Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:25:06 (5167): wrapper (7.7.26015): starting
15:25:06 (5167): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 15:25:06] Arguments: --nthreads 12
[2025-11-29 15:25:06] Threads: 12
[2025-11-29 15:25:06] Checking for CVMFS
[2025-11-29 15:25:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 15:25:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 15:25:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 15:25:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 15:25:07] 2.11.5.0 2503828 33078 219288 153461 3 136 37586646 45568000 15710 130560 0 303385716 99.777 202106146 25354 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-29 15:25:07] CVMFS is ok
[2025-11-29 15:25:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 15:25:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 15:25:07] Further information can be found at the LHC@home message board.
[2025-11-29 15:25:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 15:25:07] Checking for apptainer binary...
[2025-11-29 15:25:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 15:25:07] Running /usr/bin/apptainer --version
[2025-11-29 15:25:08] apptainer version 1.4.1-1.el9
[2025-11-29 15:25:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 15:25:09] wns0095.triumf.lcg
[2025-11-29 15:25:09] apptainer works
[2025-11-29 15:25:09] Set ATHENA_PROC_NUMBER=12
[2025-11-29 15:25:09] Set ATHENA_CORE_NUMBER=12
[2025-11-29 15:25:09] Starting ATLAS job with PandaID=6897951507
[2025-11-29 15:25:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 15:34:03]  *** The last 200 lines of the pilot log: ***
[2025-11-29 15:34:03] 2025-11-29 23:33:30,326 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | WARNING  | wrong length of table data, x=[1764458875.0, 1764458936.0, 1764458997.0, 1764459058.0], y=[1943.0, 519747.0, 389666.0, 810766.0] (must be same and length>=4)
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | could have reported an average CPU frequency of 2655 MHz (4 samples)
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | ..............................
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . Timing measurements:
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . get job = 0 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . initial setup = 3 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . payload setup = 42 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . stage-in = 0 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . payload execution = 213 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | . stage-out = 1 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | . log creation = 0 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | ..............................
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897951507/pilotlog.txt
[2025-11-29 15:34:03] 2025-11-29 23:33:30,339 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-29 15:34:03] - Log from pilotlog.txt -
[2025-11-29 15:34:03] 2025-11-29 23:33:30,325 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897951507/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 15:34:03] 2025-11-29 23:33:30,326 | INFO     | extracted standard info from prmon json
[2025-11-29 15:34:03] 2025-11-29 23:33:30,326 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 15:34:03] 2025-11-29 23:33:30,326 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 15:34:03] 2025-11-29 23:33:30,326 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 15:34:03] 2025-11-29 23:33:30,326 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | WARNING  | wrong length of table data, x=[1764458875.0, 1764458936.0, 1764458997.0, 1764459058.0], y=[1943.0, 519747.0, 389666.0, 810766.0] (must be same and length>=4)
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | could have reported an average CPU frequency of 2655 MHz (4 samples)
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | ..............................
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . Timing measurements:
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . get job = 0 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . initial setup = 3 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . payload setup = 42 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . stage-in = 0 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . payload execution = 213 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | . stage-out = 1 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | . log creation = 0 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | ..............................
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897951507/pilotlog.txt
[2025-11-29 15:34:03] 2025-11-29 23:33:30,339 | WARNING  | 
[2025-11-29 15:34:03] [begin log extracts]
[2025-11-29 15:34:03] - Log from pilotlog.txt -
[2025-11-29 15:34:03] 2025-11-29 23:33:30,325 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897951507/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 15:34:03] 2025-11-29 23:33:30,326 | INFO     | extracted standard info from prmon json
[2025-11-29 15:34:03] 2025-11-29 23:33:30,326 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 15:34:03] 2025-11-29 23:33:30,326 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 15:34:03] 2025-11-29 23:33:30,326 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 15:34:03] 2025-11-29 23:33:30,326 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | WARNING  | wrong length of table data, x=[1764458875.0, 1764458936.0, 1764458997.0, 1764459058.0], y=[1943.0, 519747.0, 389666.0, 810766.0] (must be same and length>=4)
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | could have reported an average CPU frequency of 2655 MHz (4 samples)
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | ..............................
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . Timing measurements:
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . get job = 0 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . initial setup = 3 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . payload setup = 42 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . stage-in = 0 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,327 | INFO     | . payload execution = 213 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | . stage-out = 1 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | . log creation = 0 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | ..............................
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 15:34:03] 2025-11-29 23:33:30,328 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897951507/pilotlog.txt
[2025-11-29 15:34:03] [end log extracts]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,340 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-29 15:34:03] 2025-11-29 23:33:30,340 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | 
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | job summary report
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | --------------------------------------------------
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | PanDA job id: 6897951507
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | task id: 47531111
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-29 15:31:05,366 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | pilot state: failed 
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | transexitcode: 65
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | exeerrorcode: 65
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | exitcode: 65
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | cpuconsumptiontime: 63 s
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | nevents: 0
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | neventsw: 0
[2025-11-29 15:34:03] 2025-11-29 23:33:30,395 | INFO     | pid: 16576
[2025-11-29 15:34:03] 2025-11-29 23:33:30,396 | INFO     | pgrp: 16576
[2025-11-29 15:34:03] 2025-11-29 23:33:30,396 | INFO     | corecount: 12
[2025-11-29 15:34:03] 2025-11-29 23:33:30,396 | INFO     | event service: False
[2025-11-29 15:34:03] 2025-11-29 23:33:30,396 | INFO     | sizes: {0: 2284276, 1: 2284475, 2: 2284475, 13: 2284503, 24: 2284559, 28: 2284849, 35: 2285005, 259: 2308787, 261: 2313077, 262: 2313133, 395: 2313327}
[2025-11-29 15:34:03] 2025-11-29 23:33:30,396 | INFO     | --------------------------------------------------
[2025-11-29 15:34:03] 2025-11-29 23:33:30,396 | INFO     | 
[2025-11-29 15:34:03] 2025-11-29 23:33:30,396 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-29 15:34:03] 2025-11-29 23:33:30,409 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,410 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 15:34:03] 2025-11-29 23:33:30,411 | INFO     | job 6897951507 has completed (purged errors)
[2025-11-29 15:34:03] 2025-11-29 23:33:30,411 | INFO     | overall cleanup function is called
[2025-11-29 15:34:03] 2025-11-29 23:33:31,420 | INFO     | --- collectZombieJob: --- 10, [16576]
[2025-11-29 15:34:03] 2025-11-29 23:33:31,420 | INFO     | zombie collector waiting for pid 16576
[2025-11-29 15:34:03] 2025-11-29 23:33:31,420 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 15:34:03] 2025-11-29 23:33:31,420 | INFO     | collected zombie processes
[2025-11-29 15:34:03] 2025-11-29 23:33:31,420 | INFO     | will attempt to kill all subprocesses of pid=16576
[2025-11-29 15:34:03] 2025-11-29 23:33:31,651 | INFO     | process IDs to be killed: [16576] (in reverse order)
[2025-11-29 15:34:03] 2025-11-29 23:33:31,725 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 15:34:03] 2025-11-29 23:33:31,725 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 15:34:03] 2025-11-29 23:33:31,734 | INFO     | did not find any defunct processes belonging to 16576
[2025-11-29 15:34:03] 2025-11-29 23:33:31,742 | INFO     | did not find any defunct processes belonging to 16576
[2025-11-29 15:34:03] 2025-11-29 23:33:31,743 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 15:34:03] 2025-11-29 23:33:31,743 | INFO     | ready for new job
[2025-11-29 15:34:03] 2025-11-29 23:33:31,743 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 15:34:03] 2025-11-29 23:33:31,744 | INFO     | ***************************************
[2025-11-29 15:34:03] 2025-11-29 23:33:31,744 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 15:34:03] 2025-11-29 23:33:31,744 | INFO     | ***************************************
[2025-11-29 15:34:03] 2025-11-29 23:33:31,744 | INFO     | 
[2025-11-29 15:34:03] 2025-11-29 23:33:31,746 | INFO     | architecture information:
[2025-11-29 15:34:03] 2025-11-29 23:33:31,746 | INFO     | executing command: cat /etc/os-release
[2025-11-29 15:34:03] 2025-11-29 23:33:31,757 | INFO     | cat /etc/os-release:
[2025-11-29 15:34:03] NAME="CentOS Linux"
[2025-11-29 15:34:03] VERSION="7 (Core)"
[2025-11-29 15:34:03] ID="centos"
[2025-11-29 15:34:03] ID_LIKE="rhel fedora"
[2025-11-29 15:34:03] VERSION_ID="7"
[2025-11-29 15:34:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 15:34:03] ANSI_COLOR="0;31"
[2025-11-29 15:34:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 15:34:03] HOME_URL="https://www.centos.org/"
[2025-11-29 15:34:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 15:34:03] 
[2025-11-29 15:34:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 15:34:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 15:34:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 15:34:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 15:34:03] 
[2025-11-29 15:34:03] 2025-11-29 23:33:31,758 | INFO     | ***************************************
[2025-11-29 15:34:03] 2025-11-29 23:33:32,267 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-29 15:34:03] 2025-11-29 23:33:32,309 | INFO     | sufficient remaining disk space (2145386496000 B)
[2025-11-29 15:34:03] 2025-11-29 23:33:32,309 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 15:34:03] 2025-11-29 23:33:32,310 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 15:34:03] 2025-11-29 23:33:32,310 | INFO     | update_server=False
[2025-11-29 15:34:03] 2025-11-29 23:33:32,310 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 15:34:03] 2025-11-29 23:33:32,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 15:34:03] 2025-11-29 23:33:32,320 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 15:34:03] 2025-11-29 23:33:32,369 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 15:34:03] 2025-11-29 23:33:32,369 | INFO     | aborting loop
[2025-11-29 15:34:03] 2025-11-29 23:33:32,602 | INFO     | all payload control threads have been joined
[2025-11-29 15:34:03] 2025-11-29 23:33:33,052 | INFO     | all data control threads have been joined
[2025-11-29 15:34:03] 2025-11-29 23:33:33,316 | INFO     | [job] retrieve thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:33,326 | INFO     | [job] queue monitor thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:33,384 | INFO     | [job] job monitor thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:33,385 | INFO     | [data] copytool_in thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:33,385 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:33,549 | INFO     | [payload] failed_post thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:33,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:33,608 | INFO     | [payload] control thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:33,848 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:33,998 | INFO     | all job control threads have been joined
[2025-11-29 15:34:03] 2025-11-29 23:33:34,067 | INFO     | [data] control thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:34,207 | INFO     | [payload] validate_post thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:34,318 | INFO     | [data] copytool_out thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:34,434 | INFO     | [job] validate thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:34,473 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:34,574 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 15:34:03] 2025-11-29 23:33:35,004 | INFO     | [job] control thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:38,593 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 15:34:03] 2025-11-29 23:33:54,082 | INFO     | [monitor] cgroup control has ended
[2025-11-29 15:34:03] 2025-11-29 23:33:54,493 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140275403790144)>', '<ExcThread(monitor, started 140274999207680)>']
[2025-11-29 15:34:03] 2025-11-29 23:33:59,519 | INFO     | all workflow threads have been joined
[2025-11-29 15:34:03] 2025-11-29 23:33:59,519 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 15:34:03] 2025-11-29 23:33:59,519 | INFO     | traces error code: 0
[2025-11-29 15:34:03] 2025-11-29 23:33:59,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 15:34:03] 2025-11-29 23:34:02,731 | INFO     | PID=8926 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-29 15:34:03] 2025-11-29 23:34:02,731 | INFO     | .. there are 34 such processes running
[2025-11-29 15:34:03] 2025-11-29 23:34:02,731 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 15:34:03] 2025-11-29 23:34:02,731 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 15:34:03] 2025-11-29 23:34:02,732 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 15:34:03] 2025-11-29 23:34:02,732 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 15:34:03] 2025-11-29 23:34:02,732 | INFO     | [monitor] control thread has ended
[2025-11-29 15:34:03] 2025-11-29 23:34:03,021 [wrapper] ==== pilot stdout END ====
[2025-11-29 15:34:03] 2025-11-29 23:34:03,053 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 15:34:03] 2025-11-29 23:34:03,067 [wrapper] pilotpid: 8926
[2025-11-29 15:34:03] 2025-11-29 23:34:03,130 [wrapper] Pilot exit status: 0
[2025-11-29 15:34:03] 2025-11-29 23:34:03,265 [wrapper] pandaids: 6897951507
[2025-11-29 15:34:03] 2025-11-29 23:34:03,333 [wrapper] cleanup supervisor_pilot    8932 8927
[2025-11-29 15:34:03] 2025-11-29 23:34:03,335 [wrapper] Test setup, not cleaning
[2025-11-29 15:34:03] 2025-11-29 23:34:03,337 [wrapper] apfmon messages muted
[2025-11-29 15:34:03] 2025-11-29 23:34:03,339 [wrapper] ==== wrapper stdout END ====
[2025-11-29 15:34:03] 2025-11-29 23:34:03,340 [wrapper] ==== wrapper stderr END ====
[2025-11-29 15:34:03]  *** Error codes and diagnostics ***
[2025-11-29 15:34:03]     "exeErrorCode": 65,
[2025-11-29 15:34:03]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-29 15:34:03]     "pilotErrorCode": 1305,
[2025-11-29 15:34:03]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-29 15:34:03]  *** Listing of results directory ***
[2025-11-29 15:34:03] total 373400
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc    576529 Nov 28 14:41 pilot3.tar.gz
[2025-11-29 15:34:03] -rwx------. 1 boinc boinc     36292 Nov 28 14:43 runpilot2-wrapper.sh
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc      5112 Nov 28 14:43 queuedata.json
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc       100 Nov 29 15:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 15:34:03] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 15:25 run_atlas
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc       105 Nov 29 15:25 job.xml
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc      6597 Nov 29 15:25 init_data.xml
[2025-11-29 15:34:03] -rw-r--r--. 2 boinc boinc 378104825 Nov 29 15:25 EVNT.47531104._000028.pool.root.1
[2025-11-29 15:34:03] -rw-r--r--. 2 boinc boinc     15847 Nov 29 15:25 start_atlas.sh
[2025-11-29 15:34:03] drwxrwx--x. 2 boinc boinc      4096 Nov 29 15:25 shared
[2025-11-29 15:34:03] -rw-r--r--. 2 boinc boinc    590122 Nov 29 15:25 input.tar.gz
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc         0 Nov 29 15:25 boinc_lockfile
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc      2879 Nov 29 15:25 pandaJob.out
[2025-11-29 15:34:03] -rw-------. 1 boinc boinc    991826 Nov 29 15:25 agis_schedconf.cvmfs.json
[2025-11-29 15:34:03] -rw-------. 1 boinc boinc   1516240 Nov 29 15:25 agis_ddmendpoints.agis.ALL.json
[2025-11-29 15:34:03] drwx------. 5 boinc boinc      4096 Nov 29 15:25 pilot3
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc       524 Nov 29 15:31 boinc_task_state.xml
[2025-11-29 15:34:03] -rw-------. 1 boinc boinc       998 Nov 29 15:31 memory_monitor_summary.json
[2025-11-29 15:34:03] -rw-------. 1 boinc boinc     52702 Nov 29 15:31 log.47531111._000209.job.log.tgz.1
[2025-11-29 15:34:03] -rw-------. 1 boinc boinc      9925 Nov 29 15:33 heartbeat.json
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc      8192 Nov 29 15:33 boinc_mmap_file
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc        23 Nov 29 15:33 wrapper_checkpoint.txt
[2025-11-29 15:34:03] -rw-------. 1 boinc boinc        95 Nov 29 15:34 pilot_heartbeat.json
[2025-11-29 15:34:03] -rw-------. 1 boinc boinc       820 Nov 29 15:34 pilotlog.txt
[2025-11-29 15:34:03] -rw-------. 1 boinc boinc    121232 Nov 29 15:34 log.47531111._000209.job.log.1
[2025-11-29 15:34:03] -rw-------. 1 boinc boinc       186 Nov 29 15:34 output.list
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc       620 Nov 29 15:34 runtime_log
[2025-11-29 15:34:03] -rw-------. 1 boinc boinc    194560 Nov 29 15:34 result.tar.gz
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc      8636 Nov 29 15:34 runtime_log.err
[2025-11-29 15:34:03] -rw-------. 1 boinc boinc       646 Nov 29 15:34 MTKNDmlMMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6SLKDmQMZHqm.diag
[2025-11-29 15:34:03] -rw-r--r--. 1 boinc boinc     22642 Nov 29 15:34 stderr.txt
[2025-11-29 15:34:03] No HITS result produced
[2025-11-29 15:34:03]  *** Contents of shared directory: ***
[2025-11-29 15:34:03] total 370036
[2025-11-29 15:34:03] -rw-r--r--. 2 boinc boinc 378104825 Nov 29 15:25 ATLAS.root_0
[2025-11-29 15:34:03] -rw-r--r--. 2 boinc boinc     15847 Nov 29 15:25 start_atlas.sh
[2025-11-29 15:34:03] -rw-r--r--. 2 boinc boinc    590122 Nov 29 15:25 input.tar.gz
[2025-11-29 15:34:03] -rw-------. 1 boinc boinc    194560 Nov 29 15:34 result.tar.gz
15:34:05 (5167): run_atlas exited; CPU time 70.152985
15:34:05 (5167): called boinc_finish(0)

</stderr_txt>
]]>

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