Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:57:07 (651026): wrapper (7.7.26015): starting
18:57:07 (651026): wrapper: running run_atlas (--nthreads 12)
[2025-11-30 18:57:07] Arguments: --nthreads 12
[2025-11-30 18:57:07] Threads: 12
[2025-11-30 18:57:07] Checking for CVMFS
[2025-11-30 18:57:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 18:57:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 18:57:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 18:57:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 18:57:07] 2.13.3.0 9777 13146 98168 153489 0 81 3593831 4097025 1044 130560 0 9911072 99.972 711119 15281 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-11-30 18:57:07] CVMFS is ok
[2025-11-30 18:57:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 18:57:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 18:57:07] Further information can be found at the LHC@home message board.
[2025-11-30 18:57:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 18:57:07] Checking for apptainer binary...
[2025-11-30 18:57:07] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-11-30 18:57:07] apptainer is not installed, using version from CVMFS
[2025-11-30 18:57:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 18:57:08] pckelar6.cern.ch
[2025-11-30 18:57:08] apptainer works
[2025-11-30 18:57:08] Set ATHENA_PROC_NUMBER=12
[2025-11-30 18:57:08] Set ATHENA_CORE_NUMBER=12
[2025-11-30 18:57:08] Starting ATLAS job with PandaID=6897951978
[2025-11-30 18:57:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 05:19:33]  *** The last 200 lines of the pilot log: ***
[2025-12-01 05:19:33] 2025-12-01 04:18:58,110 | INFO     | monitor loop #2629: job 0:6897951978 is in state 'finished'
[2025-12-01 05:19:33] 2025-12-01 04:18:58,110 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 05:19:33] 2025-12-01 04:18:59,839 | INFO     | time since job start (37301s) is within the limit (172800.0s)
[2025-12-01 05:19:33] 2025-12-01 04:19:00,019 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 05:19:33] 2025-12-01 04:19:00,025 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2833.385
[2025-12-01 05:19:33] 2025-12-01 04:19:00,030 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6897951978/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 05:19:33] 2025-12-01 04:19:00,031 | INFO     | extracted standard info from prmon json
[2025-12-01 05:19:33] 2025-12-01 04:19:00,031 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 05:19:33] 2025-12-01 04:19:00,031 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 05:19:33] 2025-12-01 04:19:00,048 | INFO     | fitting pss+swap vs Time
[2025-12-01 05:19:33] 2025-12-01 04:19:00,049 | INFO     | sum of square deviations: 70729223320.527
[2025-12-01 05:19:33] 2025-12-01 04:19:00,061 | INFO     | sum of deviations: 1158865336340.4673
[2025-12-01 05:19:33] 2025-12-01 04:19:00,061 | INFO     | mean x: 1764544079.9721768
[2025-12-01 05:19:33] 2025-12-01 04:19:00,061 | INFO     | mean y: 4157080.792144026
[2025-12-01 05:19:33] 2025-12-01 04:19:00,062 | INFO     | intersect: -28907074694.759903
[2025-12-01 05:19:33] 2025-12-01 04:19:00,063 | INFO     | chi2: 6.363008604499777
[2025-12-01 05:19:33] 2025-12-01 04:19:00,064 | INFO     | sum of square deviations: 69007167543.26282
[2025-12-01 05:19:33] 2025-12-01 04:19:00,075 | INFO     | sum of deviations: 1434607106439.9563
[2025-12-01 05:19:33] 2025-12-01 04:19:00,075 | INFO     | mean x: 1764543927.480198
[2025-12-01 05:19:33] 2025-12-01 04:19:00,076 | INFO     | mean y: 4181482.704620462
[2025-12-01 05:19:33] 2025-12-01 04:19:00,076 | INFO     | intersect: -36679359490.072296
[2025-12-01 05:19:33] 2025-12-01 04:19:00,077 | INFO     | chi2: 3.5128613644084776
[2025-12-01 05:19:33] 2025-12-01 04:19:00,077 | INFO     | current chi2=3.5128613644084776 (change=44.792446737785944 %)
[2025-12-01 05:19:33] 2025-12-01 04:19:00,078 | INFO     | sum of square deviations: 67313298340.918846
[2025-12-01 05:19:33] 2025-12-01 04:19:00,089 | INFO     | sum of deviations: 1566879787857.1638
[2025-12-01 05:19:33] 2025-12-01 04:19:00,090 | INFO     | mean x: 1764543774.9883528
[2025-12-01 05:19:33] 2025-12-01 04:19:00,090 | INFO     | mean y: 4193378.023294509
[2025-12-01 05:19:33] 2025-12-01 04:19:00,090 | INFO     | intersect: -41069829793.67631
[2025-12-01 05:19:33] 2025-12-01 04:19:00,091 | INFO     | chi2: 2.683941995011042
[2025-12-01 05:19:33] 2025-12-01 04:19:00,091 | INFO     | current chi2=2.683941995011042 (change=23.596700336536493 %)
[2025-12-01 05:19:33] 2025-12-01 04:19:00,091 | INFO     | right removable region: 600
[2025-12-01 05:19:33] 2025-12-01 04:19:00,092 | INFO     | sum of square deviations: 69006842231.22108
[2025-12-01 05:19:33] 2025-12-01 04:19:00,104 | INFO     | sum of deviations: 899159141249.8854
[2025-12-01 05:19:33] 2025-12-01 04:19:00,104 | INFO     | mean x: 1764544232.4785478
[2025-12-01 05:19:33] 2025-12-01 04:19:00,104 | INFO     | mean y: 4180035.9141914193
[2025-12-01 05:19:33] 2025-12-01 04:19:00,104 | INFO     | intersect: -22987830980.27767
[2025-12-01 05:19:33] 2025-12-01 04:19:00,105 | INFO     | chi2: 3.8989385744425995
[2025-12-01 05:19:33] 2025-12-01 04:19:00,105 | INFO     | current chi2=3.8989385744425995 (change=38.72492060304056 %)
[2025-12-01 05:19:33] 2025-12-01 04:19:00,106 | INFO     | sum of square deviations: 67312795828.71889
[2025-12-01 05:19:33] 2025-12-01 04:19:00,118 | INFO     | sum of deviations: 834477017297.8083
[2025-12-01 05:19:33] 2025-12-01 04:19:00,118 | INFO     | mean x: 1764544384.9783695
[2025-12-01 05:19:33] 2025-12-01 04:19:00,118 | INFO     | mean y: 4185855.600665557
[2025-12-01 05:19:33] 2025-12-01 04:19:00,118 | INFO     | intersect: -21870878419.149273
[2025-12-01 05:19:33] 2025-12-01 04:19:00,119 | INFO     | chi2: 3.841381059365101
[2025-12-01 05:19:33] 2025-12-01 04:19:00,120 | INFO     | current chi2=3.841381059365101 (change=1.4762354927770838 %)
[2025-12-01 05:19:33] 2025-12-01 04:19:00,120 | INFO     | left removable region: 20
[2025-12-01 05:19:33] 2025-12-01 04:19:00,121 | INFO     | sum of square deviations: 60500728970.99312
[2025-12-01 05:19:33] 2025-12-01 04:19:00,131 | INFO     | sum of deviations: 1173031552619.4612
[2025-12-01 05:19:33] 2025-12-01 04:19:00,131 | INFO     | mean x: 1764544354.4965518
[2025-12-01 05:19:33] 2025-12-01 04:19:00,132 | INFO     | mean y: 4230964.481034483
[2025-12-01 05:19:33] 2025-12-01 04:19:00,132 | INFO     | intersect: -34208021334.38607
[2025-12-01 05:19:33] 2025-12-01 04:19:00,133 | INFO     | chi2: 0.09904083017008496
[2025-12-01 05:19:33] 2025-12-01 04:19:00,133 | INFO     | current memory leak: 19.39 B/s (using 580 data points, chi2=0.10)
[2025-12-01 05:19:33] 2025-12-01 04:19:00,134 | INFO     | could have reported an average CPU frequency of 2802 MHz (24 samples)
[2025-12-01 05:19:33] 2025-12-01 04:19:00,134 | INFO     | ..............................
[2025-12-01 05:19:33] 2025-12-01 04:19:00,134 | INFO     | . Timing measurements:
[2025-12-01 05:19:33] 2025-12-01 04:19:00,134 | INFO     | . get job = 0 s
[2025-12-01 05:19:33] 2025-12-01 04:19:00,135 | INFO     | . initial setup = 1 s
[2025-12-01 05:19:33] 2025-12-01 04:19:00,135 | INFO     | . payload setup = 13 s
[2025-12-01 05:19:33] 2025-12-01 04:19:00,135 | INFO     | . stage-in = 0 s
[2025-12-01 05:19:33] 2025-12-01 04:19:00,135 | INFO     | . payload execution = 37255 s
[2025-12-01 05:19:33] 2025-12-01 04:19:00,135 | INFO     | . stage-out = 2 s
[2025-12-01 05:19:33] 2025-12-01 04:19:00,135 | INFO     | . log creation = 0 s
[2025-12-01 05:19:33] 2025-12-01 04:19:00,135 | INFO     | ..............................
[2025-12-01 05:19:33] 2025-12-01 04:19:00,291 | INFO     | 
[2025-12-01 05:19:33] 2025-12-01 04:19:00,291 | INFO     | job summary report
[2025-12-01 05:19:33] 2025-12-01 04:19:00,291 | INFO     | --------------------------------------------------
[2025-12-01 05:19:33] 2025-12-01 04:19:00,291 | INFO     | PanDA job id: 6897951978
[2025-12-01 05:19:33] 2025-12-01 04:19:00,291 | INFO     | task id: 47531111
[2025-12-01 05:19:33] 2025-12-01 04:19:00,292 | INFO     | errors: (none)
[2025-12-01 05:19:33] 2025-12-01 04:19:00,292 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 05:19:33] 2025-12-01 04:19:00,292 | INFO     | pilot state: finished 
[2025-12-01 05:19:33] 2025-12-01 04:19:00,292 | INFO     | transexitcode: 0
[2025-12-01 05:19:33] 2025-12-01 04:19:00,292 | INFO     | exeerrorcode: 0
[2025-12-01 05:19:33] 2025-12-01 04:19:00,292 | INFO     | exeerrordiag: 
[2025-12-01 05:19:33] 2025-12-01 04:19:00,293 | INFO     | exitcode: 0
[2025-12-01 05:19:33] 2025-12-01 04:19:00,293 | INFO     | exitmsg: OK
[2025-12-01 05:19:33] 2025-12-01 04:19:00,293 | INFO     | cpuconsumptiontime: 429545 s
[2025-12-01 05:19:33] 2025-12-01 04:19:00,293 | INFO     | nevents: 1000
[2025-12-01 05:19:33] 2025-12-01 04:19:00,293 | INFO     | neventsw: 0
[2025-12-01 05:19:33] 2025-12-01 04:19:00,293 | INFO     | pid: 663055
[2025-12-01 05:19:33] 2025-12-01 04:19:00,293 | INFO     | pgrp: 663055
[2025-12-01 05:19:33] 2025-12-01 04:19:00,294 | INFO     | corecount: 12
[2025-12-01 05:19:33] 2025-12-01 04:19:00,294 | INFO     | event service: False
[2025-12-01 05:19:33] 2025-12-01 04:19:00,294 | INFO     | sizes: {0: 2284217, 1: 2284472, 2: 2284472, 6: 2284762, 12: 2284790, 37273: 2344935, 37276: 2353929, 37278: 2353985, 37285: 2354231}
[2025-12-01 05:19:33] 2025-12-01 04:19:00,294 | INFO     | --------------------------------------------------
[2025-12-01 05:19:33] 2025-12-01 04:19:00,294 | INFO     | 
[2025-12-01 05:19:33] 2025-12-01 04:19:00,295 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-12-01 05:19:33] 2025-12-01 04:19:00,315 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,315 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,315 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,316 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,316 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,316 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,316 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,316 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,316 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,317 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,317 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,317 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,317 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,317 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,317 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,318 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,318 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,318 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 05:19:33] 2025-12-01 04:19:00,318 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,318 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 05:19:33] 2025-12-01 04:19:00,319 | INFO     | job 6897951978 has completed (purged errors)
[2025-12-01 05:19:33] 2025-12-01 04:19:00,319 | INFO     | overall cleanup function is called
[2025-12-01 05:19:33] 2025-12-01 04:19:01,340 | INFO     | --- collectZombieJob: --- 10, [663055]
[2025-12-01 05:19:33] 2025-12-01 04:19:01,340 | INFO     | zombie collector waiting for pid 663055
[2025-12-01 05:19:33] 2025-12-01 04:19:01,340 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 05:19:33] 2025-12-01 04:19:01,340 | INFO     | collected zombie processes
[2025-12-01 05:19:33] 2025-12-01 04:19:01,340 | INFO     | will attempt to kill all subprocesses of pid=663055
[2025-12-01 05:19:33] 2025-12-01 04:19:01,535 | INFO     | process IDs to be killed: [663055] (in reverse order)
[2025-12-01 05:19:33] 2025-12-01 04:19:01,600 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 05:19:33] 2025-12-01 04:19:01,600 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 05:19:33] 2025-12-01 04:19:01,608 | INFO     | did not find any defunct processes belonging to 663055
[2025-12-01 05:19:33] 2025-12-01 04:19:01,616 | INFO     | did not find any defunct processes belonging to 663055
[2025-12-01 05:19:33] 2025-12-01 04:19:01,618 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 05:19:33] 2025-12-01 04:19:01,618 | INFO     | ready for new job
[2025-12-01 05:19:33] 2025-12-01 04:19:01,618 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 05:19:33] 2025-12-01 04:19:01,621 | INFO     | ***************************************
[2025-12-01 05:19:33] 2025-12-01 04:19:01,621 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 05:19:33] 2025-12-01 04:19:01,622 | INFO     | ***************************************
[2025-12-01 05:19:33] 2025-12-01 04:19:01,622 | INFO     | 
[2025-12-01 05:19:33] 2025-12-01 04:19:01,623 | INFO     | architecture information:
[2025-12-01 05:19:33] 2025-12-01 04:19:01,624 | INFO     | executing command: cat /etc/os-release
[2025-12-01 05:19:33] 2025-12-01 04:19:01,639 | INFO     | cat /etc/os-release:
[2025-12-01 05:19:33] NAME="CentOS Linux"
[2025-12-01 05:19:33] VERSION="7 (Core)"
[2025-12-01 05:19:33] ID="centos"
[2025-12-01 05:19:33] ID_LIKE="rhel fedora"
[2025-12-01 05:19:33] VERSION_ID="7"
[2025-12-01 05:19:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 05:19:33] ANSI_COLOR="0;31"
[2025-12-01 05:19:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 05:19:33] HOME_URL="https://www.centos.org/"
[2025-12-01 05:19:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 05:19:33] 
[2025-12-01 05:19:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 05:19:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 05:19:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 05:19:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 05:19:33] 
[2025-12-01 05:19:33] 2025-12-01 04:19:01,640 | INFO     | ***************************************
[2025-12-01 05:19:33] 2025-12-01 04:19:02,142 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-12-01 05:19:33] 2025-12-01 04:19:02,161 | INFO     | sufficient remaining disk space (866285256704 B)
[2025-12-01 05:19:33] 2025-12-01 04:19:02,161 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 05:19:33] 2025-12-01 04:19:02,162 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 05:19:33] 2025-12-01 04:19:02,162 | INFO     | update_server=False
[2025-12-01 05:19:33] 2025-12-01 04:19:02,162 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 05:19:33] 2025-12-01 04:19:02,162 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 05:19:33] 2025-12-01 04:19:02,163 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 05:19:33] 2025-12-01 04:19:02,163 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 05:19:33] 2025-12-01 04:19:02,163 | INFO     | aborting loop
[2025-12-01 05:19:33] 2025-12-01 04:19:02,622 | INFO     | all data control threads have been joined
[2025-12-01 05:19:33] 2025-12-01 04:19:02,921 | INFO     | all job control threads have been joined
[2025-12-01 05:19:33] 2025-12-01 04:19:03,168 | INFO     | [job] retrieve thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:03,168 | INFO     | [job] queue monitor thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:03,169 | INFO     | [job] job monitor thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:03,280 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:03,313 | INFO     | [data] copytool_in thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:03,438 | INFO     | [job] validate thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:03,462 | INFO     | all payload control threads have been joined
[2025-12-01 05:19:33] 2025-12-01 04:19:03,626 | INFO     | [data] control thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:03,644 | INFO     | [payload] validate_post thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:03,786 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:03,926 | INFO     | [job] control thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:03,944 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:03,998 | INFO     | [payload] failed_post thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:04,041 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 05:19:33] 2025-12-01 04:19:04,086 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:04,169 | INFO     | [data] copytool_out thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:04,467 | INFO     | [payload] control thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:08,044 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 05:19:33] 2025-12-01 04:19:20,190 | INFO     | [monitor] cgroup control has ended
[2025-12-01 05:19:33] 2025-12-01 04:19:20,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140462533105472)>', '<ExcThread(monitor, started 140461989680896)>']
[2025-12-01 05:19:33] 2025-12-01 04:19:25,621 | INFO     | all workflow threads have been joined
[2025-12-01 05:19:33] 2025-12-01 04:19:25,621 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 05:19:33] 2025-12-01 04:19:25,621 | INFO     | traces error code: 0
[2025-12-01 05:19:33] 2025-12-01 04:19:25,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 05:19:33] 2025-12-01 04:19:33,167 | INFO     | PID=654862 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 05:19:33] 2025-12-01 04:19:33,167 | INFO     | .. there are 2 such processes running
[2025-12-01 05:19:33] 2025-12-01 04:19:33,168 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 05:19:33] 2025-12-01 04:19:33,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 05:19:33] 2025-12-01 04:19:33,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 05:19:33] 2025-12-01 04:19:33,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 05:19:33] 2025-12-01 04:19:33,169 | INFO     | [monitor] control thread has ended
[2025-12-01 05:19:33] 2025-12-01 04:19:33,287 [wrapper] ==== pilot stdout END ====
[2025-12-01 05:19:33] 2025-12-01 04:19:33,291 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 05:19:33] 2025-12-01 04:19:33,294 [wrapper] pilotpid: 654862
[2025-12-01 05:19:33] 2025-12-01 04:19:33,296 [wrapper] Pilot exit status: 0
[2025-12-01 05:19:33] 2025-12-01 04:19:33,306 [wrapper] pandaids: 6897951978
[2025-12-01 05:19:33] 2025-12-01 04:19:33,345 [wrapper] cleanup supervisor_pilot  881146 654863
[2025-12-01 05:19:33] 2025-12-01 04:19:33,348 [wrapper] Test setup, not cleaning
[2025-12-01 05:19:33] 2025-12-01 04:19:33,351 [wrapper] apfmon messages muted
[2025-12-01 05:19:33] 2025-12-01 04:19:33,353 [wrapper] ==== wrapper stdout END ====
[2025-12-01 05:19:33] 2025-12-01 04:19:33,356 [wrapper] ==== wrapper stderr END ====
[2025-12-01 05:19:33]  *** Error codes and diagnostics ***
[2025-12-01 05:19:33]     "exeErrorCode": 0,
[2025-12-01 05:19:33]     "exeErrorDiag": "",
[2025-12-01 05:19:33]     "pilotErrorCode": 0,
[2025-12-01 05:19:33]     "pilotErrorDiag": "",
[2025-12-01 05:19:33]  *** Listing of results directory ***
[2025-12-01 05:19:33] total 1063792
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-01 05:19:33] -rwx------. 1 boinc boinc     36292 Nov 28 23:43 runpilot2-wrapper.sh
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc      5112 Nov 28 23:43 queuedata.json
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc       100 Nov 30 18:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 05:19:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 18:57 run_atlas
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc       105 Nov 30 18:57 job.xml
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc      6293 Nov 30 18:57 init_data.xml
[2025-12-01 05:19:33] -rw-r--r--. 2 boinc boinc 377677940 Nov 30 18:57 EVNT.47531104._000040.pool.root.1
[2025-12-01 05:19:33] -rw-r--r--. 2 boinc boinc     15847 Nov 30 18:57 start_atlas.sh
[2025-12-01 05:19:33] drwxrwx--x. 2 boinc boinc        68 Nov 30 18:57 shared
[2025-12-01 05:19:33] -rw-r--r--. 2 boinc boinc    590118 Nov 30 18:57 input.tar.gz
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc         0 Nov 30 18:57 boinc_lockfile
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc      2876 Nov 30 18:57 pandaJob.out
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc    993063 Nov 30 18:57 agis_schedconf.cvmfs.json
[2025-12-01 05:19:33] drwx------. 5 boinc boinc      4096 Nov 30 18:57 pilot3
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc       533 Dec  1 05:04 boinc_task_state.xml
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc 692528703 Dec  1 05:18 HITS.47531111._000321.pool.root.1
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc      1036 Dec  1 05:18 memory_monitor_summary.json
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc   1516240 Dec  1 05:18 agis_ddmendpoints.agis.ALL.json
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc   2431792 Dec  1 05:18 log.47531111._000321.job.log.tgz.1
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc     27216 Dec  1 05:19 heartbeat.json
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc        29 Dec  1 05:19 wrapper_checkpoint.txt
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc      8192 Dec  1 05:19 boinc_mmap_file
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc        95 Dec  1 05:19 pilot_heartbeat.json
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc       821 Dec  1 05:19 pilotlog.txt
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc   5156319 Dec  1 05:19 log.47531111._000321.job.log.1
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc       353 Dec  1 05:19 output.list
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc       620 Dec  1 05:19 runtime_log
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc   7628800 Dec  1 05:19 result.tar.gz
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc      8842 Dec  1 05:19 runtime_log.err
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc       665 Dec  1 05:19 nPrNDmsMMj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmulOKDmxxL1an.diag
[2025-12-01 05:19:33] -rw-r--r--. 1 boinc boinc     21427 Dec  1 05:19 stderr.txt
[2025-12-01 05:19:33] HITS file was successfully produced:
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc 692528703 Dec  1 05:18 shared/HITS.pool.root.1
[2025-12-01 05:19:33]  *** Contents of shared directory: ***
[2025-12-01 05:19:33] total 1053176
[2025-12-01 05:19:33] -rw-r--r--. 2 boinc boinc 377677940 Nov 30 18:57 ATLAS.root_0
[2025-12-01 05:19:33] -rw-r--r--. 2 boinc boinc     15847 Nov 30 18:57 start_atlas.sh
[2025-12-01 05:19:33] -rw-r--r--. 2 boinc boinc    590118 Nov 30 18:57 input.tar.gz
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc 692528703 Dec  1 05:18 HITS.pool.root.1
[2025-12-01 05:19:33] -rw-------. 1 boinc boinc   7628800 Dec  1 05:19 result.tar.gz
05:19:35 (651026): run_atlas exited; CPU time 429603.488802
05:19:35 (651026): called boinc_finish(0)

</stderr_txt>
]]>

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