Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:35:06 (609157): wrapper (7.7.26015): starting
16:35:06 (609157): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 16:35:06] Arguments: --nthreads 12
[2025-11-29 16:35:06] Threads: 12
[2025-11-29 16:35:06] Checking for CVMFS
[2025-11-29 16:35:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 16:35:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 16:35:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 16:35:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 16:35:08] 2.11.5.0 394429 33114 221028 153462 2 83 28144903 45568001 17454 130560 0 253989283 99.750 179815222 21901 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-29 16:35:08] CVMFS is ok
[2025-11-29 16:35:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 16:35:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 16:35:08] Further information can be found at the LHC@home message board.
[2025-11-29 16:35:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 16:35:08] Checking for apptainer binary...
[2025-11-29 16:35:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 16:35:08] Running /usr/bin/apptainer --version
[2025-11-29 16:35:09] apptainer version 1.4.1-1.el9
[2025-11-29 16:35:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 16:35:20] wns0074.triumf.lcg
[2025-11-29 16:35:20] apptainer works
[2025-11-29 16:35:20] Set ATHENA_PROC_NUMBER=12
[2025-11-29 16:35:20] Set ATHENA_CORE_NUMBER=12
[2025-11-29 16:35:20] Starting ATLAS job with PandaID=6897914527
[2025-11-29 16:35:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 16:48:38]  *** The last 200 lines of the pilot log: ***
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | could have reported an average CPU frequency of 1406 MHz (4 samples)
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | ..............................
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | . Timing measurements:
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | . get job = 0 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | . initial setup = 7 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | . payload setup = 94 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | . stage-in = 0 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | . payload execution = 329 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | . stage-out = 2 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | . log creation = 0 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | ..............................
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 16:48:38] 2025-11-30 00:47:40,622 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897914527/pilotlog.txt
[2025-11-29 16:48:38] 2025-11-30 00:47:40,727 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-29 16:48:38] - Log from pilotlog.txt -
[2025-11-29 16:48:38] 2025-11-30 00:47:40,596 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897914527/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 16:48:38] 2025-11-30 00:47:40,598 | INFO     | extracted standard info from prmon json
[2025-11-29 16:48:38] 2025-11-30 00:47:40,598 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 16:48:38] 2025-11-30 00:47:40,598 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 16:48:38] 2025-11-30 00:47:40,599 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 16:48:38] 2025-11-30 00:47:40,599 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 16:48:38] 2025-11-30 00:47:40,600 | WARNING  | wrong length of table data, x=[1764463216.0, 1764463277.0, 1764463338.0, 1764463399.0, 1764463460.0], y=[1952.0, 138911.0, 599057.0, 849662.0, 748933.0] (must be s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | could have reported an average CPU frequency of 1406 MHz (4 samples)
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | ..............................
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | . Timing measurements:
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | . get job = 0 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | . initial setup = 7 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | . payload setup = 94 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | . stage-in = 0 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | . payload execution = 329 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | . stage-out = 2 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | . log creation = 0 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | ..............................
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 16:48:38] 2025-11-30 00:47:40,622 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897914527/pilotlog.txt
[2025-11-29 16:48:38] 2025-11-30 00:47:40,728 | WARNING  | 
[2025-11-29 16:48:38] [begin log extracts]
[2025-11-29 16:48:38] - Log from pilotlog.txt -
[2025-11-29 16:48:38] 2025-11-30 00:47:40,596 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897914527/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 16:48:38] 2025-11-30 00:47:40,598 | INFO     | extracted standard info from prmon json
[2025-11-29 16:48:38] 2025-11-30 00:47:40,598 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 16:48:38] 2025-11-30 00:47:40,598 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 16:48:38] 2025-11-30 00:47:40,599 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 16:48:38] 2025-11-30 00:47:40,599 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 16:48:38] 2025-11-30 00:47:40,600 | WARNING  | wrong length of table data, x=[1764463216.0, 1764463277.0, 1764463338.0, 1764463399.0, 1764463460.0], y=[1952.0, 138911.0, 599057.0, 849662.0, 748933.0] (must be s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | could have reported an average CPU frequency of 1406 MHz (4 samples)
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | ..............................
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | . Timing measurements:
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | . get job = 0 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | . initial setup = 7 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,601 | INFO     | . payload setup = 94 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | . stage-in = 0 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | . payload execution = 329 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | . stage-out = 2 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | . log creation = 0 s
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | ..............................
[2025-11-29 16:48:38] 2025-11-30 00:47:40,621 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 16:48:38] 2025-11-30 00:47:40,622 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897914527/pilotlog.txt
[2025-11-29 16:48:38] [end log extracts]
[2025-11-29 16:48:38] 2025-11-30 00:47:40,728 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-29 16:48:38] 2025-11-30 00:47:40,729 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-29 16:48:38] 2025-11-30 00:47:41,215 | INFO     | 
[2025-11-29 16:48:38] 2025-11-30 00:47:41,215 | INFO     | job summary report
[2025-11-29 16:48:38] 2025-11-30 00:47:41,215 | INFO     | --------------------------------------------------
[2025-11-29 16:48:38] 2025-11-30 00:47:41,215 | INFO     | PanDA job id: 6897914527
[2025-11-29 16:48:38] 2025-11-30 00:47:41,215 | INFO     | task id: 47538121
[2025-11-29 16:48:38] 2025-11-30 00:47:41,215 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-29 16:44:44,657 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-29 16:48:38] 2025-11-30 00:47:41,215 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-29 16:48:38] 2025-11-30 00:47:41,216 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 16:48:38] 2025-11-30 00:47:41,216 | INFO     | pilot state: failed 
[2025-11-29 16:48:38] 2025-11-30 00:47:41,216 | INFO     | transexitcode: 65
[2025-11-29 16:48:38] 2025-11-30 00:47:41,216 | INFO     | exeerrorcode: 65
[2025-11-29 16:48:38] 2025-11-30 00:47:41,216 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-29 16:48:38] 2025-11-30 00:47:41,216 | INFO     | exitcode: 65
[2025-11-29 16:48:38] 2025-11-30 00:47:41,216 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-29 16:48:38] 2025-11-30 00:47:41,216 | INFO     | cpuconsumptiontime: 109 s
[2025-11-29 16:48:38] 2025-11-30 00:47:41,216 | INFO     | nevents: 0
[2025-11-29 16:48:38] 2025-11-30 00:47:41,216 | INFO     | neventsw: 0
[2025-11-29 16:48:38] 2025-11-30 00:47:41,216 | INFO     | pid: 621334
[2025-11-29 16:48:38] 2025-11-30 00:47:41,216 | INFO     | pgrp: 621334
[2025-11-29 16:48:38] 2025-11-30 00:47:41,217 | INFO     | corecount: 12
[2025-11-29 16:48:38] 2025-11-30 00:47:41,217 | INFO     | event service: False
[2025-11-29 16:48:38] 2025-11-30 00:47:41,217 | INFO     | sizes: {0: 2284215, 1: 2284271, 2: 2284327, 3: 2284498, 4: 2284526, 15: 2284554, 26: 2284710, 37: 2284738, 40: 2285028, 48: 2285056, 426: 2306469, 427: 2306753, 43
[2025-11-29 16:48:38] 2025-11-30 00:47:41,217 | INFO     | --------------------------------------------------
[2025-11-29 16:48:38] 2025-11-30 00:47:41,217 | INFO     | 
[2025-11-29 16:48:38] 2025-11-30 00:47:41,217 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-29 16:48:38] 2025-11-30 00:47:41,331 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,331 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,331 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,331 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,332 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,332 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,333 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 16:48:38] 2025-11-30 00:47:41,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 16:48:38] 2025-11-30 00:47:41,333 | INFO     | job 6897914527 has completed (purged errors)
[2025-11-29 16:48:38] 2025-11-30 00:47:41,333 | INFO     | overall cleanup function is called
[2025-11-29 16:48:38] 2025-11-30 00:47:41,714 | INFO     | PID=613307 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-29 16:48:38] 2025-11-30 00:47:41,714 | INFO     | .. there are 42 such processes running
[2025-11-29 16:48:38] 2025-11-30 00:47:42,355 | INFO     | --- collectZombieJob: --- 10, [621334]
[2025-11-29 16:48:38] 2025-11-30 00:47:42,356 | INFO     | zombie collector waiting for pid 621334
[2025-11-29 16:48:38] 2025-11-30 00:47:42,356 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 16:48:38] 2025-11-30 00:47:42,356 | INFO     | collected zombie processes
[2025-11-29 16:48:38] 2025-11-30 00:47:42,356 | INFO     | will attempt to kill all subprocesses of pid=621334
[2025-11-29 16:48:38] 2025-11-30 00:47:43,135 | INFO     | process IDs to be killed: [621334] (in reverse order)
[2025-11-29 16:48:38] 2025-11-30 00:47:43,543 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 16:48:38] 2025-11-30 00:47:43,544 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 16:48:38] 2025-11-30 00:47:43,570 | INFO     | did not find any defunct processes belonging to 621334
[2025-11-29 16:48:38] 2025-11-30 00:47:43,610 | INFO     | did not find any defunct processes belonging to 621334
[2025-11-29 16:48:38] 2025-11-30 00:47:43,611 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 16:48:38] 2025-11-30 00:47:43,612 | INFO     | ready for new job
[2025-11-29 16:48:38] 2025-11-30 00:47:43,612 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 16:48:38] 2025-11-30 00:47:43,620 | INFO     | ***************************************
[2025-11-29 16:48:38] 2025-11-30 00:47:43,620 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 16:48:38] 2025-11-30 00:47:43,620 | INFO     | ***************************************
[2025-11-29 16:48:38] 2025-11-30 00:47:43,620 | INFO     | 
[2025-11-29 16:48:38] 2025-11-30 00:47:43,631 | INFO     | architecture information:
[2025-11-29 16:48:38] 2025-11-30 00:47:43,635 | INFO     | executing command: cat /etc/os-release
[2025-11-29 16:48:38] 2025-11-30 00:47:43,725 | INFO     | cat /etc/os-release:
[2025-11-29 16:48:38] NAME="CentOS Linux"
[2025-11-29 16:48:38] VERSION="7 (Core)"
[2025-11-29 16:48:38] ID="centos"
[2025-11-29 16:48:38] ID_LIKE="rhel fedora"
[2025-11-29 16:48:38] VERSION_ID="7"
[2025-11-29 16:48:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 16:48:38] ANSI_COLOR="0;31"
[2025-11-29 16:48:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 16:48:38] HOME_URL="https://www.centos.org/"
[2025-11-29 16:48:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 16:48:38] 
[2025-11-29 16:48:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 16:48:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 16:48:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 16:48:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 16:48:38] 
[2025-11-29 16:48:38] 2025-11-30 00:47:43,726 | INFO     | ***************************************
[2025-11-29 16:48:38] 2025-11-30 00:47:44,229 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-29 16:48:38] 2025-11-30 00:47:44,327 | INFO     | sufficient remaining disk space (2064519266304 B)
[2025-11-29 16:48:38] 2025-11-30 00:47:44,328 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 16:48:38] 2025-11-30 00:47:44,328 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 16:48:38] 2025-11-30 00:47:44,328 | INFO     | update_server=False
[2025-11-29 16:48:38] 2025-11-30 00:47:44,328 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 16:48:38] 2025-11-30 00:47:44,333 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 16:48:38] 2025-11-30 00:47:44,334 | INFO     | aborting loop
[2025-11-29 16:48:38] 2025-11-30 00:47:44,687 | INFO     | all payload control threads have been joined
[2025-11-29 16:48:38] 2025-11-30 00:47:45,064 | INFO     | all data control threads have been joined
[2025-11-29 16:48:38] 2025-11-30 00:47:45,137 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 16:48:38] 2025-11-30 00:47:45,334 | INFO     | [job] retrieve thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:45,340 | INFO     | [job] job monitor thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:45,509 | INFO     | [data] copytool_in thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:45,693 | INFO     | [payload] control thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:45,863 | INFO     | all job control threads have been joined
[2025-11-29 16:48:38] 2025-11-30 00:47:46,070 | INFO     | [data] control thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:46,191 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:46,223 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:46,232 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 16:48:38] 2025-11-30 00:47:46,266 | INFO     | [payload] validate_post thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:46,432 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:46,432 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:46,433 | INFO     | [job] validate thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:46,864 | INFO     | [payload] failed_post thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:46,870 | INFO     | [job] control thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:46,921 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 16:48:38] 2025-11-30 00:47:47,152 | INFO     | [data] copytool_out thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:47,239 | INFO     | [job] queue monitor thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:47:50,931 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 16:48:38] 2025-11-30 00:48:15,473 | INFO     | PID=613307 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-29 16:48:38] 2025-11-30 00:48:15,474 | INFO     | .. there are 42 such processes running
[2025-11-29 16:48:38] 2025-11-30 00:48:15,474 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 16:48:38] 2025-11-30 00:48:15,474 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 16:48:38] 2025-11-30 00:48:15,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 16:48:38] 2025-11-30 00:48:30,927 | INFO     | [monitor] cgroup control has ended
[2025-11-29 16:48:38] 2025-11-30 00:48:31,478 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140300837513024)>', '<ExcThread(monitor, started 140299955312384)>']
[2025-11-29 16:48:38] 2025-11-30 00:48:31,573 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 16:48:38] 2025-11-30 00:48:31,574 | INFO     | [monitor] control thread has ended
[2025-11-29 16:48:38] 2025-11-30 00:48:36,503 | INFO     | all workflow threads have been joined
[2025-11-29 16:48:38] 2025-11-30 00:48:36,505 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 16:48:38] 2025-11-30 00:48:36,505 | INFO     | traces error code: 0
[2025-11-29 16:48:38] 2025-11-30 00:48:36,506 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 16:48:38] 2025-11-30 00:48:37,065 [wrapper] ==== pilot stdout END ====
[2025-11-29 16:48:38] 2025-11-30 00:48:37,124 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 16:48:38] 2025-11-30 00:48:37,154 [wrapper] pilotpid: 613307
[2025-11-29 16:48:38] 2025-11-30 00:48:37,220 [wrapper] Pilot exit status: 0
[2025-11-29 16:48:38] 2025-11-30 00:48:37,434 [wrapper] pandaids: 6897914527
[2025-11-29 16:48:38] 2025-11-30 00:48:37,667 [wrapper] cleanup supervisor_pilot  613313 613308
[2025-11-29 16:48:38] 2025-11-30 00:48:37,672 [wrapper] Test setup, not cleaning
[2025-11-29 16:48:38] 2025-11-30 00:48:37,675 [wrapper] apfmon messages muted
[2025-11-29 16:48:38] 2025-11-30 00:48:37,678 [wrapper] ==== wrapper stdout END ====
[2025-11-29 16:48:38] 2025-11-30 00:48:37,682 [wrapper] ==== wrapper stderr END ====
[2025-11-29 16:48:38]  *** Error codes and diagnostics ***
[2025-11-29 16:48:38]     "exeErrorCode": 65,
[2025-11-29 16:48:38]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-29 16:48:38]     "pilotErrorCode": 1305,
[2025-11-29 16:48:38]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-29 16:48:38]  *** Listing of results directory ***
[2025-11-29 16:48:38] total 371644
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc    576529 Nov 28 14:41 pilot3.tar.gz
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc      5112 Nov 28 14:43 queuedata.json
[2025-11-29 16:48:38] -rwx------. 1 boinc boinc     36292 Nov 28 14:43 runpilot2-wrapper.sh
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc       100 Nov 29 16:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 16:48:38] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 16:35 run_atlas
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc       105 Nov 29 16:35 job.xml
[2025-11-29 16:48:38] -rw-r--r--. 2 boinc boinc 376265671 Nov 29 16:35 EVNT.47528880._000051.pool.root.1
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc      6596 Nov 29 16:35 init_data.xml
[2025-11-29 16:48:38] -rw-r--r--. 2 boinc boinc     15847 Nov 29 16:35 start_atlas.sh
[2025-11-29 16:48:38] drwxrwx--x. 2 boinc boinc      4096 Nov 29 16:35 shared
[2025-11-29 16:48:38] -rw-r--r--. 2 boinc boinc    590123 Nov 29 16:35 input.tar.gz
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc         0 Nov 29 16:35 boinc_lockfile
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc      2877 Nov 29 16:35 pandaJob.out
[2025-11-29 16:48:38] -rw-------. 1 boinc boinc    991844 Nov 29 16:36 agis_schedconf.cvmfs.json
[2025-11-29 16:48:38] -rw-------. 1 boinc boinc   1516240 Nov 29 16:36 agis_ddmendpoints.agis.ALL.json
[2025-11-29 16:48:38] drwx------. 5 boinc boinc      4096 Nov 29 16:36 pilot3
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc       525 Nov 29 16:43 boinc_task_state.xml
[2025-11-29 16:48:38] -rw-------. 1 boinc boinc      1001 Nov 29 16:44 memory_monitor_summary.json
[2025-11-29 16:48:38] -rw-------. 1 boinc boinc     54443 Nov 29 16:44 log.47538121._000501.job.log.tgz.1
[2025-11-29 16:48:38] -rw-------. 1 boinc boinc      9261 Nov 29 16:47 heartbeat.json
[2025-11-29 16:48:38] -rw-------. 1 boinc boinc        95 Nov 29 16:47 pilot_heartbeat.json
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc        23 Nov 29 16:48 wrapper_checkpoint.txt
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc      8192 Nov 29 16:48 boinc_mmap_file
[2025-11-29 16:48:38] -rw-------. 1 boinc boinc      4822 Nov 29 16:48 pilotlog.txt
[2025-11-29 16:48:38] -rw-------. 1 boinc boinc    138240 Nov 29 16:48 log.47538121._000501.job.log.1
[2025-11-29 16:48:38] -rw-------. 1 boinc boinc       186 Nov 29 16:48 output.list
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc       620 Nov 29 16:48 runtime_log
[2025-11-29 16:48:38] -rw-------. 1 boinc boinc    215040 Nov 29 16:48 result.tar.gz
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc      8636 Nov 29 16:48 runtime_log.err
[2025-11-29 16:48:38] -rw-------. 1 boinc boinc       645 Nov 29 16:48 kkLKDm8MMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7WLKDm7aKSlm.diag
[2025-11-29 16:48:38] -rw-r--r--. 1 boinc boinc     22684 Nov 29 16:48 stderr.txt
[2025-11-29 16:48:38] No HITS result produced
[2025-11-29 16:48:38]  *** Contents of shared directory: ***
[2025-11-29 16:48:38] total 368256
[2025-11-29 16:48:38] -rw-r--r--. 2 boinc boinc 376265671 Nov 29 16:35 ATLAS.root_0
[2025-11-29 16:48:38] -rw-r--r--. 2 boinc boinc     15847 Nov 29 16:35 start_atlas.sh
[2025-11-29 16:48:38] -rw-r--r--. 2 boinc boinc    590123 Nov 29 16:35 input.tar.gz
[2025-11-29 16:48:38] -rw-------. 1 boinc boinc    215040 Nov 29 16:48 result.tar.gz
16:48:40 (609157): run_atlas exited; CPU time 128.725140
16:48:40 (609157): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN