Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:30:39 (206852): wrapper (7.7.26015): starting
16:30:39 (206852): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 16:30:40] Arguments: --nthreads 12
[2025-11-29 16:30:40] Threads: 12
[2025-11-29 16:30:40] Checking for CVMFS
[2025-11-29 16:30:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 16:30:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 16:30:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 16:30:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 16:30:42] 2.11.5.0 538441 33100 341476 153462 2 83 44134499 45568001 16140 130560 0 271729019 99.803 158920522 26232 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-29 16:30:42] CVMFS is ok
[2025-11-29 16:30:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 16:30:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 16:30:42] Further information can be found at the LHC@home message board.
[2025-11-29 16:30:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 16:30:42] Checking for apptainer binary...
[2025-11-29 16:30:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 16:30:42] Running /usr/bin/apptainer --version
[2025-11-29 16:30:43] apptainer version 1.4.1-1.el9
[2025-11-29 16:30:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 16:30:43] wns0030.triumf.lcg
[2025-11-29 16:30:43] apptainer works
[2025-11-29 16:30:44] Set ATHENA_PROC_NUMBER=12
[2025-11-29 16:30:44] Set ATHENA_CORE_NUMBER=12
[2025-11-29 16:30:44] Starting ATLAS job with PandaID=6897957722
[2025-11-29 16:30:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 16:38:53]  *** The last 200 lines of the pilot log: ***
[2025-11-29 16:38:53] 2025-11-30 00:38:19,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 16:38:53] 2025-11-30 00:38:19,991 | WARNING  | wrong length of table data, x=[1764462821.0, 1764462882.0, 1764462943.0], y=[1929.0, 576938.0, 812262.0] (must be same and length>=4)
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | could have reported an average CPU frequency of 2093 MHz (4 samples)
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | ..............................
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . Timing measurements:
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . get job = 0 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . initial setup = 4 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . payload setup = 40 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . stage-in = 0 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . payload execution = 153 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . stage-out = 1 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . log creation = 0 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | ..............................
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 16:38:53] 2025-11-30 00:38:19,993 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897957722/pilotlog.txt
[2025-11-29 16:38:53] 2025-11-30 00:38:20,032 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-29 16:38:53] - Log from pilotlog.txt -
[2025-11-29 16:38:53] 2025-11-30 00:38:19,969 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897957722/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 16:38:53] 2025-11-30 00:38:19,990 | INFO     | extracted standard info from prmon json
[2025-11-29 16:38:53] 2025-11-30 00:38:19,990 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 16:38:53] 2025-11-30 00:38:19,990 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 16:38:53] 2025-11-30 00:38:19,991 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 16:38:53] 2025-11-30 00:38:19,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 16:38:53] 2025-11-30 00:38:19,991 | WARNING  | wrong length of table data, x=[1764462821.0, 1764462882.0, 1764462943.0], y=[1929.0, 576938.0, 812262.0] (must be same and length>=4)
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | could have reported an average CPU frequency of 2093 MHz (4 samples)
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | ..............................
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . Timing measurements:
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . get job = 0 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . initial setup = 4 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . payload setup = 40 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . stage-in = 0 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . payload execution = 153 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . stage-out = 1 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . log creation = 0 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | ..............................
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 16:38:53] 2025-11-30 00:38:19,993 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897957722/pilotlog.txt
[2025-11-29 16:38:53] 2025-11-30 00:38:20,032 | WARNING  | 
[2025-11-29 16:38:53] [begin log extracts]
[2025-11-29 16:38:53] - Log from pilotlog.txt -
[2025-11-29 16:38:53] 2025-11-30 00:38:19,969 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897957722/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 16:38:53] 2025-11-30 00:38:19,990 | INFO     | extracted standard info from prmon json
[2025-11-29 16:38:53] 2025-11-30 00:38:19,990 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 16:38:53] 2025-11-30 00:38:19,990 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 16:38:53] 2025-11-30 00:38:19,991 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 16:38:53] 2025-11-30 00:38:19,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 16:38:53] 2025-11-30 00:38:19,991 | WARNING  | wrong length of table data, x=[1764462821.0, 1764462882.0, 1764462943.0], y=[1929.0, 576938.0, 812262.0] (must be same and length>=4)
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | could have reported an average CPU frequency of 2093 MHz (4 samples)
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | ..............................
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . Timing measurements:
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . get job = 0 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . initial setup = 4 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . payload setup = 40 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . stage-in = 0 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . payload execution = 153 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . stage-out = 1 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | . log creation = 0 s
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | ..............................
[2025-11-29 16:38:53] 2025-11-30 00:38:19,992 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 16:38:53] 2025-11-30 00:38:19,993 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897957722/pilotlog.txt
[2025-11-29 16:38:53] [end log extracts]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,032 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-29 16:38:53] 2025-11-30 00:38:20,033 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-29 16:38:53] 2025-11-30 00:38:20,101 | INFO     | 
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | job summary report
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | --------------------------------------------------
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | PanDA job id: 6897957722
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | task id: 47538121
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-29 16:35:45,858 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | pilot state: failed 
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | transexitcode: 65
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | exeerrorcode: 65
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | exitcode: 65
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | cpuconsumptiontime: 73 s
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | nevents: 0
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | neventsw: 0
[2025-11-29 16:38:53] 2025-11-30 00:38:20,102 | INFO     | pid: 218304
[2025-11-29 16:38:53] 2025-11-30 00:38:20,103 | INFO     | pgrp: 218304
[2025-11-29 16:38:53] 2025-11-30 00:38:20,103 | INFO     | corecount: 12
[2025-11-29 16:38:53] 2025-11-30 00:38:20,103 | INFO     | event service: False
[2025-11-29 16:38:53] 2025-11-30 00:38:20,103 | INFO     | sizes: {0: 2284276, 1: 2284304, 2: 2284503, 13: 2284503, 25: 2284559, 33: 2284849, 35: 2285033, 194: 2308692, 195: 2308668, 198: 2313014, 342: 2313152}
[2025-11-29 16:38:53] 2025-11-30 00:38:20,103 | INFO     | --------------------------------------------------
[2025-11-29 16:38:53] 2025-11-30 00:38:20,103 | INFO     | 
[2025-11-29 16:38:53] 2025-11-30 00:38:20,103 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-29 16:38:53] 2025-11-30 00:38:20,197 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,197 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,197 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,197 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,197 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,197 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 16:38:53] 2025-11-30 00:38:20,198 | INFO     | job 6897957722 has completed (purged errors)
[2025-11-29 16:38:53] 2025-11-30 00:38:20,199 | INFO     | overall cleanup function is called
[2025-11-29 16:38:53] 2025-11-30 00:38:21,230 | INFO     | --- collectZombieJob: --- 10, [218304]
[2025-11-29 16:38:53] 2025-11-30 00:38:21,230 | INFO     | zombie collector waiting for pid 218304
[2025-11-29 16:38:53] 2025-11-30 00:38:21,230 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 16:38:53] 2025-11-30 00:38:21,230 | INFO     | collected zombie processes
[2025-11-29 16:38:53] 2025-11-30 00:38:21,230 | INFO     | will attempt to kill all subprocesses of pid=218304
[2025-11-29 16:38:53] 2025-11-30 00:38:21,613 | INFO     | process IDs to be killed: [218304] (in reverse order)
[2025-11-29 16:38:53] 2025-11-30 00:38:21,705 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 16:38:53] 2025-11-30 00:38:21,705 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 16:38:53] 2025-11-30 00:38:21,725 | INFO     | did not find any defunct processes belonging to 218304
[2025-11-29 16:38:53] 2025-11-30 00:38:21,758 | INFO     | did not find any defunct processes belonging to 218304
[2025-11-29 16:38:53] 2025-11-30 00:38:21,759 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 16:38:53] 2025-11-30 00:38:21,759 | INFO     | ready for new job
[2025-11-29 16:38:53] 2025-11-30 00:38:21,759 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 16:38:53] 2025-11-30 00:38:21,760 | INFO     | ***************************************
[2025-11-29 16:38:53] 2025-11-30 00:38:21,760 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 16:38:53] 2025-11-30 00:38:21,760 | INFO     | ***************************************
[2025-11-29 16:38:53] 2025-11-30 00:38:21,760 | INFO     | 
[2025-11-29 16:38:53] 2025-11-30 00:38:21,763 | INFO     | architecture information:
[2025-11-29 16:38:53] 2025-11-30 00:38:21,769 | INFO     | executing command: cat /etc/os-release
[2025-11-29 16:38:53] 2025-11-30 00:38:21,865 | INFO     | cat /etc/os-release:
[2025-11-29 16:38:53] NAME="CentOS Linux"
[2025-11-29 16:38:53] VERSION="7 (Core)"
[2025-11-29 16:38:53] ID="centos"
[2025-11-29 16:38:53] ID_LIKE="rhel fedora"
[2025-11-29 16:38:53] VERSION_ID="7"
[2025-11-29 16:38:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 16:38:53] ANSI_COLOR="0;31"
[2025-11-29 16:38:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 16:38:53] HOME_URL="https://www.centos.org/"
[2025-11-29 16:38:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 16:38:53] 
[2025-11-29 16:38:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 16:38:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 16:38:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 16:38:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 16:38:53] 
[2025-11-29 16:38:53] 2025-11-30 00:38:21,865 | INFO     | ***************************************
[2025-11-29 16:38:53] 2025-11-30 00:38:22,369 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-29 16:38:53] 2025-11-30 00:38:22,467 | INFO     | sufficient remaining disk space (2131729842176 B)
[2025-11-29 16:38:53] 2025-11-30 00:38:22,467 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 16:38:53] 2025-11-30 00:38:22,468 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 16:38:53] 2025-11-30 00:38:22,468 | INFO     | update_server=False
[2025-11-29 16:38:53] 2025-11-30 00:38:22,468 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 16:38:53] 2025-11-30 00:38:22,468 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 16:38:53] 2025-11-30 00:38:22,468 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 16:38:53] 2025-11-30 00:38:22,468 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 16:38:53] 2025-11-30 00:38:22,468 | INFO     | aborting loop
[2025-11-29 16:38:53] 2025-11-30 00:38:23,179 | INFO     | all payload control threads have been joined
[2025-11-29 16:38:53] 2025-11-30 00:38:23,474 | INFO     | [job] retrieve thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:23,474 | INFO     | [job] job monitor thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:23,566 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:23,572 | INFO     | [payload] failed_post thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:23,575 | INFO     | all data control threads have been joined
[2025-11-29 16:38:53] 2025-11-30 00:38:23,982 | INFO     | all job control threads have been joined
[2025-11-29 16:38:53] 2025-11-30 00:38:24,124 | INFO     | [job] validate thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:24,183 | INFO     | [data] copytool_in thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:24,185 | INFO     | [payload] control thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:24,187 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:24,477 | INFO     | [data] copytool_out thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:24,582 | INFO     | [data] control thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:24,676 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:24,788 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:24,877 | INFO     | [payload] validate_post thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:24,989 | INFO     | [job] control thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:25,116 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 16:38:53] 2025-11-30 00:38:26,122 | INFO     | [job] queue monitor thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:26,484 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 16:38:53] 2025-11-30 00:38:31,475 | INFO     | [monitor] cgroup control has ended
[2025-11-29 16:38:53] 2025-11-30 00:38:32,442 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140169165408064)>', '<ExcThread(monitor, started 140168765875968)>']
[2025-11-29 16:38:53] 2025-11-30 00:38:37,468 | INFO     | all workflow threads have been joined
[2025-11-29 16:38:53] 2025-11-30 00:38:37,468 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 16:38:53] 2025-11-30 00:38:37,468 | INFO     | traces error code: 0
[2025-11-29 16:38:53] 2025-11-30 00:38:37,468 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 16:38:53] 2025-11-30 00:38:53,128 | INFO     | PID=210696 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-29 16:38:53] 2025-11-30 00:38:53,129 | INFO     | .. there are 35 such processes running
[2025-11-29 16:38:53] 2025-11-30 00:38:53,130 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 16:38:53] 2025-11-30 00:38:53,130 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 16:38:53] 2025-11-30 00:38:53,130 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 16:38:53] 2025-11-30 00:38:53,130 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 16:38:53] 2025-11-30 00:38:53,130 | INFO     | [monitor] control thread has ended
[2025-11-29 16:38:53] 2025-11-30 00:38:53,615 [wrapper] ==== pilot stdout END ====
[2025-11-29 16:38:53] 2025-11-30 00:38:53,622 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 16:38:53] 2025-11-30 00:38:53,624 [wrapper] pilotpid: 210696
[2025-11-29 16:38:53] 2025-11-30 00:38:53,634 [wrapper] Pilot exit status: 0
[2025-11-29 16:38:53] 2025-11-30 00:38:53,755 [wrapper] pandaids: 6897957722
[2025-11-29 16:38:53] 2025-11-30 00:38:53,841 [wrapper] cleanup supervisor_pilot  210702 210697
[2025-11-29 16:38:53] 2025-11-30 00:38:53,843 [wrapper] Test setup, not cleaning
[2025-11-29 16:38:53] 2025-11-30 00:38:53,845 [wrapper] apfmon messages muted
[2025-11-29 16:38:53] 2025-11-30 00:38:53,847 [wrapper] ==== wrapper stdout END ====
[2025-11-29 16:38:53] 2025-11-30 00:38:53,849 [wrapper] ==== wrapper stderr END ====
[2025-11-29 16:38:53]  *** Error codes and diagnostics ***
[2025-11-29 16:38:53]     "exeErrorCode": 65,
[2025-11-29 16:38:53]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-29 16:38:53]     "pilotErrorCode": 1305,
[2025-11-29 16:38:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-29 16:38:53]  *** Listing of results directory ***
[2025-11-29 16:38:53] total 370276
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc    576529 Nov 28 14:41 pilot3.tar.gz
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc      5112 Nov 28 14:43 queuedata.json
[2025-11-29 16:38:53] -rwx------. 1 boinc boinc     36292 Nov 28 14:44 runpilot2-wrapper.sh
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc       100 Nov 29 16:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 16:38:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 16:30 run_atlas
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc       105 Nov 29 16:30 job.xml
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc      6592 Nov 29 16:30 init_data.xml
[2025-11-29 16:38:53] -rw-r--r--. 2 boinc boinc 374919865 Nov 29 16:30 EVNT.47528880._000068.pool.root.1
[2025-11-29 16:38:53] -rw-r--r--. 2 boinc boinc     15847 Nov 29 16:30 start_atlas.sh
[2025-11-29 16:38:53] drwxrwx--x. 2 boinc boinc      4096 Nov 29 16:30 shared
[2025-11-29 16:38:53] -rw-r--r--. 2 boinc boinc    590129 Nov 29 16:30 input.tar.gz
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc         0 Nov 29 16:30 boinc_lockfile
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc      2879 Nov 29 16:30 pandaJob.out
[2025-11-29 16:38:53] -rw-------. 1 boinc boinc    991844 Nov 29 16:31 agis_schedconf.cvmfs.json
[2025-11-29 16:38:53] -rw-------. 1 boinc boinc   1516240 Nov 29 16:31 agis_ddmendpoints.agis.ALL.json
[2025-11-29 16:38:53] drwx------. 5 boinc boinc      4096 Nov 29 16:31 pilot3
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc       525 Nov 29 16:35 boinc_task_state.xml
[2025-11-29 16:38:53] -rw-------. 1 boinc boinc       997 Nov 29 16:35 memory_monitor_summary.json
[2025-11-29 16:38:53] -rw-------. 1 boinc boinc     52203 Nov 29 16:35 log.47538121._000680.job.log.tgz.1
[2025-11-29 16:38:53] -rw-------. 1 boinc boinc      9921 Nov 29 16:38 heartbeat.json
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc      8192 Nov 29 16:38 boinc_mmap_file
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc        23 Nov 29 16:38 wrapper_checkpoint.txt
[2025-11-29 16:38:53] -rw-------. 1 boinc boinc       822 Nov 29 16:38 pilotlog.txt
[2025-11-29 16:38:53] -rw-------. 1 boinc boinc        95 Nov 29 16:38 pilot_heartbeat.json
[2025-11-29 16:38:53] -rw-------. 1 boinc boinc    114739 Nov 29 16:38 log.47538121._000680.job.log.1
[2025-11-29 16:38:53] -rw-------. 1 boinc boinc       186 Nov 29 16:38 output.list
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc       620 Nov 29 16:38 runtime_log
[2025-11-29 16:38:53] -rw-------. 1 boinc boinc    184320 Nov 29 16:38 result.tar.gz
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc      8636 Nov 29 16:38 runtime_log.err
[2025-11-29 16:38:53] -rw-------. 1 boinc boinc       645 Nov 29 16:38 hgINDmHNMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgXLKDmNDT72m.diag
[2025-11-29 16:38:53] -rw-r--r--. 1 boinc boinc     22584 Nov 29 16:38 stderr.txt
[2025-11-29 16:38:54] No HITS result produced
[2025-11-29 16:38:54]  *** Contents of shared directory: ***
[2025-11-29 16:38:54] total 366916
[2025-11-29 16:38:54] -rw-r--r--. 2 boinc boinc 374919865 Nov 29 16:30 ATLAS.root_0
[2025-11-29 16:38:54] -rw-r--r--. 2 boinc boinc     15847 Nov 29 16:30 start_atlas.sh
[2025-11-29 16:38:54] -rw-r--r--. 2 boinc boinc    590129 Nov 29 16:30 input.tar.gz
[2025-11-29 16:38:54] -rw-------. 1 boinc boinc    184320 Nov 29 16:38 result.tar.gz
16:38:55 (206852): run_atlas exited; CPU time 80.676076
16:38:55 (206852): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN