Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:05:19 (12133): wrapper (7.7.26015): starting
00:05:19 (12133): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 00:05:19] Arguments: --nthreads 8
[2025-12-02 00:05:19] Threads: 8
[2025-12-02 00:05:19] Checking for CVMFS
[2025-12-02 00:05:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 00:05:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 00:05:21] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 00:05:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 00:05:22] 2.11.2.0 20077 293211 140504 153534 3 85 13955984 25165825 2504 130560 10 139964065 99.873 79142280 2571 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 00:05:22] CVMFS is ok
[2025-12-02 00:05:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 00:05:22] Checking for apptainer binary...
[2025-12-02 00:05:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 00:05:22] Running /usr/bin/apptainer --version
[2025-12-02 00:05:22] apptainer version 1.3.2-1.el7
[2025-12-02 00:05:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 00:05:53] cg-vwn315.simple-grid.lan
[2025-12-02 00:05:53] apptainer works
[2025-12-02 00:05:54] Set ATHENA_PROC_NUMBER=8
[2025-12-02 00:05:54] Set ATHENA_CORE_NUMBER=8
[2025-12-02 00:05:54] Starting ATLAS job with PandaID=6900800257
[2025-12-02 00:05:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 23:40:17]  *** The last 200 lines of the pilot log: ***
[2025-12-02 23:40:17] 2025-12-02 22:39:06,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 23:40:17] 2025-12-02 22:39:06,948 | INFO     | time since job start (84567s) is within the limit (172800.0s)
[2025-12-02 23:40:17] 2025-12-02 22:39:08,955 | INFO     | time since job start (84569s) is within the limit (172800.0s)
[2025-12-02 23:40:17] 2025-12-02 22:39:09,088 | INFO     | monitor loop #5690: job 0:6900800257 is in state 'finished'
[2025-12-02 23:40:17] 2025-12-02 22:39:09,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 23:40:17] 2025-12-02 22:39:10,965 | INFO     | time since job start (84571s) is within the limit (172800.0s)
[2025-12-02 23:40:17] 2025-12-02 22:39:11,592 | INFO     | monitor loop #5691: job 0:6900800257 is in state 'finished'
[2025-12-02 23:40:17] 2025-12-02 22:39:11,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 23:40:17] 2025-12-02 22:39:12,972 | INFO     | time since job start (84573s) is within the limit (172800.0s)
[2025-12-02 23:40:17] 2025-12-02 22:39:13,342 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 23:40:17] 2025-12-02 22:39:13,343 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-02 23:40:17] 2025-12-02 22:39:13,345 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-6900800257/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 23:40:17] 2025-12-02 22:39:13,345 | INFO     | extracted standard info from prmon json
[2025-12-02 23:40:17] 2025-12-02 22:39:13,345 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 23:40:17] 2025-12-02 22:39:13,345 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 23:40:17] 2025-12-02 22:39:13,396 | INFO     | fitting pss+swap vs Time
[2025-12-02 23:40:17] 2025-12-02 22:39:13,398 | INFO     | sum of square deviations: 809617219354.0518
[2025-12-02 23:40:17] 2025-12-02 22:39:13,462 | INFO     | sum of deviations: 2785251511072.116
[2025-12-02 23:40:17] 2025-12-02 22:39:13,462 | INFO     | mean x: 1764673083.08061
[2025-12-02 23:40:17] 2025-12-02 22:39:13,462 | INFO     | mean y: 2853282.2331154686
[2025-12-02 23:40:17] 2025-12-02 22:39:13,462 | INFO     | intersect: -6067988905.53558
[2025-12-02 23:40:17] 2025-12-02 22:39:13,464 | INFO     | chi2: 18.551438911675312
[2025-12-02 23:40:17] 2025-12-02 22:39:13,466 | INFO     | sum of square deviations: 800830289823.1935
[2025-12-02 23:40:17] 2025-12-02 22:39:13,520 | INFO     | sum of deviations: 3237873496222.5366
[2025-12-02 23:40:17] 2025-12-02 22:39:13,520 | INFO     | mean x: 1764672930.584548
[2025-12-02 23:40:17] 2025-12-02 22:39:13,520 | INFO     | mean y: 2861136.3746355684
[2025-12-02 23:40:17] 2025-12-02 22:39:13,521 | INFO     | intersect: -7131968532.346492
[2025-12-02 23:40:17] 2025-12-02 22:39:13,522 | INFO     | chi2: 15.41954929357701
[2025-12-02 23:40:17] 2025-12-02 22:39:13,523 | INFO     | current chi2=15.41954929357701 (change=16.88219244345113 %)
[2025-12-02 23:40:17] 2025-12-02 22:39:13,523 | INFO     | right removable region: 1371
[2025-12-02 23:40:17] 2025-12-02 22:39:13,525 | INFO     | sum of square deviations: 800829382143.1941
[2025-12-02 23:40:17] 2025-12-02 22:39:13,635 | INFO     | sum of deviations: 2199589516360.4155
[2025-12-02 23:40:17] 2025-12-02 22:39:13,636 | INFO     | mean x: 1764673235.584548
[2025-12-02 23:40:17] 2025-12-02 22:39:13,636 | INFO     | mean y: 2863445.302478134
[2025-12-02 23:40:17] 2025-12-02 22:39:13,636 | INFO     | intersect: -4844057553.532122
[2025-12-02 23:40:17] 2025-12-02 22:39:13,638 | INFO     | chi2: 13.796267902162338
[2025-12-02 23:40:17] 2025-12-02 22:39:13,638 | INFO     | current chi2=13.796267902162338 (change=25.63235677918394 %)
[2025-12-02 23:40:17] 2025-12-02 22:39:13,640 | INFO     | sum of square deviations: 792105360082.2902
[2025-12-02 23:40:17] 2025-12-02 22:39:13,711 | INFO     | sum of deviations: 1768718569501.6943
[2025-12-02 23:40:17] 2025-12-02 22:39:13,712 | INFO     | mean x: 1764673388.088515
[2025-12-02 23:40:17] 2025-12-02 22:39:13,712 | INFO     | mean y: 2870975.1016825163
[2025-12-02 23:40:17] 2025-12-02 22:39:13,712 | INFO     | intersect: -3937527295.0140133
[2025-12-02 23:40:17] 2025-12-02 22:39:13,713 | INFO     | chi2: 11.292837644137144
[2025-12-02 23:40:17] 2025-12-02 22:39:13,714 | INFO     | current chi2=11.292837644137144 (change=18.145706329991043 %)
[2025-12-02 23:40:17] 2025-12-02 22:39:13,714 | INFO     | left removable region: 20
[2025-12-02 23:40:17] 2025-12-02 22:39:13,716 | INFO     | sum of square deviations: 764616703639.4342
[2025-12-02 23:40:17] 2025-12-02 22:39:13,778 | INFO     | sum of deviations: 2124353072564.4978
[2025-12-02 23:40:17] 2025-12-02 22:39:13,778 | INFO     | mean x: 1764673510.092524
[2025-12-02 23:40:17] 2025-12-02 22:39:13,778 | INFO     | mean y: 2884214.3560325685
[2025-12-02 23:40:17] 2025-12-02 22:39:13,778 | INFO     | intersect: -4899950860.256758
[2025-12-02 23:40:17] 2025-12-02 22:39:13,780 | INFO     | chi2: 7.156500782044001
[2025-12-02 23:40:17] 2025-12-02 22:39:13,780 | INFO     | current memory leak: 2.78 B/s (using 1351 data points, chi2=7.16)
[2025-12-02 23:40:17] 2025-12-02 22:39:13,781 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-02 23:40:17] 2025-12-02 22:39:13,781 | INFO     | ..............................
[2025-12-02 23:40:17] 2025-12-02 22:39:13,781 | INFO     | . Timing measurements:
[2025-12-02 23:40:17] 2025-12-02 22:39:13,781 | INFO     | . get job = 0 s
[2025-12-02 23:40:17] 2025-12-02 22:39:13,781 | INFO     | . initial setup = 10 s
[2025-12-02 23:40:17] 2025-12-02 22:39:13,782 | INFO     | . payload setup = 177 s
[2025-12-02 23:40:17] 2025-12-02 22:39:13,782 | INFO     | . stage-in = 0 s
[2025-12-02 23:40:17] 2025-12-02 22:39:13,782 | INFO     | . payload execution = 84096 s
[2025-12-02 23:40:17] 2025-12-02 22:39:13,782 | INFO     | . stage-out = 5 s
[2025-12-02 23:40:17] 2025-12-02 22:39:13,782 | INFO     | . log creation = 2 s
[2025-12-02 23:40:17] 2025-12-02 22:39:13,782 | INFO     | ..............................
[2025-12-02 23:40:17] 2025-12-02 22:39:13,919 | INFO     | 
[2025-12-02 23:40:17] 2025-12-02 22:39:13,919 | INFO     | job summary report
[2025-12-02 23:40:17] 2025-12-02 22:39:13,919 | INFO     | --------------------------------------------------
[2025-12-02 23:40:17] 2025-12-02 22:39:13,919 | INFO     | PanDA job id: 6900800257
[2025-12-02 23:40:17] 2025-12-02 22:39:13,920 | INFO     | task id: 47556185
[2025-12-02 23:40:17] 2025-12-02 22:39:13,920 | INFO     | errors: (none)
[2025-12-02 23:40:17] 2025-12-02 22:39:13,920 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 23:40:17] 2025-12-02 22:39:13,920 | INFO     | pilot state: finished 
[2025-12-02 23:40:17] 2025-12-02 22:39:13,920 | INFO     | transexitcode: 0
[2025-12-02 23:40:17] 2025-12-02 22:39:13,920 | INFO     | exeerrorcode: 0
[2025-12-02 23:40:17] 2025-12-02 22:39:13,920 | INFO     | exeerrordiag: 
[2025-12-02 23:40:17] 2025-12-02 22:39:13,920 | INFO     | exitcode: 0
[2025-12-02 23:40:17] 2025-12-02 22:39:13,920 | INFO     | exitmsg: OK
[2025-12-02 23:40:17] 2025-12-02 22:39:13,920 | INFO     | cpuconsumptiontime: 319282 s
[2025-12-02 23:40:17] 2025-12-02 22:39:13,920 | INFO     | nevents: 1000
[2025-12-02 23:40:17] 2025-12-02 22:39:13,920 | INFO     | neventsw: 0
[2025-12-02 23:40:17] 2025-12-02 22:39:13,921 | INFO     | pid: 22567
[2025-12-02 23:40:17] 2025-12-02 22:39:13,921 | INFO     | pgrp: 22567
[2025-12-02 23:40:17] 2025-12-02 22:39:13,921 | INFO     | corecount: 8
[2025-12-02 23:40:17] 2025-12-02 22:39:13,921 | INFO     | event service: False
[2025-12-02 23:40:17] 2025-12-02 22:39:13,921 | INFO     | sizes: {0: 2284146, 1: 2284345, 12: 2284345, 23: 2284373, 33: 2284401, 44: 2284457, 55: 2284613, 65: 2284641, 76: 2284669, 87: 2284725, 98: 2284753, 103: 2285323, 
[2025-12-02 23:40:17] 2025-12-02 22:39:13,921 | INFO     | --------------------------------------------------
[2025-12-02 23:40:17] 2025-12-02 22:39:13,921 | INFO     | 
[2025-12-02 23:40:17] 2025-12-02 22:39:13,921 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2025-12-02 23:40:17] 2025-12-02 22:39:14,360 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,361 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,361 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,361 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,361 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,361 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,361 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,362 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,362 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,362 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,362 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,362 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,362 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,362 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,363 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,363 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 23:40:17] 2025-12-02 22:39:14,363 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,363 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 23:40:17] 2025-12-02 22:39:14,363 | INFO     | job 6900800257 has completed (purged errors)
[2025-12-02 23:40:17] 2025-12-02 22:39:14,363 | INFO     | overall cleanup function is called
[2025-12-02 23:40:17] 2025-12-02 22:39:15,386 | INFO     | --- collectZombieJob: --- 10, [22567]
[2025-12-02 23:40:17] 2025-12-02 22:39:15,386 | INFO     | zombie collector waiting for pid 22567
[2025-12-02 23:40:17] 2025-12-02 22:39:15,386 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 23:40:17] 2025-12-02 22:39:15,386 | INFO     | collected zombie processes
[2025-12-02 23:40:17] 2025-12-02 22:39:15,387 | INFO     | will attempt to kill all subprocesses of pid=22567
[2025-12-02 23:40:17] 2025-12-02 22:39:15,518 | INFO     | process IDs to be killed: [22567] (in reverse order)
[2025-12-02 23:40:17] 2025-12-02 22:39:15,838 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 23:40:17] 2025-12-02 22:39:15,838 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 23:40:17] 2025-12-02 22:39:15,841 | INFO     | did not find any defunct processes belonging to 22567
[2025-12-02 23:40:17] 2025-12-02 22:39:15,844 | INFO     | did not find any defunct processes belonging to 22567
[2025-12-02 23:40:17] 2025-12-02 22:39:15,885 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 23:40:17] 2025-12-02 22:39:15,886 | INFO     | ready for new job
[2025-12-02 23:40:17] 2025-12-02 22:39:15,886 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 23:40:17] 2025-12-02 22:39:15,891 | INFO     | ***************************************
[2025-12-02 23:40:17] 2025-12-02 22:39:15,892 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 23:40:17] 2025-12-02 22:39:15,892 | INFO     | ***************************************
[2025-12-02 23:40:17] 2025-12-02 22:39:15,892 | INFO     | 
[2025-12-02 23:40:17] 2025-12-02 22:39:15,892 | INFO     | pilot is running in a VM
[2025-12-02 23:40:17] 2025-12-02 22:39:15,893 | INFO     | architecture information:
[2025-12-02 23:40:17] 2025-12-02 22:39:15,900 | INFO     | executing command: cat /etc/os-release
[2025-12-02 23:40:17] 2025-12-02 22:39:16,098 | INFO     | cat /etc/os-release:
[2025-12-02 23:40:17] NAME="CentOS Linux"
[2025-12-02 23:40:17] VERSION="7 (Core)"
[2025-12-02 23:40:17] ID="centos"
[2025-12-02 23:40:17] ID_LIKE="rhel fedora"
[2025-12-02 23:40:17] VERSION_ID="7"
[2025-12-02 23:40:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 23:40:17] ANSI_COLOR="0;31"
[2025-12-02 23:40:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 23:40:17] HOME_URL="https://www.centos.org/"
[2025-12-02 23:40:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 23:40:17] 
[2025-12-02 23:40:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 23:40:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 23:40:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 23:40:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 23:40:17] 
[2025-12-02 23:40:17] 2025-12-02 22:39:16,099 | INFO     | ***************************************
[2025-12-02 23:40:17] 2025-12-02 22:39:16,602 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2025-12-02 23:40:17] 2025-12-02 22:39:16,902 | INFO     | sufficient remaining disk space (487993638912 B)
[2025-12-02 23:40:17] 2025-12-02 22:39:16,902 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 23:40:17] 2025-12-02 22:39:16,902 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 23:40:17] 2025-12-02 22:39:16,902 | INFO     | update_server=False
[2025-12-02 23:40:17] 2025-12-02 22:39:16,902 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 23:40:17] 2025-12-02 22:39:16,958 | INFO     | all data control threads have been joined
[2025-12-02 23:40:17] 2025-12-02 22:39:17,165 | INFO     | all payload control threads have been joined
[2025-12-02 23:40:17] 2025-12-02 22:39:17,627 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:40:17] 2025-12-02 22:39:17,627 | INFO     | aborting loop
[2025-12-02 23:40:17] 2025-12-02 22:39:17,643 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 23:40:17] 2025-12-02 22:39:17,907 | INFO     | [job] retrieve thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:17,964 | INFO     | [data] control thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:17,997 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:18,009 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:18,054 | INFO     | [payload] failed_post thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:18,104 | INFO     | all job control threads have been joined
[2025-12-02 23:40:17] 2025-12-02 22:39:18,171 | INFO     | [payload] control thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:18,425 | INFO     | [data] copytool_in thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:18,473 | INFO     | [payload] validate_post thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:18,633 | INFO     | [job] job monitor thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:18,774 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 23:40:17] 2025-12-02 22:39:18,933 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:40:17] 2025-12-02 22:39:19,090 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:19,095 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:19,110 | INFO     | [job] control thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:19,321 | INFO     | [job] validate thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:19,650 | INFO     | [data] copytool_out thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:19,939 | INFO     | [job] queue monitor thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:22,784 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 23:40:17] 2025-12-02 22:39:46,138 | INFO     | PID=15948 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 23:40:17] 2025-12-02 22:39:46,138 | INFO     | .. there are 9 such processes running
[2025-12-02 23:40:17] 2025-12-02 22:39:46,138 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 23:40:17] 2025-12-02 22:39:46,138 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 23:40:17] 2025-12-02 22:39:46,138 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 23:40:17] 2025-12-02 22:40:06,156 | INFO     | [monitor] cgroup control has ended
[2025-12-02 23:40:17] 2025-12-02 22:40:07,103 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140541071451968)>', '<ExcThread(monitor, started 140540632876800)>']
[2025-12-02 23:40:17] 2025-12-02 22:40:07,262 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 23:40:17] 2025-12-02 22:40:07,262 | INFO     | [monitor] control thread has ended
[2025-12-02 23:40:17] 2025-12-02 22:40:12,129 | INFO     | all workflow threads have been joined
[2025-12-02 23:40:17] 2025-12-02 22:40:12,129 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 23:40:17] 2025-12-02 22:40:12,130 | INFO     | traces error code: 0
[2025-12-02 23:40:17] 2025-12-02 22:40:12,130 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 23:40:17] 2025-12-02 22:40:12,531 [wrapper] ==== pilot stdout END ====
[2025-12-02 23:40:17] 2025-12-02 22:40:12,623 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 23:40:17] 2025-12-02 22:40:12,715 [wrapper] pilotpid: 15948
[2025-12-02 23:40:17] 2025-12-02 22:40:12,826 [wrapper] Pilot exit status: 0
[2025-12-02 23:40:17] 2025-12-02 22:40:13,220 [wrapper] pandaids: 6900800257
[2025-12-02 23:40:17] 2025-12-02 22:40:14,131 [wrapper] cleanup supervisor_pilot 25865 15949
[2025-12-02 23:40:17] 2025-12-02 22:40:14,179 [wrapper] Test setup, not cleaning
[2025-12-02 23:40:17] 2025-12-02 22:40:14,259 [wrapper] apfmon messages muted
[2025-12-02 23:40:17] 2025-12-02 22:40:14,312 [wrapper] ==== wrapper stdout END ====
[2025-12-02 23:40:17] 2025-12-02 22:40:14,406 [wrapper] ==== wrapper stderr END ====
[2025-12-02 23:40:17]  *** Error codes and diagnostics ***
[2025-12-02 23:40:17]     "exeErrorCode": 0,
[2025-12-02 23:40:17]     "exeErrorDiag": "",
[2025-12-02 23:40:17]     "pilotErrorCode": 0,
[2025-12-02 23:40:17]     "pilotErrorDiag": "",
[2025-12-02 23:40:17]  *** Listing of results directory ***
[2025-12-02 23:40:17] total 1327760
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-02 23:40:17] -rwx------. 1 boinc boinc     36292 Nov 28 02:00 runpilot2-wrapper.sh
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc      5112 Nov 28 02:01 queuedata.json
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc       100 Dec  2 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 23:40:17] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 00:05 run_atlas
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc       105 Dec  2 00:05 job.xml
[2025-12-02 23:40:17] -rw-r--r--. 2 boinc boinc 408176468 Dec  2 00:05 EVNT.47483658._004451.pool.root.1
[2025-12-02 23:40:17] -rw-r--r--. 2 boinc boinc     15847 Dec  2 00:05 start_atlas.sh
[2025-12-02 23:40:17] drwxrwx--x. 2 boinc boinc        68 Dec  2 00:05 shared
[2025-12-02 23:40:17] -rw-r--r--. 2 boinc boinc    590109 Dec  2 00:05 input.tar.gz
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc      6391 Dec  2 00:05 init_data.xml
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc         0 Dec  2 00:05 boinc_lockfile
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc      2787 Dec  2 00:05 pandaJob.out
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc    992004 Dec  2 00:09 agis_schedconf.cvmfs.json
[2025-12-02 23:40:17] drwx------. 5 boinc boinc      4096 Dec  2 00:09 pilot3
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc       533 Dec  2 23:17 boinc_task_state.xml
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc 920124096 Dec  2 23:36 HITS.47556185._002149.pool.root.1
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc      1029 Dec  2 23:37 memory_monitor_summary.json
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc   1516240 Dec  2 23:37 agis_ddmendpoints.agis.ALL.json
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc   2461502 Dec  2 23:37 log.47556185._002149.job.log.tgz.1
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc        95 Dec  2 23:38 pilot_heartbeat.json
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc      8628 Dec  2 23:39 heartbeat.json
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc        29 Dec  2 23:39 wrapper_checkpoint.txt
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc      8192 Dec  2 23:39 boinc_mmap_file
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc      4885 Dec  2 23:40 pilotlog.txt
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc  11247450 Dec  2 23:40 log.47556185._002149.job.log.1
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc       353 Dec  2 23:40 output.list
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc       620 Dec  2 23:40 runtime_log
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc  13731840 Dec  2 23:40 result.tar.gz
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc      8833 Dec  2 23:40 runtime_log.err
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc       662 Dec  2 23:40 HgHKDmf11i8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNDOKDmxjzIdn.diag
[2025-12-02 23:40:17] -rw-r--r--. 1 boinc boinc     21230 Dec  2 23:40 stderr.txt
[2025-12-02 23:40:17] HITS file was successfully produced:
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc 920124096 Dec  2 23:36 shared/HITS.pool.root.1
[2025-12-02 23:40:17]  *** Contents of shared directory: ***
[2025-12-02 23:40:17] total 1311180
[2025-12-02 23:40:17] -rw-r--r--. 2 boinc boinc 408176468 Dec  2 00:05 ATLAS.root_0
[2025-12-02 23:40:17] -rw-r--r--. 2 boinc boinc     15847 Dec  2 00:05 start_atlas.sh
[2025-12-02 23:40:17] -rw-r--r--. 2 boinc boinc    590109 Dec  2 00:05 input.tar.gz
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc 920124096 Dec  2 23:36 HITS.pool.root.1
[2025-12-02 23:40:17] -rw-------. 1 boinc boinc  13731840 Dec  2 23:40 result.tar.gz
23:40:18 (12133): run_atlas exited; CPU time 319882.393250
23:40:18 (12133): called boinc_finish(0)

</stderr_txt>
]]>

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