Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:55:28 (8955): wrapper (7.7.26015): starting
18:55:28 (8955): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 18:55:28] Arguments: --nthreads 8
[2025-11-29 18:55:28] Threads: 8
[2025-11-29 18:55:28] Checking for CVMFS
[2025-11-29 18:55:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 18:55:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 18:55:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 18:55:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 18:55:29] 2.11.2.0 7040 122690 143832 153461 0 82 18268713 18432000 1885 130560 0 89228087 99.975 5055170 31383 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 18:55:29] CVMFS is ok
[2025-11-29 18:55:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 18:55:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 18:55:29] Further information can be found at the LHC@home message board.
[2025-11-29 18:55:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 18:55:29] Checking for apptainer binary...
[2025-11-29 18:55:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 18:55:29] Running /usr/bin/apptainer --version
[2025-11-29 18:55:29] apptainer version 1.3.2-1.el7
[2025-11-29 18:55:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 18:55:29] c-206-7.aglt2.org
[2025-11-29 18:55:29] apptainer works
[2025-11-29 18:55:29] Set ATHENA_PROC_NUMBER=8
[2025-11-29 18:55:29] Set ATHENA_CORE_NUMBER=8
[2025-11-29 18:55:29] Starting ATLAS job with PandaID=6900935623
[2025-11-29 18:55:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:29:09 (28313): wrapper (7.7.26015): starting
10:29:09 (28313): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 10:29:09] Arguments: --nthreads 8
[2025-11-30 10:29:09] Threads: 8
[2025-11-30 10:29:09] This job has been restarted, cleaning up previous attempt
[2025-11-30 10:29:09] Checking for CVMFS
[2025-11-30 10:29:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 10:29:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 10:29:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 10:29:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 10:29:09] 2.11.2.0 7040 123624 143072 153485 3 69 18376587 18432001 1 130560 0 90074073 99.975 5089359 31412 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 10:29:09] CVMFS is ok
[2025-11-30 10:29:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 10:29:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 10:29:09] Further information can be found at the LHC@home message board.
[2025-11-30 10:29:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 10:29:09] Checking for apptainer binary...
[2025-11-30 10:29:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 10:29:09] Running /usr/bin/apptainer --version
[2025-11-30 10:29:09] apptainer version 1.3.2-1.el7
[2025-11-30 10:29:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 10:29:10] c-206-7.aglt2.org
[2025-11-30 10:29:10] apptainer works
[2025-11-30 10:29:10] Set ATHENA_PROC_NUMBER=8
[2025-11-30 10:29:10] Set ATHENA_CORE_NUMBER=8
[2025-11-30 10:29:10] Starting ATLAS job with PandaID=6900935623
[2025-11-30 10:29:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 06:04:27]  *** The last 200 lines of the pilot log: ***
[2025-12-01 06:04:27] 2025-12-01 11:03:25,116 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2400.2916666666665
[2025-12-01 06:04:27] 2025-12-01 11:03:25,120 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6900935623/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 06:04:27] 2025-12-01 11:03:25,121 | INFO     | extracted standard info from prmon json
[2025-12-01 06:04:27] 2025-12-01 11:03:25,121 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 06:04:27] 2025-12-01 11:03:25,121 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 06:04:27] 2025-12-01 11:03:25,144 | INFO     | fitting pss+swap vs Time
[2025-12-01 06:04:27] 2025-12-01 11:03:25,146 | INFO     | sum of square deviations: 477775311557.88763
[2025-12-01 06:04:27] 2025-12-01 11:03:25,167 | INFO     | monitor loop #5040: job 0:6900935623 is in state 'finished'
[2025-12-01 06:04:27] 2025-12-01 11:03:25,170 | INFO     | sum of deviations: 2098469987822.4612
[2025-12-01 06:04:27] 2025-12-01 11:03:25,174 | INFO     | mean x: 1764551787.5497835
[2025-12-01 06:04:27] 2025-12-01 11:03:25,174 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 06:04:27] 2025-12-01 11:03:25,174 | INFO     | mean y: 2876498.252813853
[2025-12-01 06:04:27] 2025-12-01 11:03:25,175 | INFO     | intersect: -7747333440.510535
[2025-12-01 06:04:27] 2025-12-01 11:03:25,176 | INFO     | chi2: 5.312204571159732
[2025-12-01 06:04:27] 2025-12-01 11:03:25,177 | INFO     | sum of square deviations: 471597445208.86957
[2025-12-01 06:04:27] 2025-12-01 11:03:25,212 | INFO     | sum of deviations: 2456506505122.2515
[2025-12-01 06:04:27] 2025-12-01 11:03:25,213 | INFO     | mean x: 1764551635.0521739
[2025-12-01 06:04:27] 2025-12-01 11:03:25,213 | INFO     | mean y: 2885332.179130435
[2025-12-01 06:04:27] 2025-12-01 11:03:25,213 | INFO     | intersect: -9188497306.057957
[2025-12-01 06:04:27] 2025-12-01 11:03:25,214 | INFO     | chi2: 2.5230668589299188
[2025-12-01 06:04:27] 2025-12-01 11:03:25,214 | INFO     | current chi2=2.5230668589299188 (change=52.504335532788105 %)
[2025-12-01 06:04:27] 2025-12-01 11:03:25,215 | INFO     | sum of square deviations: 465473068234.83875
[2025-12-01 06:04:27] 2025-12-01 11:03:25,253 | INFO     | sum of deviations: 2565941122606.3735
[2025-12-01 06:04:27] 2025-12-01 11:03:25,254 | INFO     | mean x: 1764551482.5545852
[2025-12-01 06:04:27] 2025-12-01 11:03:25,254 | INFO     | mean y: 2888054.6340611354
[2025-12-01 06:04:27] 2025-12-01 11:03:25,254 | INFO     | intersect: -9724280971.949743
[2025-12-01 06:04:27] 2025-12-01 11:03:25,255 | INFO     | chi2: 2.138326443781145
[2025-12-01 06:04:27] 2025-12-01 11:03:25,255 | INFO     | current chi2=2.138326443781145 (change=15.248918742959896 %)
[2025-12-01 06:04:27] 2025-12-01 11:03:25,255 | INFO     | right removable region: 1144
[2025-12-01 06:04:27] 2025-12-01 11:03:25,256 | INFO     | sum of square deviations: 471597128069.9726
[2025-12-01 06:04:27] 2025-12-01 11:03:25,280 | INFO     | sum of deviations: 1825621771349.3523
[2025-12-01 06:04:27] 2025-12-01 11:03:25,280 | INFO     | mean x: 1764551940.0513043
[2025-12-01 06:04:27] 2025-12-01 11:03:25,280 | INFO     | mean y: 2883223.3669565218
[2025-12-01 06:04:27] 2025-12-01 11:03:25,280 | INFO     | intersect: -6827956590.306435
[2025-12-01 06:04:27] 2025-12-01 11:03:25,281 | INFO     | chi2: 3.408556620627487
[2025-12-01 06:04:27] 2025-12-01 11:03:25,281 | INFO     | current chi2=3.408556620627487 (change=35.83536599601718 %)
[2025-12-01 06:04:27] 2025-12-01 11:03:25,282 | INFO     | sum of square deviations: 465472434201.0541
[2025-12-01 06:04:27] 2025-12-01 11:03:25,306 | INFO     | sum of deviations: 1753943822467.5476
[2025-12-01 06:04:27] 2025-12-01 11:03:25,306 | INFO     | mean x: 1764552092.5528383
[2025-12-01 06:04:27] 2025-12-01 11:03:25,306 | INFO     | mean y: 2885007.676855895
[2025-12-01 06:04:27] 2025-12-01 11:03:25,307 | INFO     | intersect: -6646112902.301261
[2025-12-01 06:04:27] 2025-12-01 11:03:25,307 | INFO     | chi2: 3.363116490299641
[2025-12-01 06:04:27] 2025-12-01 11:03:25,308 | INFO     | current chi2=3.363116490299641 (change=1.3331194222462657 %)
[2025-12-01 06:04:27] 2025-12-01 11:03:25,308 | INFO     | left removable region: 20
[2025-12-01 06:04:27] 2025-12-01 11:03:25,309 | INFO     | sum of square deviations: 440328615262.35565
[2025-12-01 06:04:27] 2025-12-01 11:03:25,331 | INFO     | sum of deviations: 2138764218901.3728
[2025-12-01 06:04:27] 2025-12-01 11:03:25,331 | INFO     | mean x: 1764552062.0569396
[2025-12-01 06:04:27] 2025-12-01 11:03:25,332 | INFO     | mean y: 2899257.259786477
[2025-12-01 06:04:27] 2025-12-01 11:03:25,332 | INFO     | intersect: -8567883294.465642
[2025-12-01 06:04:27] 2025-12-01 11:03:25,333 | INFO     | chi2: 0.14652618382674956
[2025-12-01 06:04:27] 2025-12-01 11:03:25,333 | INFO     | current memory leak: 4.86 B/s (using 1124 data points, chi2=0.15)
[2025-12-01 06:04:27] 2025-12-01 11:03:25,334 | INFO     | could have reported an average CPU frequency of 2574 MHz (42 samples)
[2025-12-01 06:04:27] 2025-12-01 11:03:25,335 | INFO     | ..............................
[2025-12-01 06:04:27] 2025-12-01 11:03:25,335 | INFO     | . Timing measurements:
[2025-12-01 06:04:27] 2025-12-01 11:03:25,335 | INFO     | . get job = 0 s
[2025-12-01 06:04:27] 2025-12-01 11:03:25,335 | INFO     | . initial setup = 2 s
[2025-12-01 06:04:27] 2025-12-01 11:03:25,335 | INFO     | . payload setup = 6 s
[2025-12-01 06:04:27] 2025-12-01 11:03:25,336 | INFO     | . stage-in = 0 s
[2025-12-01 06:04:27] 2025-12-01 11:03:25,336 | INFO     | . payload execution = 70405 s
[2025-12-01 06:04:27] 2025-12-01 11:03:25,336 | INFO     | . stage-out = 3 s
[2025-12-01 06:04:27] 2025-12-01 11:03:25,336 | INFO     | . log creation = 0 s
[2025-12-01 06:04:27] 2025-12-01 11:03:25,336 | INFO     | ..............................
[2025-12-01 06:04:27] 2025-12-01 11:03:25,473 | INFO     | 
[2025-12-01 06:04:27] 2025-12-01 11:03:25,474 | INFO     | job summary report
[2025-12-01 06:04:27] 2025-12-01 11:03:25,474 | INFO     | --------------------------------------------------
[2025-12-01 06:04:27] 2025-12-01 11:03:25,474 | INFO     | PanDA job id: 6900935623
[2025-12-01 06:04:27] 2025-12-01 11:03:25,474 | INFO     | task id: 47556185
[2025-12-01 06:04:27] 2025-12-01 11:03:25,474 | INFO     | errors: (none)
[2025-12-01 06:04:27] 2025-12-01 11:03:25,474 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 06:04:27] 2025-12-01 11:03:25,475 | INFO     | pilot state: finished 
[2025-12-01 06:04:27] 2025-12-01 11:03:25,475 | INFO     | transexitcode: 0
[2025-12-01 06:04:27] 2025-12-01 11:03:25,475 | INFO     | exeerrorcode: 0
[2025-12-01 06:04:27] 2025-12-01 11:03:25,475 | INFO     | exeerrordiag: 
[2025-12-01 06:04:27] 2025-12-01 11:03:25,475 | INFO     | exitcode: 0
[2025-12-01 06:04:27] 2025-12-01 11:03:25,476 | INFO     | exitmsg: OK
[2025-12-01 06:04:27] 2025-12-01 11:03:25,476 | INFO     | cpuconsumptiontime: 550221 s
[2025-12-01 06:04:27] 2025-12-01 11:03:25,476 | INFO     | nevents: 1000
[2025-12-01 06:04:27] 2025-12-01 11:03:25,476 | INFO     | neventsw: 0
[2025-12-01 06:04:27] 2025-12-01 11:03:25,476 | INFO     | pid: 26117
[2025-12-01 06:04:27] 2025-12-01 11:03:25,476 | INFO     | pgrp: 26117
[2025-12-01 06:04:27] 2025-12-01 11:03:25,477 | INFO     | corecount: 8
[2025-12-01 06:04:27] 2025-12-01 11:03:25,477 | INFO     | event service: False
[2025-12-01 06:04:27] 2025-12-01 11:03:25,477 | INFO     | sizes: {0: 2284145, 1: 2284344, 5: 2284606, 11: 2284662, 70414: 2341375, 70419: 2350369, 70421: 2350553, 70426: 2350799}
[2025-12-01 06:04:27] 2025-12-01 11:03:25,477 | INFO     | --------------------------------------------------
[2025-12-01 06:04:27] 2025-12-01 11:03:25,477 | INFO     | 
[2025-12-01 06:04:27] 2025-12-01 11:03:25,477 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-01 06:04:27] 2025-12-01 11:03:25,497 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,497 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,497 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,498 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,498 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,498 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,498 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,498 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,499 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,499 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,499 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,499 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,499 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,499 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,500 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,500 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,500 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,500 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 06:04:27] 2025-12-01 11:03:25,500 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,501 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 06:04:27] 2025-12-01 11:03:25,501 | INFO     | job 6900935623 has completed (purged errors)
[2025-12-01 06:04:27] 2025-12-01 11:03:25,501 | INFO     | overall cleanup function is called
[2025-12-01 06:04:27] 2025-12-01 11:03:26,517 | INFO     | --- collectZombieJob: --- 10, [26117]
[2025-12-01 06:04:27] 2025-12-01 11:03:26,518 | INFO     | zombie collector waiting for pid 26117
[2025-12-01 06:04:27] 2025-12-01 11:03:26,518 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 06:04:27] 2025-12-01 11:03:26,518 | INFO     | collected zombie processes
[2025-12-01 06:04:27] 2025-12-01 11:03:26,518 | INFO     | will attempt to kill all subprocesses of pid=26117
[2025-12-01 06:04:27] 2025-12-01 11:03:26,693 | INFO     | process IDs to be killed: [26117] (in reverse order)
[2025-12-01 06:04:27] 2025-12-01 11:03:26,758 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 06:04:27] 2025-12-01 11:03:26,758 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 06:04:27] 2025-12-01 11:03:26,764 | INFO     | did not find any defunct processes belonging to 26117
[2025-12-01 06:04:27] 2025-12-01 11:03:26,769 | INFO     | did not find any defunct processes belonging to 26117
[2025-12-01 06:04:27] 2025-12-01 11:03:26,771 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 06:04:27] 2025-12-01 11:03:26,771 | INFO     | ready for new job
[2025-12-01 06:04:27] 2025-12-01 11:03:26,771 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 06:04:27] 2025-12-01 11:03:26,776 | INFO     | ***************************************
[2025-12-01 06:04:27] 2025-12-01 11:03:26,777 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 06:04:27] 2025-12-01 11:03:26,777 | INFO     | ***************************************
[2025-12-01 06:04:27] 2025-12-01 11:03:26,777 | INFO     | 
[2025-12-01 06:04:27] 2025-12-01 11:03:26,778 | INFO     | architecture information:
[2025-12-01 06:04:27] 2025-12-01 11:03:26,779 | INFO     | executing command: cat /etc/os-release
[2025-12-01 06:04:27] 2025-12-01 11:03:26,795 | INFO     | cat /etc/os-release:
[2025-12-01 06:04:27] NAME="CentOS Linux"
[2025-12-01 06:04:27] VERSION="7 (Core)"
[2025-12-01 06:04:27] ID="centos"
[2025-12-01 06:04:27] ID_LIKE="rhel fedora"
[2025-12-01 06:04:27] VERSION_ID="7"
[2025-12-01 06:04:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 06:04:27] ANSI_COLOR="0;31"
[2025-12-01 06:04:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 06:04:27] HOME_URL="https://www.centos.org/"
[2025-12-01 06:04:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 06:04:27] 
[2025-12-01 06:04:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 06:04:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 06:04:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 06:04:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 06:04:27] 
[2025-12-01 06:04:27] 2025-12-01 11:03:26,795 | INFO     | ***************************************
[2025-12-01 06:04:27] 2025-12-01 11:03:27,298 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-01 06:04:27] 2025-12-01 11:03:27,324 | INFO     | sufficient remaining disk space (26592935936 B)
[2025-12-01 06:04:27] 2025-12-01 11:03:27,324 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 06:04:27] 2025-12-01 11:03:27,324 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 06:04:27] 2025-12-01 11:03:27,325 | INFO     | update_server=False
[2025-12-01 06:04:27] 2025-12-01 11:03:27,325 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 06:04:27] 2025-12-01 11:03:27,325 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 06:04:27] 2025-12-01 11:03:27,325 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 06:04:27] 2025-12-01 11:03:27,325 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 06:04:27] 2025-12-01 11:03:27,678 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-01 06:04:27] 2025-12-01 11:03:27,678 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-01 06:04:27] 2025-12-01 11:03:27,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 06:04:27] 2025-12-01 11:03:27,678 | INFO     | will abort loop
[2025-12-01 06:04:27] 2025-12-01 11:03:27,852 | INFO     | all data control threads have been joined
[2025-12-01 06:04:27] 2025-12-01 11:03:27,992 | INFO     | all payload control threads have been joined
[2025-12-01 06:04:27] 2025-12-01 11:03:28,330 | INFO     | [job] queue monitor thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:28,333 | INFO     | [job] retrieve thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:28,411 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:28,490 | INFO     | [data] copytool_in thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:28,504 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:28,509 | INFO     | [job] validate thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:28,594 | INFO     | [payload] failed_post thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:28,682 | INFO     | [job] job monitor thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:28,723 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:28,765 | INFO     | all job control threads have been joined
[2025-12-01 06:04:27] 2025-12-01 11:03:28,857 | INFO     | [data] control thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:28,985 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:28,999 | INFO     | [payload] control thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:29,335 | INFO     | [data] copytool_out thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:29,771 | INFO     | [job] control thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:29,798 | INFO     | [payload] validate_post thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:31,335 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 06:04:27] 2025-12-01 11:03:57,603 | INFO     | PID=7218 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 06:04:27] 2025-12-01 11:03:57,604 | INFO     | .. there are 3 such processes running
[2025-12-01 06:04:27] 2025-12-01 11:03:57,604 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 06:04:27] 2025-12-01 11:03:57,604 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 06:04:27] 2025-12-01 11:03:57,604 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 06:04:27] 2025-12-01 11:04:20,588 | INFO     | [monitor] cgroup control has ended
[2025-12-01 06:04:27] 2025-12-01 11:04:22,615 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139834448873280)>', '<ExcThread(monitor, started 139833263519488)>']
[2025-12-01 06:04:27] 2025-12-01 11:04:22,735 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 06:04:27] 2025-12-01 11:04:22,735 | INFO     | [monitor] control thread has ended
[2025-12-01 06:04:27] 2025-12-01 11:04:27,641 | INFO     | all workflow threads have been joined
[2025-12-01 06:04:27] 2025-12-01 11:04:27,641 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 06:04:27] 2025-12-01 11:04:27,641 | INFO     | traces error code: 0
[2025-12-01 06:04:27] 2025-12-01 11:04:27,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 06:04:27] 2025-12-01 11:04:27,757 [wrapper] ==== pilot stdout END ====
[2025-12-01 06:04:27] 2025-12-01 11:04:27,760 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 06:04:27] 2025-12-01 11:04:27,761 [wrapper] pilotpid: 7218
[2025-12-01 06:04:27] 2025-12-01 11:04:27,764 [wrapper] Pilot exit status: 0
[2025-12-01 06:04:27] 2025-12-01 11:04:27,770 [wrapper] pandaids: 6900935623 6900935623
[2025-12-01 06:04:27] 2025-12-01 11:04:27,811 [wrapper] cleanup supervisor_pilot  8786 7219
[2025-12-01 06:04:27] 2025-12-01 11:04:27,813 [wrapper] Test setup, not cleaning
[2025-12-01 06:04:27] 2025-12-01 11:04:27,815 [wrapper] apfmon messages muted
[2025-12-01 06:04:27] 2025-12-01 11:04:27,817 [wrapper] ==== wrapper stdout END ====
[2025-12-01 06:04:27] 2025-12-01 11:04:27,819 [wrapper] ==== wrapper stderr END ====
[2025-12-01 06:04:27]  *** Error codes and diagnostics ***
[2025-12-01 06:04:27]     "exeErrorCode": 0,
[2025-12-01 06:04:27]     "exeErrorDiag": "",
[2025-12-01 06:04:27]     "pilotErrorCode": 0,
[2025-12-01 06:04:27]     "pilotErrorDiag": "",
[2025-12-01 06:04:27]  *** Listing of results directory ***
[2025-12-01 06:04:27] total 1722452
[2025-12-01 06:04:27] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas    576529 Nov 27 19:58 pilot3.tar.gz
[2025-12-01 06:04:27] -rwx------ 1 boincer umatlas     36292 Nov 27 20:00 runpilot2-wrapper.sh
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas      5112 Nov 27 20:01 queuedata.json
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas       100 Nov 29 18:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 06:04:27] -rwxr-xr-x 1 boincer umatlas      7986 Nov 29 18:55 run_atlas
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas       105 Nov 29 18:55 job.xml
[2025-12-01 06:04:27] -rw-r--r-- 3 boincer umatlas 409666930 Nov 29 18:55 EVNT.47483658._004466.pool.root.1
[2025-12-01 06:04:27] -rw-r--r-- 3 boincer umatlas 409666930 Nov 29 18:55 ATLAS.root_0
[2025-12-01 06:04:27] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 18:55 start_atlas.sh
[2025-12-01 06:04:27] drwxrwx--x 2 boincer umatlas      4096 Nov 29 18:55 shared
[2025-12-01 06:04:27] -rw-r--r-- 2 boincer umatlas    590114 Nov 29 18:55 input.tar.gz
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas         0 Nov 29 18:55 boinc_lockfile
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas      2787 Nov 30 10:29 pandaJob.out
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas        57 Nov 30 10:29 setup.sh.local
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas    991791 Nov 30 10:29 agis_schedconf.cvmfs.json
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas       534 Dec  1 05:51 boinc_task_state.xml
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas 916398319 Dec  1 06:02 HITS.47556185._002297.pool.root.1
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas      1064 Dec  1 06:03 memory_monitor_summary.json
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas   1516240 Dec  1 06:03 agis_ddmendpoints.agis.ALL.json
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas   2317099 Dec  1 06:03 log.47556185._002297.job.log.tgz.1
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas        96 Dec  1 06:03 pilot_heartbeat.json
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas      8659 Dec  1 06:03 heartbeat.json
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas      5954 Dec  1 06:04 init_data.xml
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 06:04 boinc_mmap_file
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas        30 Dec  1 06:04 wrapper_checkpoint.txt
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas      5006 Dec  1 06:04 pilotlog.txt
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas   9746313 Dec  1 06:04 log.47556185._002297.job.log.1
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas       353 Dec  1 06:04 output.list
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas       620 Dec  1 06:04 runtime_log
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas  12083200 Dec  1 06:04 result.tar.gz
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas      9423 Dec  1 06:04 runtime_log.err
[2025-12-01 06:04:27] -rw------- 1 boincer umatlas       792 Dec  1 06:04 ethMDmo11i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmO1KKDmEUYusm.diag
[2025-12-01 06:04:27] -rw-r--r-- 1 boincer umatlas     23474 Dec  1 06:04 stderr.txt
[2025-12-01 06:04:28] HITS file was successfully produced:
[2025-12-01 06:04:28] -rw------- 1 boincer umatlas 916398319 Dec  1 06:02 shared/HITS.pool.root.1
[2025-12-01 06:04:28]  *** Contents of shared directory: ***
[2025-12-01 06:04:28] total 1307396
[2025-12-01 06:04:28] -rw-r--r-- 3 boincer umatlas 409666930 Nov 29 18:55 ATLAS.root_0
[2025-12-01 06:04:28] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 18:55 start_atlas.sh
[2025-12-01 06:04:28] -rw-r--r-- 2 boincer umatlas    590114 Nov 29 18:55 input.tar.gz
[2025-12-01 06:04:28] -rw------- 1 boincer umatlas 916398319 Dec  1 06:02 HITS.pool.root.1
[2025-12-01 06:04:28] -rw------- 1 boincer umatlas  12083200 Dec  1 06:04 result.tar.gz
06:04:29 (28313): run_atlas exited; CPU time 549647.091107
06:04:29 (28313): called boinc_finish(0)

</stderr_txt>
]]>

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