Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:17:19 (4176706): wrapper (7.7.26015): starting
15:17:19 (4176706): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 15:17:19] Arguments: --nthreads 12
[2025-11-29 15:17:19] Threads: 12
[2025-11-29 15:17:19] Checking for CVMFS
[2025-11-29 15:17:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 15:17:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 15:17:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 15:17:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 15:17:19] 2.11.5.0 2503828 33070 219396 153460 3 136 37582916 45568000 15710 130560 0 303319476 99.777 202104829 25354 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-29 15:17:19] CVMFS is ok
[2025-11-29 15:17:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 15:17:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 15:17:19] Further information can be found at the LHC@home message board.
[2025-11-29 15:17:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 15:17:19] Checking for apptainer binary...
[2025-11-29 15:17:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 15:17:19] Running /usr/bin/apptainer --version
[2025-11-29 15:17:20] apptainer version 1.4.1-1.el9
[2025-11-29 15:17:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 15:17:20] wns0095.triumf.lcg
[2025-11-29 15:17:20] apptainer works
[2025-11-29 15:17:20] Set ATHENA_PROC_NUMBER=12
[2025-11-29 15:17:20] Set ATHENA_CORE_NUMBER=12
[2025-11-29 15:17:20] Starting ATLAS job with PandaID=6897928876
[2025-11-29 15:17:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 15:25:01]  *** The last 200 lines of the pilot log: ***
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | could have reported an average CPU frequency of 2661 MHz (4 samples)
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | ..............................
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . Timing measurements:
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . get job = 0 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . initial setup = 3 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . payload setup = 32 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . stage-in = 0 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . payload execution = 155 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . stage-out = 1 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . log creation = 0 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | ..............................
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897928876/pilotlog.txt
[2025-11-29 15:25:01] 2025-11-29 23:24:02,676 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-29 15:25:01] - Log from pilotlog.txt -
[2025-11-29 15:25:01] 2025-11-29 23:24:02,574 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897928876/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 15:25:01] 2025-11-29 23:24:02,575 | INFO     | extracted standard info from prmon json
[2025-11-29 15:25:01] 2025-11-29 23:24:02,575 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 15:25:01] 2025-11-29 23:24:02,575 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 15:25:01] 2025-11-29 23:24:02,575 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 15:25:01] 2025-11-29 23:24:02,575 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 15:25:01] 2025-11-29 23:24:02,596 | WARNING  | wrong length of table data, x=[1764458361.0, 1764458422.0, 1764458483.0], y=[3465.0, 743361.0, 702304.0] (must be same and length>=4)
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | could have reported an average CPU frequency of 2661 MHz (4 samples)
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | ..............................
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . Timing measurements:
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . get job = 0 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . initial setup = 3 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . payload setup = 32 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . stage-in = 0 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . payload execution = 155 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . stage-out = 1 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . log creation = 0 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | ..............................
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897928876/pilotlog.txt
[2025-11-29 15:25:01] 2025-11-29 23:24:02,676 | WARNING  | 
[2025-11-29 15:25:01] [begin log extracts]
[2025-11-29 15:25:01] - Log from pilotlog.txt -
[2025-11-29 15:25:01] 2025-11-29 23:24:02,574 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897928876/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 15:25:01] 2025-11-29 23:24:02,575 | INFO     | extracted standard info from prmon json
[2025-11-29 15:25:01] 2025-11-29 23:24:02,575 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 15:25:01] 2025-11-29 23:24:02,575 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 15:25:01] 2025-11-29 23:24:02,575 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 15:25:01] 2025-11-29 23:24:02,575 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 15:25:01] 2025-11-29 23:24:02,596 | WARNING  | wrong length of table data, x=[1764458361.0, 1764458422.0, 1764458483.0], y=[3465.0, 743361.0, 702304.0] (must be same and length>=4)
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | could have reported an average CPU frequency of 2661 MHz (4 samples)
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | ..............................
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . Timing measurements:
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . get job = 0 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . initial setup = 3 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . payload setup = 32 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . stage-in = 0 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . payload execution = 155 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . stage-out = 1 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | . log creation = 0 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | ..............................
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 15:25:01] 2025-11-29 23:24:02,597 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897928876/pilotlog.txt
[2025-11-29 15:25:01] [end log extracts]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,676 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-29 15:25:01] 2025-11-29 23:24:02,691 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-29 15:25:01] 2025-11-29 23:24:02,790 | INFO     | 
[2025-11-29 15:25:01] 2025-11-29 23:24:02,790 | INFO     | job summary report
[2025-11-29 15:25:01] 2025-11-29 23:24:02,790 | INFO     | --------------------------------------------------
[2025-11-29 15:25:01] 2025-11-29 23:24:02,790 | INFO     | PanDA job id: 6897928876
[2025-11-29 15:25:01] 2025-11-29 23:24:02,790 | INFO     | task id: 47531111
[2025-11-29 15:25:01] 2025-11-29 23:24:02,790 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-29 15:21:34,564 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-29 15:25:01] 2025-11-29 23:24:02,790 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | pilot state: failed 
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | transexitcode: 65
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | exeerrorcode: 65
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | exitcode: 65
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | cpuconsumptiontime: 61 s
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | nevents: 0
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | neventsw: 0
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | pid: 4187920
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | pgrp: 4187920
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | corecount: 12
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | event service: False
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | sizes: {0: 2284447, 1: 2284475, 12: 2284475, 15: 2284765, 22: 2284793, 193: 2308729, 195: 2313019, 197: 2313047, 333: 2313213}
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | --------------------------------------------------
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | 
[2025-11-29 15:25:01] 2025-11-29 23:24:02,791 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-29 15:25:01] 2025-11-29 23:24:02,909 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,909 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,909 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,909 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,909 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,909 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,909 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,909 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,909 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | job 6897928876 has completed (purged errors)
[2025-11-29 15:25:01] 2025-11-29 23:24:02,910 | INFO     | overall cleanup function is called
[2025-11-29 15:25:01] 2025-11-29 23:24:03,363 | INFO     | PID=4180440 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 15:25:01] 2025-11-29 23:24:03,380 | INFO     | .. there are 35 such processes running
[2025-11-29 15:25:01] 2025-11-29 23:24:03,918 | INFO     | --- collectZombieJob: --- 10, [4187920]
[2025-11-29 15:25:01] 2025-11-29 23:24:03,918 | INFO     | zombie collector waiting for pid 4187920
[2025-11-29 15:25:01] 2025-11-29 23:24:03,918 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 15:25:01] 2025-11-29 23:24:03,918 | INFO     | collected zombie processes
[2025-11-29 15:25:01] 2025-11-29 23:24:03,918 | INFO     | will attempt to kill all subprocesses of pid=4187920
[2025-11-29 15:25:01] 2025-11-29 23:24:04,357 | INFO     | process IDs to be killed: [4187920] (in reverse order)
[2025-11-29 15:25:01] 2025-11-29 23:24:04,432 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 15:25:01] 2025-11-29 23:24:04,432 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 15:25:01] 2025-11-29 23:24:04,454 | INFO     | did not find any defunct processes belonging to 4187920
[2025-11-29 15:25:01] 2025-11-29 23:24:04,467 | INFO     | did not find any defunct processes belonging to 4187920
[2025-11-29 15:25:01] 2025-11-29 23:24:04,468 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 15:25:01] 2025-11-29 23:24:04,468 | INFO     | ready for new job
[2025-11-29 15:25:01] 2025-11-29 23:24:04,468 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 15:25:01] 2025-11-29 23:24:04,469 | INFO     | ***************************************
[2025-11-29 15:25:01] 2025-11-29 23:24:04,469 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 15:25:01] 2025-11-29 23:24:04,469 | INFO     | ***************************************
[2025-11-29 15:25:01] 2025-11-29 23:24:04,469 | INFO     | 
[2025-11-29 15:25:01] 2025-11-29 23:24:04,471 | INFO     | architecture information:
[2025-11-29 15:25:01] 2025-11-29 23:24:04,472 | INFO     | executing command: cat /etc/os-release
[2025-11-29 15:25:01] 2025-11-29 23:24:04,485 | INFO     | cat /etc/os-release:
[2025-11-29 15:25:01] NAME="CentOS Linux"
[2025-11-29 15:25:01] VERSION="7 (Core)"
[2025-11-29 15:25:01] ID="centos"
[2025-11-29 15:25:01] ID_LIKE="rhel fedora"
[2025-11-29 15:25:01] VERSION_ID="7"
[2025-11-29 15:25:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 15:25:01] ANSI_COLOR="0;31"
[2025-11-29 15:25:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 15:25:01] HOME_URL="https://www.centos.org/"
[2025-11-29 15:25:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 15:25:01] 
[2025-11-29 15:25:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 15:25:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 15:25:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 15:25:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 15:25:01] 
[2025-11-29 15:25:01] 2025-11-29 23:24:04,485 | INFO     | ***************************************
[2025-11-29 15:25:01] 2025-11-29 23:24:04,991 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-29 15:25:01] 2025-11-29 23:24:05,032 | INFO     | sufficient remaining disk space (2145421099008 B)
[2025-11-29 15:25:01] 2025-11-29 23:24:05,032 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 15:25:01] 2025-11-29 23:24:05,033 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 15:25:01] 2025-11-29 23:24:05,033 | INFO     | update_server=False
[2025-11-29 15:25:01] 2025-11-29 23:24:05,033 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 15:25:01] 2025-11-29 23:24:05,034 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 15:25:01] 2025-11-29 23:24:05,034 | INFO     | aborting loop
[2025-11-29 15:25:01] 2025-11-29 23:24:05,272 | INFO     | all data control threads have been joined
[2025-11-29 15:25:01] 2025-11-29 23:24:05,825 | INFO     | all payload control threads have been joined
[2025-11-29 15:25:01] 2025-11-29 23:24:06,039 | INFO     | [job] retrieve thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:06,040 | INFO     | [job] job monitor thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:06,125 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 15:25:01] 2025-11-29 23:24:06,278 | INFO     | [data] control thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:06,333 | INFO     | [payload] validate_post thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:06,338 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:06,389 | INFO     | [job] validate thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:06,502 | INFO     | all job control threads have been joined
[2025-11-29 15:25:01] 2025-11-29 23:24:06,531 | INFO     | [data] copytool_in thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:06,724 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:06,838 | INFO     | [payload] control thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:07,194 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:07,377 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:07,508 | INFO     | [job] control thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:07,517 | INFO     | [payload] failed_post thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:07,805 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 15:25:01] 2025-11-29 23:24:08,116 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 15:25:01] 2025-11-29 23:24:08,132 | INFO     | [data] copytool_out thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:08,811 | INFO     | [job] queue monitor thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:12,125 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 15:25:01] 2025-11-29 23:24:35,868 | INFO     | PID=4180440 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 15:25:01] 2025-11-29 23:24:35,868 | INFO     | .. there are 35 such processes running
[2025-11-29 15:25:01] 2025-11-29 23:24:35,868 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 15:25:01] 2025-11-29 23:24:35,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 15:25:01] 2025-11-29 23:24:35,868 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 15:25:01] 2025-11-29 23:24:53,955 | INFO     | [monitor] cgroup control has ended
[2025-11-29 15:25:01] 2025-11-29 23:24:55,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140043679430464)>', '<ExcThread(monitor, started 140043289085696)>']
[2025-11-29 15:25:01] 2025-11-29 23:24:56,005 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 15:25:01] 2025-11-29 23:24:56,005 | INFO     | [monitor] control thread has ended
[2025-11-29 15:25:01] 2025-11-29 23:25:00,724 | INFO     | all workflow threads have been joined
[2025-11-29 15:25:01] 2025-11-29 23:25:00,724 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 15:25:01] 2025-11-29 23:25:00,724 | INFO     | traces error code: 0
[2025-11-29 15:25:01] 2025-11-29 23:25:00,725 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 15:25:01] 2025-11-29 23:25:01,437 [wrapper] ==== pilot stdout END ====
[2025-11-29 15:25:01] 2025-11-29 23:25:01,438 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 15:25:01] 2025-11-29 23:25:01,440 [wrapper] pilotpid: 4180440
[2025-11-29 15:25:01] 2025-11-29 23:25:01,442 [wrapper] Pilot exit status: 0
[2025-11-29 15:25:01] 2025-11-29 23:25:01,451 [wrapper] pandaids: 6897928876
[2025-11-29 15:25:01] 2025-11-29 23:25:01,511 [wrapper] cleanup supervisor_pilot 4180447 4180441
[2025-11-29 15:25:01] 2025-11-29 23:25:01,514 [wrapper] Test setup, not cleaning
[2025-11-29 15:25:01] 2025-11-29 23:25:01,516 [wrapper] apfmon messages muted
[2025-11-29 15:25:01] 2025-11-29 23:25:01,517 [wrapper] ==== wrapper stdout END ====
[2025-11-29 15:25:01] 2025-11-29 23:25:01,519 [wrapper] ==== wrapper stderr END ====
[2025-11-29 15:25:01]  *** Error codes and diagnostics ***
[2025-11-29 15:25:01]     "exeErrorCode": 65,
[2025-11-29 15:25:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-29 15:25:01]     "pilotErrorCode": 1305,
[2025-11-29 15:25:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-29 15:25:01]  *** Listing of results directory ***
[2025-11-29 15:25:01] total 373068
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc    576529 Nov 28 14:41 pilot3.tar.gz
[2025-11-29 15:25:01] -rwx------. 1 boinc boinc     36292 Nov 28 14:43 runpilot2-wrapper.sh
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc      5112 Nov 28 14:43 queuedata.json
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc       100 Nov 29 15:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 15:25:01] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 15:17 run_atlas
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc       105 Nov 29 15:17 job.xml
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc      6597 Nov 29 15:17 init_data.xml
[2025-11-29 15:25:01] -rw-r--r--. 2 boinc boinc 377778723 Nov 29 15:17 EVNT.47531104._000023.pool.root.1
[2025-11-29 15:25:01] -rw-r--r--. 2 boinc boinc     15847 Nov 29 15:17 start_atlas.sh
[2025-11-29 15:25:01] drwxrwx--x. 2 boinc boinc      4096 Nov 29 15:17 shared
[2025-11-29 15:25:01] -rw-r--r--. 2 boinc boinc    590120 Nov 29 15:17 input.tar.gz
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc         0 Nov 29 15:17 boinc_lockfile
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc      2879 Nov 29 15:17 pandaJob.out
[2025-11-29 15:25:01] -rw-------. 1 boinc boinc    991826 Nov 29 15:17 agis_schedconf.cvmfs.json
[2025-11-29 15:25:01] -rw-------. 1 boinc boinc   1516240 Nov 29 15:17 agis_ddmendpoints.agis.ALL.json
[2025-11-29 15:25:01] drwx------. 5 boinc boinc      4096 Nov 29 15:17 pilot3
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc       524 Nov 29 15:21 boinc_task_state.xml
[2025-11-29 15:25:01] -rw-------. 1 boinc boinc      1000 Nov 29 15:21 memory_monitor_summary.json
[2025-11-29 15:25:01] -rw-------. 1 boinc boinc     51563 Nov 29 15:21 log.47531111._000156.job.log.tgz.1
[2025-11-29 15:25:01] -rw-------. 1 boinc boinc        95 Nov 29 15:23 pilot_heartbeat.json
[2025-11-29 15:25:01] -rw-------. 1 boinc boinc      9939 Nov 29 15:24 heartbeat.json
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc        23 Nov 29 15:24 wrapper_checkpoint.txt
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc      8192 Nov 29 15:24 boinc_mmap_file
[2025-11-29 15:25:01] -rw-------. 1 boinc boinc      4823 Nov 29 15:25 pilotlog.txt
[2025-11-29 15:25:01] -rw-------. 1 boinc boinc    112315 Nov 29 15:25 log.47531111._000156.job.log.1
[2025-11-29 15:25:01] -rw-------. 1 boinc boinc       186 Nov 29 15:25 output.list
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc       620 Nov 29 15:25 runtime_log
[2025-11-29 15:25:01] -rw-------. 1 boinc boinc    184320 Nov 29 15:25 result.tar.gz
[2025-11-29 15:25:01] -rw-------. 1 boinc boinc       647 Nov 29 15:25 zQdMDmeMMj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqkOKDmXDmWon.diag
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc      8636 Nov 29 15:25 runtime_log.err
[2025-11-29 15:25:01] -rw-r--r--. 1 boinc boinc     22600 Nov 29 15:25 stderr.txt
[2025-11-29 15:25:01] No HITS result produced
[2025-11-29 15:25:01]  *** Contents of shared directory: ***
[2025-11-29 15:25:01] total 369708
[2025-11-29 15:25:01] -rw-r--r--. 2 boinc boinc 377778723 Nov 29 15:17 ATLAS.root_0
[2025-11-29 15:25:01] -rw-r--r--. 2 boinc boinc     15847 Nov 29 15:17 start_atlas.sh
[2025-11-29 15:25:01] -rw-r--r--. 2 boinc boinc    590120 Nov 29 15:17 input.tar.gz
[2025-11-29 15:25:01] -rw-------. 1 boinc boinc    184320 Nov 29 15:25 result.tar.gz
15:25:03 (4176706): run_atlas exited; CPU time 66.407577
15:25:03 (4176706): called boinc_finish(0)

</stderr_txt>
]]>

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