Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:55:24 (2913341): wrapper (7.7.26015): starting
22:55:24 (2913341): wrapper: running run_atlas (--nthreads 3)
[2025-12-02 22:55:24] Arguments: --nthreads 3
[2025-12-02 22:55:24] Threads: 3
[2025-12-02 22:55:24] Checking for CVMFS
[2025-12-02 22:55:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 22:55:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 22:55:24] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 22:55:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 22:55:24] 2.9.2.0 237354 20270 100192 153569 1 81 22540544 36864000 0 130560 1 7464474 99.956 893047 838 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-02 22:55:24] CVMFS is ok
[2025-12-02 22:55:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 22:55:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 22:55:24] Further information can be found at the LHC@home message board.
[2025-12-02 22:55:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 22:55:24] Checking for apptainer binary...
[2025-12-02 22:55:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 22:55:24] Running /usr/bin/apptainer --version
[2025-12-02 22:55:24] apptainer version 1.4.1-1.1
[2025-12-02 22:55:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 22:55:24] cosA127b
[2025-12-02 22:55:24] apptainer works
[2025-12-02 22:55:24] Set ATHENA_PROC_NUMBER=3
[2025-12-02 22:55:24] Set ATHENA_CORE_NUMBER=3
[2025-12-02 22:55:24] Starting ATLAS job with PandaID=6897928787
[2025-12-02 22:55:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 05:40:09]  *** The last 200 lines of the pilot log: ***
[2025-12-03 05:40:09] 2025-12-03 04:39:38,227 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6897928787/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 05:40:09] 2025-12-03 04:39:38,227 | INFO     | extracted standard info from prmon json
[2025-12-03 05:40:09] 2025-12-03 04:39:38,227 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 05:40:09] 2025-12-03 04:39:38,227 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 05:40:09] 2025-12-03 04:39:38,230 | INFO     | fitting pss+swap vs Time
[2025-12-03 05:40:09] 2025-12-03 04:39:38,230 | INFO     | sum of square deviations: 19549015839.5
[2025-12-03 05:40:09] 2025-12-03 04:39:38,231 | INFO     | sum of deviations: 173749795757.5
[2025-12-03 05:40:09] 2025-12-03 04:39:38,231 | INFO     | mean x: 1764724659.5
[2025-12-03 05:40:09] 2025-12-03 04:39:38,232 | INFO     | mean y: 2575604.4798994977
[2025-12-03 05:40:09] 2025-12-03 04:39:38,232 | INFO     | intersect: -15682129532.277056
[2025-12-03 05:40:09] 2025-12-03 04:39:38,232 | INFO     | chi2: 4.669310845489569
[2025-12-03 05:40:09] 2025-12-03 04:39:38,232 | INFO     | sum of square deviations: 18821458012.0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,233 | INFO     | sum of deviations: 246126794584.99994
[2025-12-03 05:40:09] 2025-12-03 04:39:38,233 | INFO     | mean x: 1764724507.0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,233 | INFO     | mean y: 2590691.6972010178
[2025-12-03 05:40:09] 2025-12-03 04:39:38,233 | INFO     | intersect: -23074579310.572456
[2025-12-03 05:40:09] 2025-12-03 04:39:38,233 | INFO     | chi2: 2.824838079991157
[2025-12-03 05:40:09] 2025-12-03 04:39:38,233 | INFO     | current chi2=2.824838079991157 (change=39.50203416592245 %)
[2025-12-03 05:40:09] 2025-12-03 04:39:38,234 | INFO     | sum of square deviations: 18112179597.0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,235 | INFO     | sum of deviations: 240934556355.5
[2025-12-03 05:40:09] 2025-12-03 04:39:38,235 | INFO     | mean x: 1764724354.5
[2025-12-03 05:40:09] 2025-12-03 04:39:38,235 | INFO     | mean y: 2589575.605670103
[2025-12-03 05:40:09] 2025-12-03 04:39:38,235 | INFO     | intersect: -23472391840.30457
[2025-12-03 05:40:09] 2025-12-03 04:39:38,235 | INFO     | chi2: 2.8244642456206868
[2025-12-03 05:40:09] 2025-12-03 04:39:38,235 | INFO     | current chi2=2.8244642456206868 (change=0.01323383358211447 %)
[2025-12-03 05:40:09] 2025-12-03 04:39:38,235 | INFO     | right removable region: 387
[2025-12-03 05:40:09] 2025-12-03 04:39:38,235 | INFO     | sum of square deviations: 18821458012.0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,237 | INFO     | sum of deviations: 65425648819.99997
[2025-12-03 05:40:09] 2025-12-03 04:39:38,237 | INFO     | mean x: 1764724812.0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,237 | INFO     | mean y: 2598279.099236641
[2025-12-03 05:40:09] 2025-12-03 04:39:38,237 | INFO     | intersect: -6131797140.226925
[2025-12-03 05:40:09] 2025-12-03 04:39:38,237 | INFO     | chi2: 2.1636474828834062
[2025-12-03 05:40:09] 2025-12-03 04:39:38,237 | INFO     | current chi2=2.1636474828834062 (change=53.66238071356007 %)
[2025-12-03 05:40:09] 2025-12-03 04:39:38,237 | INFO     | sum of square deviations: 18112179597.0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,238 | INFO     | sum of deviations: 42067276218.99999
[2025-12-03 05:40:09] 2025-12-03 04:39:38,238 | INFO     | mean x: 1764724964.5
[2025-12-03 05:40:09] 2025-12-03 04:39:38,238 | INFO     | mean y: 2603268.7216494847
[2025-12-03 05:40:09] 2025-12-03 04:39:38,239 | INFO     | intersect: -4096139907.6370196
[2025-12-03 05:40:09] 2025-12-03 04:39:38,239 | INFO     | chi2: 1.9237836618753485
[2025-12-03 05:40:09] 2025-12-03 04:39:38,239 | INFO     | current chi2=1.9237836618753485 (change=11.0860860147329 %)
[2025-12-03 05:40:09] 2025-12-03 04:39:38,239 | INFO     | left removable region: 20
[2025-12-03 05:40:09] 2025-12-03 04:39:38,239 | INFO     | sum of square deviations: 15327572968.0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,240 | INFO     | sum of deviations: 96029420373.0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,240 | INFO     | mean x: 1764724934.0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,240 | INFO     | mean y: 2621542.591280654
[2025-12-03 05:40:09] 2025-12-03 04:39:38,240 | INFO     | intersect: -11053630669.262531
[2025-12-03 05:40:09] 2025-12-03 04:39:38,240 | INFO     | chi2: 0.0381986029793328
[2025-12-03 05:40:09] 2025-12-03 04:39:38,240 | INFO     | current memory leak: 6.27 B/s (using 367 data points, chi2=0.04)
[2025-12-03 05:40:09] 2025-12-03 04:39:38,241 | INFO     | could have reported an average CPU frequency of 3933 MHz (17 samples)
[2025-12-03 05:40:09] 2025-12-03 04:39:38,241 | INFO     | ..............................
[2025-12-03 05:40:09] 2025-12-03 04:39:38,241 | INFO     | . Timing measurements:
[2025-12-03 05:40:09] 2025-12-03 04:39:38,241 | INFO     | . get job = 0 s
[2025-12-03 05:40:09] 2025-12-03 04:39:38,241 | INFO     | . initial setup = 1 s
[2025-12-03 05:40:09] 2025-12-03 04:39:38,241 | INFO     | . payload setup = 4 s
[2025-12-03 05:40:09] 2025-12-03 04:39:38,241 | INFO     | . stage-in = 0 s
[2025-12-03 05:40:09] 2025-12-03 04:39:38,241 | INFO     | . payload execution = 24221 s
[2025-12-03 05:40:09] 2025-12-03 04:39:38,241 | INFO     | . stage-out = 0 s
[2025-12-03 05:40:09] 2025-12-03 04:39:38,241 | INFO     | . log creation = 0 s
[2025-12-03 05:40:09] 2025-12-03 04:39:38,241 | INFO     | ..............................
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | 
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | job summary report
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | --------------------------------------------------
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | PanDA job id: 6897928787
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | task id: 47531111
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | errors: (none)
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | pilot state: finished 
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | transexitcode: 0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | exeerrorcode: 0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | exeerrordiag: 
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | exitcode: 0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | exitmsg: OK
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | cpuconsumptiontime: 71300 s
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | nevents: 1000
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | neventsw: 0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | pid: 2924168
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | pgrp: 2924168
[2025-12-03 05:40:09] 2025-12-03 04:39:38,475 | INFO     | corecount: 3
[2025-12-03 05:40:09] 2025-12-03 04:39:38,476 | INFO     | event service: False
[2025-12-03 05:40:09] 2025-12-03 04:39:38,476 | INFO     | sizes: {0: 2284449, 3: 2284711, 11: 2284739, 24230: 2339772, 24231: 2348772, 24233: 2348828, 24236: 2349266}
[2025-12-03 05:40:09] 2025-12-03 04:39:38,476 | INFO     | --------------------------------------------------
[2025-12-03 05:40:09] 2025-12-03 04:39:38,476 | INFO     | 
[2025-12-03 05:40:09] 2025-12-03 04:39:38,476 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-03 05:40:09] 2025-12-03 04:39:38,490 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,490 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,490 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,490 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,490 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,490 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,490 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,490 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,490 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,490 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,490 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,491 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,491 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,491 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,491 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,491 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,491 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,491 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 05:40:09] 2025-12-03 04:39:38,491 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,491 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 05:40:09] 2025-12-03 04:39:38,491 | INFO     | job 6897928787 has completed (purged errors)
[2025-12-03 05:40:09] 2025-12-03 04:39:38,491 | INFO     | overall cleanup function is called
[2025-12-03 05:40:09] 2025-12-03 04:39:38,675 | WARNING  | process 2924168 can no longer be monitored (due to stat problems) - aborting
[2025-12-03 05:40:09] 2025-12-03 04:39:38,704 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 05:40:09] 2025-12-03 04:39:38,740 | INFO     | number of running child processes to parent process 2924168: 1
[2025-12-03 05:40:09] 2025-12-03 04:39:38,740 | INFO     | maximum number of monitored processes: 9
[2025-12-03 05:40:09] 2025-12-03 04:39:38,740 | INFO     | aborting job monitoring since job object (job id=6897928787) has expired
[2025-12-03 05:40:09] 2025-12-03 04:39:39,500 | INFO     | --- collectZombieJob: --- 10, [2924168]
[2025-12-03 05:40:09] 2025-12-03 04:39:39,500 | INFO     | zombie collector waiting for pid 2924168
[2025-12-03 05:40:09] 2025-12-03 04:39:39,500 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 05:40:09] 2025-12-03 04:39:39,500 | INFO     | collected zombie processes
[2025-12-03 05:40:09] 2025-12-03 04:39:39,500 | INFO     | will attempt to kill all subprocesses of pid=2924168
[2025-12-03 05:40:09] 2025-12-03 04:39:39,540 | INFO     | process IDs to be killed: [2924168] (in reverse order)
[2025-12-03 05:40:09] 2025-12-03 04:39:39,564 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 05:40:09] 2025-12-03 04:39:39,564 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 05:40:09] 2025-12-03 04:39:39,565 | INFO     | did not find any defunct processes belonging to 2924168
[2025-12-03 05:40:09] 2025-12-03 04:39:39,566 | INFO     | did not find any defunct processes belonging to 2924168
[2025-12-03 05:40:09] 2025-12-03 04:39:39,567 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 05:40:09] 2025-12-03 04:39:39,567 | INFO     | ready for new job
[2025-12-03 05:40:09] 2025-12-03 04:39:39,567 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 05:40:09] 2025-12-03 04:39:39,568 | INFO     | ***************************************
[2025-12-03 05:40:09] 2025-12-03 04:39:39,568 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 05:40:09] 2025-12-03 04:39:39,568 | INFO     | ***************************************
[2025-12-03 05:40:09] 2025-12-03 04:39:39,568 | INFO     | 
[2025-12-03 05:40:09] 2025-12-03 04:39:39,568 | INFO     | architecture information:
[2025-12-03 05:40:09] 2025-12-03 04:39:39,568 | INFO     | executing command: cat /etc/os-release
[2025-12-03 05:40:09] 2025-12-03 04:39:39,577 | INFO     | cat /etc/os-release:
[2025-12-03 05:40:09] NAME="CentOS Linux"
[2025-12-03 05:40:09] VERSION="7 (Core)"
[2025-12-03 05:40:09] ID="centos"
[2025-12-03 05:40:09] ID_LIKE="rhel fedora"
[2025-12-03 05:40:09] VERSION_ID="7"
[2025-12-03 05:40:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 05:40:09] ANSI_COLOR="0;31"
[2025-12-03 05:40:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 05:40:09] HOME_URL="https://www.centos.org/"
[2025-12-03 05:40:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 05:40:09] 
[2025-12-03 05:40:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 05:40:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 05:40:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 05:40:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 05:40:09] 
[2025-12-03 05:40:09] 2025-12-03 04:39:39,577 | INFO     | ***************************************
[2025-12-03 05:40:09] 2025-12-03 04:39:40,080 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-03 05:40:09] 2025-12-03 04:39:40,092 | INFO     | sufficient remaining disk space (334875328512 B)
[2025-12-03 05:40:09] 2025-12-03 04:39:40,092 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 05:40:09] 2025-12-03 04:39:40,093 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 05:40:09] 2025-12-03 04:39:40,093 | INFO     | update_server=False
[2025-12-03 05:40:09] 2025-12-03 04:39:40,093 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 05:40:09] 2025-12-03 04:39:40,093 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:40:09] 2025-12-03 04:39:40,093 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 05:40:09] 2025-12-03 04:39:40,093 | INFO     | aborting loop
[2025-12-03 05:40:09] 2025-12-03 04:39:40,125 | INFO     | all job control threads have been joined
[2025-12-03 05:40:09] 2025-12-03 04:39:40,493 | INFO     | all payload control threads have been joined
[2025-12-03 05:40:09] 2025-12-03 04:39:40,930 | INFO     | all data control threads have been joined
[2025-12-03 05:40:09] 2025-12-03 04:39:41,098 | INFO     | [job] retrieve thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:41,099 | INFO     | [job] queue monitor thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:41,099 | INFO     | [job] job monitor thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:41,130 | INFO     | [job] control thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:41,198 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:41,211 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:41,348 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 05:40:09] 2025-12-03 04:39:41,378 | INFO     | [payload] validate_post thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:41,490 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 05:40:09] 2025-12-03 04:39:41,498 | INFO     | [payload] control thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:41,588 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:41,884 | INFO     | [payload] failed_post thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:41,936 | INFO     | [data] control thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:41,989 | INFO     | [data] copytool_in thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:42,347 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:42,560 | INFO     | [job] validate thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:43,354 | INFO     | [data] copytool_out thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:45,497 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 05:40:09] 2025-12-03 04:39:56,927 | INFO     | [monitor] cgroup control has ended
[2025-12-03 05:40:09] 2025-12-03 04:39:58,032 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140530337720128)>', '<ExcThread(monitor, started 140530065315584)>']
[2025-12-03 05:40:09] 2025-12-03 04:40:03,058 | INFO     | all workflow threads have been joined
[2025-12-03 05:40:09] 2025-12-03 04:40:03,058 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 05:40:09] 2025-12-03 04:40:03,059 | INFO     | traces error code: 0
[2025-12-03 05:40:09] 2025-12-03 04:40:03,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 05:40:09] 2025-12-03 04:40:09,667 | INFO     | PID=2917063 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 05:40:09] 2025-12-03 04:40:09,667 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 05:40:09] 2025-12-03 04:40:09,667 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 05:40:09] 2025-12-03 04:40:09,667 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 05:40:09] 2025-12-03 04:40:09,667 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 05:40:09] 2025-12-03 04:40:09,667 | CRITICAL | thread 'MainThread' is not alive
[2025-12-03 05:40:09] 2025-12-03 04:40:09,668 | INFO     | [monitor] control thread has ended
[2025-12-03 05:40:09] 2025-12-03 04:40:09,713 [wrapper] ==== pilot stdout END ====
[2025-12-03 05:40:09] 2025-12-03 04:40:09,716 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 05:40:09] 2025-12-03 04:40:09,718 [wrapper] pilotpid: 2917063
[2025-12-03 05:40:09] 2025-12-03 04:40:09,720 [wrapper] Pilot exit status: 0
[2025-12-03 05:40:09] 2025-12-03 04:40:09,727 [wrapper] pandaids: 6897928787
[2025-12-03 05:40:09] 2025-12-03 04:40:09,743 [wrapper] cleanup supervisor_pilot 2966343 2917064
[2025-12-03 05:40:09] 2025-12-03 04:40:09,746 [wrapper] Test setup, not cleaning
[2025-12-03 05:40:09] 2025-12-03 04:40:09,748 [wrapper] apfmon messages muted
[2025-12-03 05:40:09] 2025-12-03 04:40:09,750 [wrapper] ==== wrapper stdout END ====
[2025-12-03 05:40:09] 2025-12-03 04:40:09,753 [wrapper] ==== wrapper stderr END ====
[2025-12-03 05:40:09]  *** Error codes and diagnostics ***
[2025-12-03 05:40:09]     "exeErrorCode": 0,
[2025-12-03 05:40:09]     "exeErrorDiag": "",
[2025-12-03 05:40:09]     "pilotErrorCode": 0,
[2025-12-03 05:40:09]     "pilotErrorDiag": "",
[2025-12-03 05:40:09]  *** Listing of results directory ***
[2025-12-03 05:40:09] total 1042756
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-03 05:40:09] -rwx------ 1 boinc boinc     36292 Nov 28 23:43 runpilot2-wrapper.sh
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc      5112 Nov 28 23:43 queuedata.json
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc       100 Dec  2 22:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 05:40:09] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 22:55 run_atlas
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc       105 Dec  2 22:55 job.xml
[2025-12-03 05:40:09] -rw-r--r-- 2 boinc boinc 371705672 Dec  2 22:55 EVNT.47531104._000009.pool.root.1
[2025-12-03 05:40:09] -rw-r--r-- 2 boinc boinc    590121 Dec  2 22:55 input.tar.gz
[2025-12-03 05:40:09] -rw-r--r-- 2 boinc boinc     15847 Dec  2 22:55 start_atlas.sh
[2025-12-03 05:40:09] drwxrwx--x 2 boinc boinc      4096 Dec  2 22:55 shared
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc         0 Dec  2 22:55 boinc_setup_complete
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc      6442 Dec  2 22:55 init_data.xml
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc         0 Dec  2 22:55 boinc_lockfile
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc      2877 Dec  2 22:55 pandaJob.out
[2025-12-03 05:40:09] -rw------- 1 boinc boinc    989224 Dec  2 22:55 agis_schedconf.cvmfs.json
[2025-12-03 05:40:09] drwx------ 5 boinc boinc      4096 Dec  2 22:55 pilot3
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc       531 Dec  3 05:36 boinc_task_state.xml
[2025-12-03 05:40:09] -rw------- 1 boinc boinc 682887764 Dec  3 05:39 HITS.47531111._000088.pool.root.1
[2025-12-03 05:40:09] -rw------- 1 boinc boinc        95 Dec  3 05:39 pilot_heartbeat.json
[2025-12-03 05:40:09] -rw------- 1 boinc boinc      1027 Dec  3 05:39 memory_monitor_summary.json
[2025-12-03 05:40:09] -rw------- 1 boinc boinc   1516240 Dec  3 05:39 agis_ddmendpoints.agis.ALL.json
[2025-12-03 05:40:09] -rw------- 1 boinc boinc   1198376 Dec  3 05:39 log.47531111._000088.job.log.tgz.1
[2025-12-03 05:40:09] -rw------- 1 boinc boinc     27445 Dec  3 05:39 heartbeat.json
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc      8192 Dec  3 05:39 boinc_mmap_file
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc        28 Dec  3 05:39 wrapper_checkpoint.txt
[2025-12-03 05:40:09] -rw------- 1 boinc boinc       817 Dec  3 05:40 pilotlog.txt
[2025-12-03 05:40:09] -rw------- 1 boinc boinc   3422415 Dec  3 05:40 log.47531111._000088.job.log.1
[2025-12-03 05:40:09] -rw------- 1 boinc boinc       353 Dec  3 05:40 output.list
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc       620 Dec  3 05:40 runtime_log
[2025-12-03 05:40:09] -rw------- 1 boinc boinc   4659200 Dec  3 05:40 result.tar.gz
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc      8908 Dec  3 05:40 runtime_log.err
[2025-12-03 05:40:09] -rw------- 1 boinc boinc       667 Dec  3 05:40 ZkoNDmdMMj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3jOKDmMIB5Hm.diag
[2025-12-03 05:40:09] -rw-r--r-- 1 boinc boinc     21252 Dec  3 05:40 stderr.txt
[2025-12-03 05:40:09] HITS file was successfully produced:
[2025-12-03 05:40:09] -rw------- 1 boinc boinc 682887764 Dec  3 05:39 shared/HITS.pool.root.1
[2025-12-03 05:40:09]  *** Contents of shared directory: ***
[2025-12-03 05:40:09] total 1035036
[2025-12-03 05:40:09] -rw-r--r-- 2 boinc boinc 371705672 Dec  2 22:55 ATLAS.root_0
[2025-12-03 05:40:09] -rw-r--r-- 2 boinc boinc    590121 Dec  2 22:55 input.tar.gz
[2025-12-03 05:40:09] -rw-r--r-- 2 boinc boinc     15847 Dec  2 22:55 start_atlas.sh
[2025-12-03 05:40:09] -rw------- 1 boinc boinc 682887764 Dec  3 05:39 HITS.pool.root.1
[2025-12-03 05:40:09] -rw------- 1 boinc boinc   4659200 Dec  3 05:40 result.tar.gz
05:40:11 (2913341): run_atlas exited; CPU time 71346.413786
05:40:11 (2913341): called boinc_finish(0)

</stderr_txt>
]]>

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