ==== wrapper stdout END ====
[2025-11-29 17:13:39] 2025-11-30 01:13:39,437 [wrapper] ==== wrapper stderr END ====
[2025-11-29 17:13:39]  *** Error codes and diagnostics ***
[2025-11-29 17:13:39]     "exeErrorCode": 65,
[2025-11-29 17:13:39]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-29 17:13:39]     "pilotErrorCode": 1305,
[2025-11-29 17:13:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-29 17:13:39]  *** Listing of results directory ***
[2025-11-29 17:13:39] total 371384
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc    576529 Nov 28 14:41 pilot3.tar.gz
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc      5112 Nov 28 14:43 queuedata.json
[2025-11-29 17:13:39] -rwx------. 1 boinc boinc     36292 Nov 28 14:44 runpilot2-wrapper.sh
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc       100 Nov 29 17:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 17:13:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 17:06 run_atlas
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc       105 Nov 29 17:06 job.xml
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc      6447 Nov 29 17:06 init_data.xml
[2025-11-29 17:13:39] -rw-r--r--. 2 boinc boinc 376057690 Nov 29 17:06 EVNT.47528880._000084.pool.root.1
[2025-11-29 17:13:39] -rw-r--r--. 2 boinc boinc     15847 Nov 29 17:06 start_atlas.sh
[2025-11-29 17:13:39] drwxrwx--x. 2 boinc boinc      4096 Nov 29 17:06 shared
[2025-11-29 17:13:39] -rw-r--r--. 2 boinc boinc    590124 Nov 29 17:06 input.tar.gz
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc         0 Nov 29 17:06 boinc_lockfile
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc      2880 Nov 29 17:06 pandaJob.out
[2025-11-29 17:13:39] -rw-------. 1 boinc boinc    991844 Nov 29 17:06 agis_schedconf.cvmfs.json
[2025-11-29 17:13:39] -rw-------. 1 boinc boinc   1516240 Nov 29 17:06 agis_ddmendpoints.agis.ALL.json
[2025-11-29 17:13:39] drwx------. 5 boinc boinc      4096 Nov 29 17:06 pilot3
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc       525 Nov 29 17:09 boinc_task_state.xml
[2025-11-29 17:13:39] -rw-------. 1 boinc boinc       995 Nov 29 17:10 memory_monitor_summary.json
[2025-11-29 17:13:39] -rw-------. 1 boinc boinc     50495 Nov 29 17:10 log.47538121._000836.job.log.tgz.1
[2025-11-29 17:13:39] -rw-------. 1 boinc boinc      9255 Nov 29 17:13 heartbeat.json
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc        23 Nov 29 17:13 wrapper_checkpoint.txt
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc      8192 Nov 29 17:13 boinc_mmap_file
[2025-11-29 17:13:39] -rw-------. 1 boinc boinc        95 Nov 29 17:13 pilot_heartbeat.json
[2025-11-29 17:13:39] -rw-------. 1 boinc boinc       823 Nov 29 17:13 pilotlog.txt
[2025-11-29 17:13:39] -rw-------. 1 boinc boinc    116842 Nov 29 17:13 log.47538121._000836.job.log.1
[2025-11-29 17:13:39] -rw-------. 1 boinc boinc       186 Nov 29 17:13 output.list
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc       620 Nov 29 17:13 runtime_log
[2025-11-29 17:13:39] -rw-------. 1 boinc boinc    184320 Nov 29 17:13 result.tar.gz
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc      8634 Nov 29 17:13 runtime_log.err
[2025-11-29 17:13:39] -rw-------. 1 boinc boinc       644 Nov 29 17:13 DfNKDmSNMj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1qOKDmj8Ekmm.diag
[2025-11-29 17:13:39] -rw-r--r--. 1 boinc boinc     22638 Nov 29 17:13 stderr.txt
[2025-11-29 17:13:39] No HITS result produced
[2025-11-29 17:13:39]  *** Contents of shared directory: ***
[2025-11-29 17:13:39] total 368024
[2025-11-29 17:13:39] -rw-r--r--. 2 boinc boinc 376057690 Nov 29 17:06 ATLAS.root_0
[2025-11-29 17:13:39] -rw-r--r--. 2 boinc boinc     15847 Nov 29 17:06 start_atlas.sh
[2025-11-29 17:13:39] -rw-r--r--. 2 boinc boinc    590124 Nov 29 17:06 input.tar.gz
[2025-11-29 17:13:39] -rw-------. 1 boinc boinc    184320 Nov 29 17:13 result.tar.gz
17:13:41 (2570462): run_atlas exited; CPU time 77.228736
17:13:41 (2570462): called boinc_finish(0)

</stderr_txt>
]]>

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