Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:46:56 (7492): wrapper (7.7.26015): starting
20:46:56 (7492): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 20:46:56] Arguments: --nthreads 8
[2025-12-01 20:46:56] Threads: 8
[2025-12-01 20:46:56] Checking for CVMFS
[2025-12-01 20:46:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 20:46:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 20:46:58] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 20:46:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 20:46:59] 2.11.2.0 942 179814 128044 153530 1 85 19949064 25165825 2504 130560 12 62901914 99.903 32818536 2243 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 20:46:59] CVMFS is ok
[2025-12-01 20:46:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 20:46:59] Checking for apptainer binary...
[2025-12-01 20:46:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 20:46:59] Running /usr/bin/apptainer --version
[2025-12-01 20:46:59] apptainer version 1.3.2-1.el7
[2025-12-01 20:46:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 20:47:32] cg-vwn460.simple-grid.lan
[2025-12-01 20:47:32] apptainer works
[2025-12-01 20:47:32] Set ATHENA_PROC_NUMBER=8
[2025-12-01 20:47:32] Set ATHENA_CORE_NUMBER=8
[2025-12-01 20:47:32] Starting ATLAS job with PandaID=6897957734
[2025-12-01 20:47:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 15:52:27]  *** The last 200 lines of the pilot log: ***
[2025-12-02 15:52:27] 2025-12-02 14:51:11,504 | INFO     | monitor loop #4701: job 0:6897957734 is in state 'finished'
[2025-12-02 15:52:27] 2025-12-02 14:51:11,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:52:27] 2025-12-02 14:51:12,694 | INFO     | time since job start (68390s) is within the limit (172800.0s)
[2025-12-02 15:52:27] 2025-12-02 14:51:14,014 | INFO     | monitor loop #4702: job 0:6897957734 is in state 'finished'
[2025-12-02 15:52:27] 2025-12-02 14:51:14,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:52:27] 2025-12-02 14:51:14,700 | INFO     | time since job start (68392s) is within the limit (172800.0s)
[2025-12-02 15:52:27] 2025-12-02 14:51:15,910 | INFO     | PID=11264 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 15:52:27] 2025-12-02 14:51:15,910 | INFO     | .. there are 9 such processes running
[2025-12-02 15:52:27] 2025-12-02 14:51:16,526 | INFO     | monitor loop #4703: job 0:6897957734 is in state 'finished'
[2025-12-02 15:52:27] 2025-12-02 14:51:16,526 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:52:27] 2025-12-02 14:51:16,914 | INFO     | time since job start (68394s) is within the limit (172800.0s)
[2025-12-02 15:52:27] 2025-12-02 14:51:18,920 | INFO     | time since job start (68396s) is within the limit (172800.0s)
[2025-12-02 15:52:27] 2025-12-02 14:51:18,923 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 15:52:27] 2025-12-02 14:51:18,925 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-12-02 15:52:27] 2025-12-02 14:51:18,928 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6897957734/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 15:52:27] 2025-12-02 14:51:18,928 | INFO     | extracted standard info from prmon json
[2025-12-02 15:52:27] 2025-12-02 14:51:18,929 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 15:52:27] 2025-12-02 14:51:18,929 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 15:52:27] 2025-12-02 14:51:18,948 | INFO     | fitting pss+swap vs Time
[2025-12-02 15:52:27] 2025-12-02 14:51:18,949 | INFO     | sum of square deviations: 424079647966.8912
[2025-12-02 15:52:27] 2025-12-02 14:51:18,985 | INFO     | sum of deviations: 3723737692968.625
[2025-12-02 15:52:27] 2025-12-02 14:51:18,985 | INFO     | mean x: 1764653165.4765766
[2025-12-02 15:52:27] 2025-12-02 14:51:18,985 | INFO     | mean y: 3312391.8702702704
[2025-12-02 15:52:27] 2025-12-02 14:51:18,986 | INFO     | intersect: -15491667239.443113
[2025-12-02 15:52:27] 2025-12-02 14:51:18,987 | INFO     | chi2: 29.569263002011425
[2025-12-02 15:52:27] 2025-12-02 14:51:18,988 | INFO     | sum of square deviations: 418374950684.60095
[2025-12-02 15:52:27] 2025-12-02 14:51:19,031 | INFO     | sum of deviations: 4189329809060.0977
[2025-12-02 15:52:27] 2025-12-02 14:51:19,032 | INFO     | mean x: 1764653012.9809954
[2025-12-02 15:52:27] 2025-12-02 14:51:19,032 | INFO     | mean y: 3324837.004524887
[2025-12-02 15:52:27] 2025-12-02 14:51:19,032 | INFO     | intersect: -17666742306.910416
[2025-12-02 15:52:27] 2025-12-02 14:51:19,033 | INFO     | chi2: 26.02054449944094
[2025-12-02 15:52:27] 2025-12-02 14:51:19,033 | INFO     | current chi2=26.02054449944094 (change=12.001376234264226 %)
[2025-12-02 15:52:27] 2025-12-02 14:51:19,034 | INFO     | right removable region: 1104
[2025-12-02 15:52:27] 2025-12-02 14:51:19,035 | INFO     | sum of square deviations: 418374289444.601
[2025-12-02 15:52:27] 2025-12-02 14:51:19,055 | INFO     | monitor loop #4704: job 0:6897957734 is in state 'finished'
[2025-12-02 15:52:27] 2025-12-02 14:51:19,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:52:27] 2025-12-02 14:51:19,087 | INFO     | sum of deviations: 3163472704164.933
[2025-12-02 15:52:27] 2025-12-02 14:51:19,099 | INFO     | mean x: 1764653317.9809954
[2025-12-02 15:52:27] 2025-12-02 14:51:19,099 | INFO     | mean y: 3327367.8542986424
[2025-12-02 15:52:27] 2025-12-02 14:51:19,099 | INFO     | intersect: -13339826703.964348
[2025-12-02 15:52:27] 2025-12-02 14:51:19,101 | INFO     | chi2: 24.160418594291862
[2025-12-02 15:52:27] 2025-12-02 14:51:19,101 | INFO     | current chi2=24.160418594291862 (change=18.29211775535843 %)
[2025-12-02 15:52:27] 2025-12-02 14:51:19,101 | INFO     | left removable region: 10
[2025-12-02 15:52:27] 2025-12-02 14:51:19,102 | INFO     | sum of square deviations: 406003881755.40814
[2025-12-02 15:52:27] 2025-12-02 14:51:19,134 | INFO     | sum of deviations: 3189736458840.4756
[2025-12-02 15:52:27] 2025-12-02 14:51:19,135 | INFO     | mean x: 1764653287.4908593
[2025-12-02 15:52:27] 2025-12-02 14:51:19,135 | INFO     | mean y: 3357417.3976234
[2025-12-02 15:52:27] 2025-12-02 14:51:19,135 | INFO     | intersect: -13860497538.829823
[2025-12-02 15:52:27] 2025-12-02 14:51:19,136 | INFO     | chi2: 14.786807278600095
[2025-12-02 15:52:27] 2025-12-02 14:51:19,137 | INFO     | current memory leak: 7.86 B/s (using 1094 data points, chi2=14.79)
[2025-12-02 15:52:27] 2025-12-02 14:51:19,138 | INFO     | could have reported an average CPU frequency of 2250 MHz (39 samples)
[2025-12-02 15:52:27] 2025-12-02 14:51:19,138 | INFO     | ..............................
[2025-12-02 15:52:27] 2025-12-02 14:51:19,138 | INFO     | . Timing measurements:
[2025-12-02 15:52:27] 2025-12-02 14:51:19,138 | INFO     | . get job = 0 s
[2025-12-02 15:52:27] 2025-12-02 14:51:19,138 | INFO     | . initial setup = 8 s
[2025-12-02 15:52:27] 2025-12-02 14:51:19,138 | INFO     | . payload setup = 317 s
[2025-12-02 15:52:27] 2025-12-02 14:51:19,139 | INFO     | . stage-in = 0 s
[2025-12-02 15:52:27] 2025-12-02 14:51:19,139 | INFO     | . payload execution = 67831 s
[2025-12-02 15:52:27] 2025-12-02 14:51:19,139 | INFO     | . stage-out = 3 s
[2025-12-02 15:52:27] 2025-12-02 14:51:19,139 | INFO     | . log creation = 0 s
[2025-12-02 15:52:27] 2025-12-02 14:51:19,139 | INFO     | ..............................
[2025-12-02 15:52:27] 2025-12-02 14:51:19,248 | INFO     | 
[2025-12-02 15:52:27] 2025-12-02 14:51:19,248 | INFO     | job summary report
[2025-12-02 15:52:27] 2025-12-02 14:51:19,248 | INFO     | --------------------------------------------------
[2025-12-02 15:52:27] 2025-12-02 14:51:19,248 | INFO     | PanDA job id: 6897957734
[2025-12-02 15:52:27] 2025-12-02 14:51:19,248 | INFO     | task id: 47538121
[2025-12-02 15:52:27] 2025-12-02 14:51:19,248 | INFO     | errors: (none)
[2025-12-02 15:52:27] 2025-12-02 14:51:19,248 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 15:52:27] 2025-12-02 14:51:19,248 | INFO     | pilot state: finished 
[2025-12-02 15:52:27] 2025-12-02 14:51:19,248 | INFO     | transexitcode: 0
[2025-12-02 15:52:27] 2025-12-02 14:51:19,248 | INFO     | exeerrorcode: 0
[2025-12-02 15:52:27] 2025-12-02 14:51:19,248 | INFO     | exeerrordiag: 
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | exitcode: 0
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | exitmsg: OK
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | cpuconsumptiontime: 251919 s
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | nevents: 1000
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | neventsw: 0
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | pid: 18600
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | pgrp: 18600
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | corecount: 8
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | event service: False
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | sizes: {0: 2283623, 1: 2284308, 2: 2284507, 3: 2284507, 13: 2284535, 24: 2284591, 35: 2284747, 45: 2284775, 56: 2284803, 67: 2284831, 78: 2284859, 85: 2285457, 88:
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | --------------------------------------------------
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | 
[2025-12-02 15:52:27] 2025-12-02 14:51:19,249 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-02 15:52:27] 2025-12-02 14:51:19,721 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,721 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,721 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,721 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,722 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,722 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,722 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,722 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,722 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,722 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,722 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,722 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,722 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,722 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,722 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,723 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 15:52:27] 2025-12-02 14:51:19,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,723 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 15:52:27] 2025-12-02 14:51:19,723 | INFO     | job 6897957734 has completed (purged errors)
[2025-12-02 15:52:27] 2025-12-02 14:51:19,723 | INFO     | overall cleanup function is called
[2025-12-02 15:52:27] 2025-12-02 14:51:20,738 | INFO     | --- collectZombieJob: --- 10, [18600]
[2025-12-02 15:52:27] 2025-12-02 14:51:20,739 | INFO     | zombie collector waiting for pid 18600
[2025-12-02 15:52:27] 2025-12-02 14:51:20,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 15:52:27] 2025-12-02 14:51:20,739 | INFO     | collected zombie processes
[2025-12-02 15:52:27] 2025-12-02 14:51:20,739 | INFO     | will attempt to kill all subprocesses of pid=18600
[2025-12-02 15:52:27] 2025-12-02 14:51:20,851 | INFO     | process IDs to be killed: [18600] (in reverse order)
[2025-12-02 15:52:27] 2025-12-02 14:51:21,643 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 15:52:27] 2025-12-02 14:51:21,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 15:52:27] 2025-12-02 14:51:21,646 | INFO     | did not find any defunct processes belonging to 18600
[2025-12-02 15:52:27] 2025-12-02 14:51:21,649 | INFO     | did not find any defunct processes belonging to 18600
[2025-12-02 15:52:27] 2025-12-02 14:51:21,692 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 15:52:27] 2025-12-02 14:51:21,692 | INFO     | ready for new job
[2025-12-02 15:52:27] 2025-12-02 14:51:21,692 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 15:52:27] 2025-12-02 14:51:21,696 | INFO     | ***************************************
[2025-12-02 15:52:27] 2025-12-02 14:51:21,696 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 15:52:27] 2025-12-02 14:51:21,696 | INFO     | ***************************************
[2025-12-02 15:52:27] 2025-12-02 14:51:21,696 | INFO     | 
[2025-12-02 15:52:27] 2025-12-02 14:51:21,697 | INFO     | pilot is running in a VM
[2025-12-02 15:52:27] 2025-12-02 14:51:21,697 | INFO     | architecture information:
[2025-12-02 15:52:27] 2025-12-02 14:51:21,708 | INFO     | executing command: cat /etc/os-release
[2025-12-02 15:52:27] 2025-12-02 14:51:21,893 | INFO     | cat /etc/os-release:
[2025-12-02 15:52:27] NAME="CentOS Linux"
[2025-12-02 15:52:27] VERSION="7 (Core)"
[2025-12-02 15:52:27] ID="centos"
[2025-12-02 15:52:27] ID_LIKE="rhel fedora"
[2025-12-02 15:52:27] VERSION_ID="7"
[2025-12-02 15:52:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 15:52:27] ANSI_COLOR="0;31"
[2025-12-02 15:52:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 15:52:27] HOME_URL="https://www.centos.org/"
[2025-12-02 15:52:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 15:52:27] 
[2025-12-02 15:52:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 15:52:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 15:52:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 15:52:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 15:52:27] 
[2025-12-02 15:52:27] 2025-12-02 14:51:21,894 | INFO     | ***************************************
[2025-12-02 15:52:27] 2025-12-02 14:51:22,397 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-02 15:52:27] 2025-12-02 14:51:22,457 | INFO     | sufficient remaining disk space (489206841344 B)
[2025-12-02 15:52:27] 2025-12-02 14:51:22,457 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 15:52:27] 2025-12-02 14:51:22,458 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 15:52:27] 2025-12-02 14:51:22,458 | INFO     | update_server=False
[2025-12-02 15:52:27] 2025-12-02 14:51:22,458 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 15:52:27] 2025-12-02 14:51:22,517 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 15:52:27] 2025-12-02 14:51:22,523 | INFO     | all payload control threads have been joined
[2025-12-02 15:52:27] 2025-12-02 14:51:22,607 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:52:27] 2025-12-02 14:51:22,607 | INFO     | aborting loop
[2025-12-02 15:52:27] 2025-12-02 14:51:23,293 | INFO     | all data control threads have been joined
[2025-12-02 15:52:27] 2025-12-02 14:51:23,464 | INFO     | [job] retrieve thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:23,529 | INFO     | [payload] control thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:23,580 | INFO     | [data] copytool_in thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:23,613 | INFO     | [job] job monitor thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:23,794 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:23,910 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 15:52:27] 2025-12-02 14:51:24,039 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:24,128 | INFO     | all job control threads have been joined
[2025-12-02 15:52:27] 2025-12-02 14:51:24,264 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:52:27] 2025-12-02 14:51:24,299 | INFO     | [data] control thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:24,448 | INFO     | [payload] validate_post thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:24,513 | INFO     | [payload] failed_post thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:24,642 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:24,736 | INFO     | [job] validate thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:25,134 | INFO     | [job] control thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:25,270 | INFO     | [job] queue monitor thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:25,917 | INFO     | [data] copytool_out thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:26,526 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:32,549 | INFO     | job.realtimelogging is not enabled
[2025-12-02 15:52:27] 2025-12-02 14:51:33,555 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 15:52:27] 2025-12-02 14:51:52,094 | INFO     | PID=11264 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 15:52:27] 2025-12-02 14:51:52,094 | INFO     | .. there are 9 such processes running
[2025-12-02 15:52:27] 2025-12-02 14:51:52,095 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 15:52:27] 2025-12-02 14:51:52,095 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 15:52:27] 2025-12-02 14:51:52,095 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 15:52:27] 2025-12-02 14:51:56,424 [wrapper] supervise_pilot (15 min periods counter: 77)
[2025-12-02 15:52:27] 2025-12-02 14:52:20,989 | INFO     | [monitor] cgroup control has ended
[2025-12-02 15:52:27] 2025-12-02 14:52:21,747 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140633372448576)>', '<ExcThread(monitor, started 140632773347072)>']
[2025-12-02 15:52:27] 2025-12-02 14:52:22,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 15:52:27] 2025-12-02 14:52:22,258 | INFO     | [monitor] control thread has ended
[2025-12-02 15:52:27] 2025-12-02 14:52:26,772 | INFO     | all workflow threads have been joined
[2025-12-02 15:52:27] 2025-12-02 14:52:26,772 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 15:52:27] 2025-12-02 14:52:26,773 | INFO     | traces error code: 0
[2025-12-02 15:52:27] 2025-12-02 14:52:26,773 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 15:52:27] 2025-12-02 14:52:26,940 [wrapper] ==== pilot stdout END ====
[2025-12-02 15:52:27] 2025-12-02 14:52:26,955 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 15:52:27] 2025-12-02 14:52:26,964 [wrapper] pilotpid: 11264
[2025-12-02 15:52:27] 2025-12-02 14:52:26,970 [wrapper] Pilot exit status: 0
[2025-12-02 15:52:27] 2025-12-02 14:52:26,987 [wrapper] pandaids: 6897957734
[2025-12-02 15:52:27] 2025-12-02 14:52:27,027 [wrapper] cleanup supervisor_pilot 28528 11265
[2025-12-02 15:52:27] 2025-12-02 14:52:27,031 [wrapper] Test setup, not cleaning
[2025-12-02 15:52:27] 2025-12-02 14:52:27,046 [wrapper] apfmon messages muted
[2025-12-02 15:52:27] 2025-12-02 14:52:27,053 [wrapper] ==== wrapper stdout END ====
[2025-12-02 15:52:27] 2025-12-02 14:52:27,063 [wrapper] ==== wrapper stderr END ====
[2025-12-02 15:52:27]  *** Error codes and diagnostics ***
[2025-12-02 15:52:27]     "exeErrorCode": 0,
[2025-12-02 15:52:27]     "exeErrorDiag": "",
[2025-12-02 15:52:27]     "pilotErrorCode": 0,
[2025-12-02 15:52:27]     "pilotErrorDiag": "",
[2025-12-02 15:52:27]  *** Listing of results directory ***
[2025-12-02 15:52:27] total 1093116
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc      5112 Nov 28 23:43 queuedata.json
[2025-12-02 15:52:27] -rwx------. 1 boinc boinc     36292 Nov 28 23:44 runpilot2-wrapper.sh
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc       100 Dec  1 20:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 15:52:27] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 20:46 run_atlas
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc       105 Dec  1 20:46 job.xml
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc      6392 Dec  1 20:46 init_data.xml
[2025-12-02 15:52:27] -rw-r--r--. 2 boinc boinc 380229600 Dec  1 20:46 EVNT.47528880._000070.pool.root.1
[2025-12-02 15:52:27] -rw-r--r--. 2 boinc boinc     15847 Dec  1 20:46 start_atlas.sh
[2025-12-02 15:52:27] drwxrwx--x. 2 boinc boinc        68 Dec  1 20:46 shared
[2025-12-02 15:52:27] -rw-r--r--. 2 boinc boinc    590125 Dec  1 20:46 input.tar.gz
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc         0 Dec  1 20:46 boinc_lockfile
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc      2880 Dec  1 20:47 pandaJob.out
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc    992004 Dec  1 20:51 agis_schedconf.cvmfs.json
[2025-12-02 15:52:27] drwx------. 5 boinc boinc      4096 Dec  1 20:51 pilot3
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc       533 Dec  2 15:35 boinc_task_state.xml
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc 712096439 Dec  2 15:49 HITS.47538121._000692.pool.root.1
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc      1032 Dec  2 15:50 memory_monitor_summary.json
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc   1516240 Dec  2 15:50 agis_ddmendpoints.agis.ALL.json
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc   2351647 Dec  2 15:50 log.47538121._000692.job.log.tgz.1
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc     28257 Dec  2 15:51 heartbeat.json
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc        95 Dec  2 15:51 pilot_heartbeat.json
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc      8192 Dec  2 15:52 boinc_mmap_file
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc        29 Dec  2 15:52 wrapper_checkpoint.txt
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc      4956 Dec  2 15:52 pilotlog.txt
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc   9191018 Dec  2 15:52 log.47538121._000692.job.log.1
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc       353 Dec  2 15:52 output.list
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc       620 Dec  2 15:52 runtime_log
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc  11581440 Dec  2 15:52 result.tar.gz
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc      8817 Dec  2 15:52 runtime_log.err
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc       661 Dec  2 15:52 BkXNDmHNMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpXLKDmscKkEo.diag
[2025-12-02 15:52:27] -rw-r--r--. 1 boinc boinc     21454 Dec  2 15:52 stderr.txt
[2025-12-02 15:52:27] HITS file was successfully produced:
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc 712096439 Dec  2 15:49 shared/HITS.pool.root.1
[2025-12-02 15:52:27]  *** Contents of shared directory: ***
[2025-12-02 15:52:27] total 1078636
[2025-12-02 15:52:27] -rw-r--r--. 2 boinc boinc 380229600 Dec  1 20:46 ATLAS.root_0
[2025-12-02 15:52:27] -rw-r--r--. 2 boinc boinc     15847 Dec  1 20:46 start_atlas.sh
[2025-12-02 15:52:27] -rw-r--r--. 2 boinc boinc    590125 Dec  1 20:46 input.tar.gz
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc 712096439 Dec  2 15:49 HITS.pool.root.1
[2025-12-02 15:52:27] -rw-------. 1 boinc boinc  11581440 Dec  2 15:52 result.tar.gz
15:52:28 (7492): run_atlas exited; CPU time 252236.404946
15:52:28 (7492): called boinc_finish(0)

</stderr_txt>
]]>

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