Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:35:51 (30003): wrapper (7.7.26015): starting
19:35:51 (30003): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 19:35:51] Arguments: --nthreads 8
[2025-11-29 19:35:51] Threads: 8
[2025-11-29 19:35:51] Checking for CVMFS
[2025-11-29 19:35:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 19:35:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 19:35:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 19:35:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 19:35:52] 2.11.2.0 7040 122730 144296 153462 3 81 18272822 18432001 1885 130560 0 89334738 99.975 5056483 31387 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 19:35:52] CVMFS is ok
[2025-11-29 19:35:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 19:35:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 19:35:52] Further information can be found at the LHC@home message board.
[2025-11-29 19:35:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 19:35:52] Checking for apptainer binary...
[2025-11-29 19:35:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 19:35:52] Running /usr/bin/apptainer --version
[2025-11-29 19:35:52] apptainer version 1.3.2-1.el7
[2025-11-29 19:35:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 19:35:52] c-206-7.aglt2.org
[2025-11-29 19:35:52] apptainer works
[2025-11-29 19:35:52] Set ATHENA_PROC_NUMBER=8
[2025-11-29 19:35:52] Set ATHENA_CORE_NUMBER=8
[2025-11-29 19:35:52] Starting ATLAS job with PandaID=6897959519
[2025-11-29 19:35:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:20:05 (30003): BOINC client no longer exists - exiting
10:20:05 (30003): timer handler: client dead, exiting
10:29:09 (28314): wrapper (7.7.26015): starting
10:29:09 (28314): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 10:29:09] Arguments: --nthreads 8
[2025-11-30 10:29:09] Threads: 8
[2025-11-30 10:29:09] This job has been restarted, cleaning up previous attempt
[2025-11-30 10:29:09] Checking for CVMFS
[2025-11-30 10:29:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 10:29:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 10:29:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 10:29:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 10:29:09] 2.11.2.0 7040 123624 143072 153485 3 69 18376587 18432001 1 130560 0 90074073 99.975 5089359 31412 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 10:29:09] CVMFS is ok
[2025-11-30 10:29:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 10:29:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 10:29:09] Further information can be found at the LHC@home message board.
[2025-11-30 10:29:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 10:29:09] Checking for apptainer binary...
[2025-11-30 10:29:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 10:29:09] Running /usr/bin/apptainer --version
[2025-11-30 10:29:09] apptainer version 1.3.2-1.el7
[2025-11-30 10:29:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 10:29:10] c-206-7.aglt2.org
[2025-11-30 10:29:10] apptainer works
[2025-11-30 10:29:10] Set ATHENA_PROC_NUMBER=8
[2025-11-30 10:29:10] Set ATHENA_CORE_NUMBER=8
[2025-11-30 10:29:10] Starting ATLAS job with PandaID=6897959519
[2025-11-30 10:29:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 03:23:09]  *** The last 200 lines of the pilot log: ***
[2025-12-01 03:23:09] 2025-12-01 08:22:36,464 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:23:09] 2025-12-01 08:22:36,542 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 03:23:09] 2025-12-01 08:22:36,545 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2400.25
[2025-12-01 03:23:09] 2025-12-01 08:22:36,548 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897959519/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 03:23:09] 2025-12-01 08:22:36,548 | INFO     | extracted standard info from prmon json
[2025-12-01 03:23:09] 2025-12-01 08:22:36,548 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 03:23:09] 2025-12-01 08:22:36,548 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 03:23:09] 2025-12-01 08:22:36,561 | INFO     | fitting pss+swap vs Time
[2025-12-01 03:23:09] 2025-12-01 08:22:36,562 | INFO     | sum of square deviations: 306377457901.46985
[2025-12-01 03:23:09] 2025-12-01 08:22:36,585 | INFO     | sum of deviations: 2026348687774.9905
[2025-12-01 03:23:09] 2025-12-01 08:22:36,585 | INFO     | mean x: 1764546943.180723
[2025-12-01 03:23:09] 2025-12-01 08:22:36,585 | INFO     | mean y: 3372929.9889558232
[2025-12-01 03:23:09] 2025-12-01 08:22:36,585 | INFO     | intersect: -11667157295.447954
[2025-12-01 03:23:09] 2025-12-01 08:22:36,586 | INFO     | chi2: 4.717118925945511
[2025-12-01 03:23:09] 2025-12-01 08:22:36,587 | INFO     | sum of square deviations: 301786676284.142
[2025-12-01 03:23:09] 2025-12-01 08:22:36,604 | INFO     | sum of deviations: 2338378178735.658
[2025-12-01 03:23:09] 2025-12-01 08:22:36,604 | INFO     | mean x: 1764546790.6841574
[2025-12-01 03:23:09] 2025-12-01 08:22:36,604 | INFO     | mean y: 3383287.462159435
[2025-12-01 03:23:09] 2025-12-01 08:22:36,604 | INFO     | intersect: -13669114655.452124
[2025-12-01 03:23:09] 2025-12-01 08:22:36,605 | INFO     | chi2: 2.552214758212387
[2025-12-01 03:23:09] 2025-12-01 08:22:36,605 | INFO     | current chi2=2.552214758212387 (change=45.894627668289814 %)
[2025-12-01 03:23:09] 2025-12-01 08:22:36,606 | INFO     | sum of square deviations: 297241807568.40564
[2025-12-01 03:23:09] 2025-12-01 08:22:36,623 | INFO     | sum of deviations: 2338730612649.978
[2025-12-01 03:23:09] 2025-12-01 08:22:36,623 | INFO     | mean x: 1764546638.1845841
[2025-12-01 03:23:09] 2025-12-01 08:22:36,623 | INFO     | mean y: 3383296.3407707913
[2025-12-01 03:23:09] 2025-12-01 08:22:36,623 | INFO     | intersect: -13880260037.449587
[2025-12-01 03:23:09] 2025-12-01 08:22:36,624 | INFO     | chi2: 2.5103304123429515
[2025-12-01 03:23:09] 2025-12-01 08:22:36,624 | INFO     | current chi2=2.5103304123429515 (change=1.641098020245437 %)
[2025-12-01 03:23:09] 2025-12-01 08:22:36,624 | INFO     | right removable region: 985
[2025-12-01 03:23:09] 2025-12-01 08:22:36,625 | INFO     | sum of square deviations: 301786262704.14215
[2025-12-01 03:23:09] 2025-12-01 08:22:36,642 | INFO     | sum of deviations: 1704755373540.6467
[2025-12-01 03:23:09] 2025-12-01 08:22:36,642 | INFO     | mean x: 1764547095.6841574
[2025-12-01 03:23:09] 2025-12-01 08:22:36,642 | INFO     | mean y: 3383598.270433905
[2025-12-01 03:23:09] 2025-12-01 08:22:36,642 | INFO     | intersect: -9964336987.414865
[2025-12-01 03:23:09] 2025-12-01 08:22:36,643 | INFO     | chi2: 2.397348919796844
[2025-12-01 03:23:09] 2025-12-01 08:22:36,643 | INFO     | current chi2=2.397348919796844 (change=49.17768753696805 %)
[2025-12-01 03:23:09] 2025-12-01 08:22:36,644 | INFO     | sum of square deviations: 297241342382.4059
[2025-12-01 03:23:09] 2025-12-01 08:22:36,661 | INFO     | sum of deviations: 1625232606703.9785
[2025-12-01 03:23:09] 2025-12-01 08:22:36,661 | INFO     | mean x: 1764547248.1845841
[2025-12-01 03:23:09] 2025-12-01 08:22:36,661 | INFO     | mean y: 3386265.906693712
[2025-12-01 03:23:09] 2025-12-01 08:22:36,661 | INFO     | intersect: -9644665047.661566
[2025-12-01 03:23:09] 2025-12-01 08:22:36,662 | INFO     | chi2: 2.3392445812391154
[2025-12-01 03:23:09] 2025-12-01 08:22:36,662 | INFO     | current chi2=2.3392445812391154 (change=2.423691356644595 %)
[2025-12-01 03:23:09] 2025-12-01 08:22:36,663 | INFO     | left removable region: 20
[2025-12-01 03:23:09] 2025-12-01 08:22:36,663 | INFO     | sum of square deviations: 278651280575.48804
[2025-12-01 03:23:09] 2025-12-01 08:22:36,679 | INFO     | sum of deviations: 1827563606102.5034
[2025-12-01 03:23:09] 2025-12-01 08:22:36,680 | INFO     | mean x: 1764547217.6870465
[2025-12-01 03:23:09] 2025-12-01 08:22:36,680 | INFO     | mean y: 3400433.0082901553
[2025-12-01 03:23:09] 2025-12-01 08:22:36,680 | INFO     | intersect: -11569567290.786747
[2025-12-01 03:23:09] 2025-12-01 08:22:36,681 | INFO     | chi2: 0.09252249742726575
[2025-12-01 03:23:09] 2025-12-01 08:22:36,681 | INFO     | current memory leak: 6.56 B/s (using 965 data points, chi2=0.09)
[2025-12-01 03:23:09] 2025-12-01 08:22:36,681 | INFO     | could have reported an average CPU frequency of 2575 MHz (37 samples)
[2025-12-01 03:23:09] 2025-12-01 08:22:36,682 | INFO     | ..............................
[2025-12-01 03:23:09] 2025-12-01 08:22:36,682 | INFO     | . Timing measurements:
[2025-12-01 03:23:09] 2025-12-01 08:22:36,682 | INFO     | . get job = 0 s
[2025-12-01 03:23:09] 2025-12-01 08:22:36,682 | INFO     | . initial setup = 2 s
[2025-12-01 03:23:09] 2025-12-01 08:22:36,682 | INFO     | . payload setup = 11 s
[2025-12-01 03:23:09] 2025-12-01 08:22:36,682 | INFO     | . stage-in = 0 s
[2025-12-01 03:23:09] 2025-12-01 08:22:36,682 | INFO     | . payload execution = 60753 s
[2025-12-01 03:23:09] 2025-12-01 08:22:36,682 | INFO     | . stage-out = 3 s
[2025-12-01 03:23:09] 2025-12-01 08:22:36,682 | INFO     | . log creation = 0 s
[2025-12-01 03:23:09] 2025-12-01 08:22:36,683 | INFO     | ..............................
[2025-12-01 03:23:09] 2025-12-01 08:22:36,757 | INFO     | 
[2025-12-01 03:23:09] 2025-12-01 08:22:36,757 | INFO     | job summary report
[2025-12-01 03:23:09] 2025-12-01 08:22:36,758 | INFO     | --------------------------------------------------
[2025-12-01 03:23:09] 2025-12-01 08:22:36,758 | INFO     | PanDA job id: 6897959519
[2025-12-01 03:23:09] 2025-12-01 08:22:36,758 | INFO     | task id: 47538121
[2025-12-01 03:23:09] 2025-12-01 08:22:36,758 | INFO     | errors: (none)
[2025-12-01 03:23:09] 2025-12-01 08:22:36,758 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 03:23:09] 2025-12-01 08:22:36,758 | INFO     | pilot state: finished 
[2025-12-01 03:23:09] 2025-12-01 08:22:36,758 | INFO     | transexitcode: 0
[2025-12-01 03:23:09] 2025-12-01 08:22:36,758 | INFO     | exeerrorcode: 0
[2025-12-01 03:23:09] 2025-12-01 08:22:36,758 | INFO     | exeerrordiag: 
[2025-12-01 03:23:09] 2025-12-01 08:22:36,758 | INFO     | exitcode: 0
[2025-12-01 03:23:09] 2025-12-01 08:22:36,758 | INFO     | exitmsg: OK
[2025-12-01 03:23:09] 2025-12-01 08:22:36,759 | INFO     | cpuconsumptiontime: 468705 s
[2025-12-01 03:23:09] 2025-12-01 08:22:36,759 | INFO     | nevents: 1000
[2025-12-01 03:23:09] 2025-12-01 08:22:36,759 | INFO     | neventsw: 0
[2025-12-01 03:23:09] 2025-12-01 08:22:36,759 | INFO     | pid: 1263
[2025-12-01 03:23:09] 2025-12-01 08:22:36,759 | INFO     | pgrp: 1263
[2025-12-01 03:23:09] 2025-12-01 08:22:36,759 | INFO     | corecount: 8
[2025-12-01 03:23:09] 2025-12-01 08:22:36,759 | INFO     | event service: False
[2025-12-01 03:23:09] 2025-12-01 08:22:36,759 | INFO     | sizes: {0: 2284274, 1: 2284473, 5: 2284735, 11: 2284791, 60767: 2355583, 60771: 2364577, 60772: 2364761, 60777: 2365007}
[2025-12-01 03:23:09] 2025-12-01 08:22:36,759 | INFO     | --------------------------------------------------
[2025-12-01 03:23:09] 2025-12-01 08:22:36,759 | INFO     | 
[2025-12-01 03:23:09] 2025-12-01 08:22:36,760 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-01 03:23:09] 2025-12-01 08:22:36,772 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,773 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,773 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,773 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,773 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,773 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,773 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,773 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,773 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,774 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,774 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,774 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,774 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,774 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,774 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,774 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,774 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,774 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 03:23:09] 2025-12-01 08:22:36,774 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,775 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 03:23:09] 2025-12-01 08:22:36,775 | INFO     | job 6897959519 has completed (purged errors)
[2025-12-01 03:23:09] 2025-12-01 08:22:36,775 | INFO     | overall cleanup function is called
[2025-12-01 03:23:09] 2025-12-01 08:22:37,788 | INFO     | --- collectZombieJob: --- 10, [1263]
[2025-12-01 03:23:09] 2025-12-01 08:22:37,788 | INFO     | zombie collector waiting for pid 1263
[2025-12-01 03:23:09] 2025-12-01 08:22:37,788 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 03:23:09] 2025-12-01 08:22:37,788 | INFO     | collected zombie processes
[2025-12-01 03:23:09] 2025-12-01 08:22:37,788 | INFO     | will attempt to kill all subprocesses of pid=1263
[2025-12-01 03:23:09] 2025-12-01 08:22:37,959 | INFO     | process IDs to be killed: [1263] (in reverse order)
[2025-12-01 03:23:09] 2025-12-01 08:22:38,018 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 03:23:09] 2025-12-01 08:22:38,018 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 03:23:09] 2025-12-01 08:22:38,024 | INFO     | did not find any defunct processes belonging to 1263
[2025-12-01 03:23:09] 2025-12-01 08:22:38,027 | INFO     | did not find any defunct processes belonging to 1263
[2025-12-01 03:23:09] 2025-12-01 08:22:38,028 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 03:23:09] 2025-12-01 08:22:38,028 | INFO     | ready for new job
[2025-12-01 03:23:09] 2025-12-01 08:22:38,028 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 03:23:09] 2025-12-01 08:22:38,031 | INFO     | ***************************************
[2025-12-01 03:23:09] 2025-12-01 08:22:38,031 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 03:23:09] 2025-12-01 08:22:38,032 | INFO     | ***************************************
[2025-12-01 03:23:09] 2025-12-01 08:22:38,032 | INFO     | 
[2025-12-01 03:23:09] 2025-12-01 08:22:38,032 | INFO     | architecture information:
[2025-12-01 03:23:09] 2025-12-01 08:22:38,033 | INFO     | executing command: cat /etc/os-release
[2025-12-01 03:23:09] 2025-12-01 08:22:38,042 | INFO     | cat /etc/os-release:
[2025-12-01 03:23:09] NAME="CentOS Linux"
[2025-12-01 03:23:09] VERSION="7 (Core)"
[2025-12-01 03:23:09] ID="centos"
[2025-12-01 03:23:09] ID_LIKE="rhel fedora"
[2025-12-01 03:23:09] VERSION_ID="7"
[2025-12-01 03:23:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 03:23:09] ANSI_COLOR="0;31"
[2025-12-01 03:23:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 03:23:09] HOME_URL="https://www.centos.org/"
[2025-12-01 03:23:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 03:23:09] 
[2025-12-01 03:23:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 03:23:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 03:23:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 03:23:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 03:23:09] 
[2025-12-01 03:23:09] 2025-12-01 08:22:38,043 | INFO     | ***************************************
[2025-12-01 03:23:09] 2025-12-01 08:22:38,545 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-01 03:23:09] 2025-12-01 08:22:38,561 | INFO     | sufficient remaining disk space (25514999808 B)
[2025-12-01 03:23:09] 2025-12-01 08:22:38,561 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 03:23:09] 2025-12-01 08:22:38,562 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 03:23:09] 2025-12-01 08:22:38,562 | INFO     | update_server=False
[2025-12-01 03:23:09] 2025-12-01 08:22:38,562 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 03:23:09] 2025-12-01 08:22:38,562 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 03:23:09] 2025-12-01 08:22:38,563 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 03:23:09] 2025-12-01 08:22:38,668 | INFO     | all data control threads have been joined
[2025-12-01 03:23:09] 2025-12-01 08:22:38,772 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 03:23:09] 2025-12-01 08:22:38,873 | INFO     | all payload control threads have been joined
[2025-12-01 03:23:09] 2025-12-01 08:22:38,967 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-01 03:23:09] 2025-12-01 08:22:38,967 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-01 03:23:09] 2025-12-01 08:22:38,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 03:23:09] 2025-12-01 08:22:38,968 | INFO     | will abort loop
[2025-12-01 03:23:09] 2025-12-01 08:22:39,568 | INFO     | [job] retrieve thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:39,568 | INFO     | [job] queue monitor thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:39,641 | INFO     | [job] validate thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:39,661 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:39,674 | INFO     | [data] control thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:39,774 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:39,782 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:39,878 | INFO     | [payload] control thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:39,973 | INFO     | [job] job monitor thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:40,132 | INFO     | all job control threads have been joined
[2025-12-01 03:23:09] 2025-12-01 08:22:40,223 | INFO     | [payload] failed_post thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:40,302 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:40,459 | INFO     | [data] copytool_in thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:40,777 | INFO     | [data] copytool_out thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:40,940 | INFO     | [payload] validate_post thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:41,138 | INFO     | [job] control thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:22:42,570 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 03:23:09] 2025-12-01 08:23:04,028 | INFO     | [monitor] cgroup control has ended
[2025-12-01 03:23:09] 2025-12-01 08:23:04,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139657442481984)>', '<ExcThread(monitor, started 139656490379008)>']
[2025-12-01 03:23:09] 2025-12-01 08:23:08,082 | INFO     | PID=7165 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 03:23:09] 2025-12-01 08:23:08,083 | INFO     | .. there are 3 such processes running
[2025-12-01 03:23:09] 2025-12-01 08:23:08,083 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 03:23:09] 2025-12-01 08:23:08,083 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 03:23:09] 2025-12-01 08:23:08,083 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 03:23:09] 2025-12-01 08:23:08,084 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 03:23:09] 2025-12-01 08:23:08,084 | INFO     | [monitor] control thread has ended
[2025-12-01 03:23:09] 2025-12-01 08:23:09,331 | INFO     | all workflow threads have been joined
[2025-12-01 03:23:09] 2025-12-01 08:23:09,331 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 03:23:09] 2025-12-01 08:23:09,331 | INFO     | traces error code: 0
[2025-12-01 03:23:09] 2025-12-01 08:23:09,332 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 03:23:09] 2025-12-01 08:23:09,445 [wrapper] ==== pilot stdout END ====
[2025-12-01 03:23:09] 2025-12-01 08:23:09,447 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 03:23:09] 2025-12-01 08:23:09,449 [wrapper] pilotpid: 7165
[2025-12-01 03:23:09] 2025-12-01 08:23:09,451 [wrapper] Pilot exit status: 0
[2025-12-01 03:23:09] 2025-12-01 08:23:09,458 [wrapper] pandaids: 6897959519 6897959519
[2025-12-01 03:23:09] 2025-12-01 08:23:09,487 [wrapper] cleanup supervisor_pilot 12731 7166
[2025-12-01 03:23:09] 2025-12-01 08:23:09,493 [wrapper] Test setup, not cleaning
[2025-12-01 03:23:09] 2025-12-01 08:23:09,496 [wrapper] apfmon messages muted
[2025-12-01 03:23:09] 2025-12-01 08:23:09,498 [wrapper] ==== wrapper stdout END ====
[2025-12-01 03:23:09] 2025-12-01 08:23:09,500 [wrapper] ==== wrapper stderr END ====
[2025-12-01 03:23:09]  *** Error codes and diagnostics ***
[2025-12-01 03:23:09]     "exeErrorCode": 0,
[2025-12-01 03:23:09]     "exeErrorDiag": "",
[2025-12-01 03:23:09]     "pilotErrorCode": 0,
[2025-12-01 03:23:09]     "pilotErrorDiag": "",
[2025-12-01 03:23:09]  *** Listing of results directory ***
[2025-12-01 03:23:09] total 1439752
[2025-12-01 03:23:09] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas    576529 Nov 28 17:41 pilot3.tar.gz
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas      5112 Nov 28 17:43 queuedata.json
[2025-12-01 03:23:09] -rwx------ 1 boincer umatlas     36292 Nov 28 17:44 runpilot2-wrapper.sh
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas       100 Nov 29 19:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 03:23:09] -rwxr-xr-x 1 boincer umatlas      7986 Nov 29 19:35 run_atlas
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas       105 Nov 29 19:35 job.xml
[2025-12-01 03:23:09] -rw-r--r-- 3 boincer umatlas 378286511 Nov 29 19:35 EVNT.47528880._000082.pool.root.1
[2025-12-01 03:23:09] -rw-r--r-- 3 boincer umatlas 378286511 Nov 29 19:35 ATLAS.root_0
[2025-12-01 03:23:09] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 19:35 start_atlas.sh
[2025-12-01 03:23:09] drwxrwx--x 2 boincer umatlas      4096 Nov 29 19:35 shared
[2025-12-01 03:23:09] -rw-r--r-- 2 boincer umatlas    590124 Nov 29 19:35 input.tar.gz
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas         0 Nov 29 19:35 boinc_lockfile
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas      2877 Nov 30 10:29 pandaJob.out
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas        57 Nov 30 10:29 setup.sh.local
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas    991791 Nov 30 10:29 agis_schedconf.cvmfs.json
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas       534 Dec  1 03:15 boinc_task_state.xml
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas      5954 Dec  1 03:20 init_data.xml
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas 692363020 Dec  1 03:22 HITS.47538121._000811.pool.root.1
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas      1063 Dec  1 03:22 memory_monitor_summary.json
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas        96 Dec  1 03:22 pilot_heartbeat.json
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas   1516240 Dec  1 03:22 agis_ddmendpoints.agis.ALL.json
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas   2288683 Dec  1 03:22 log.47538121._000811.job.log.tgz.1
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas     27057 Dec  1 03:22 heartbeat.json
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas        30 Dec  1 03:22 wrapper_checkpoint.txt
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 03:22 boinc_mmap_file
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas      5006 Dec  1 03:23 pilotlog.txt
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas   8418321 Dec  1 03:23 log.47538121._000811.job.log.1
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas       353 Dec  1 03:23 output.list
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas       620 Dec  1 03:23 runtime_log
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas  10741760 Dec  1 03:23 result.tar.gz
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas      9423 Dec  1 03:23 runtime_log.err
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas       792 Dec  1 03:23 dlqMDmRNMj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgqOKDme1Wjim.diag
[2025-12-01 03:23:09] -rw-r--r-- 1 boincer umatlas     23545 Dec  1 03:23 stderr.txt
[2025-12-01 03:23:09] HITS file was successfully produced:
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas 692363020 Dec  1 03:22 shared/HITS.pool.root.1
[2025-12-01 03:23:09]  *** Contents of shared directory: ***
[2025-12-01 03:23:09] total 1056652
[2025-12-01 03:23:09] -rw-r--r-- 3 boincer umatlas 378286511 Nov 29 19:35 ATLAS.root_0
[2025-12-01 03:23:09] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 19:35 start_atlas.sh
[2025-12-01 03:23:09] -rw-r--r-- 2 boincer umatlas    590124 Nov 29 19:35 input.tar.gz
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas 692363020 Dec  1 03:22 HITS.pool.root.1
[2025-12-01 03:23:09] -rw------- 1 boincer umatlas  10741760 Dec  1 03:23 result.tar.gz
03:23:11 (28314): run_atlas exited; CPU time 467398.884371
03:23:11 (28314): called boinc_finish(0)

</stderr_txt>
]]>

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