Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:52:50 (357566): wrapper (7.7.26015): starting
14:52:50 (357566): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 14:52:50] Arguments: --nthreads 12
[2025-11-29 14:52:50] Threads: 12
[2025-11-29 14:52:50] Checking for CVMFS
[2025-11-29 14:52:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 14:52:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 14:52:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 14:52:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 14:52:51] 2.11.5.0 3120608 33000 282324 153458 2 724 26298206 45568001 10181 130560 0 252193313 99.757 164478172 24401 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-29 14:52:51] CVMFS is ok
[2025-11-29 14:52:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 14:52:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 14:52:51] Further information can be found at the LHC@home message board.
[2025-11-29 14:52:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 14:52:51] Checking for apptainer binary...
[2025-11-29 14:52:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 14:52:51] Running /usr/bin/apptainer --version
[2025-11-29 14:52:51] apptainer version 1.4.1-1.el9
[2025-11-29 14:52:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 14:52:51] wns0059.triumf.lcg
[2025-11-29 14:52:51] apptainer works
[2025-11-29 14:52:51] Set ATHENA_PROC_NUMBER=12
[2025-11-29 14:52:51] Set ATHENA_CORE_NUMBER=12
[2025-11-29 14:52:51] Starting ATLAS job with PandaID=6897928757
[2025-11-29 14:52:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 14:58:10]  *** The last 200 lines of the pilot log: ***
[2025-11-29 14:58:10] 2025-11-29 22:57:08,703 | INFO     | ..............................
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . Timing measurements:
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . get job = 0 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . initial setup = 2 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . payload setup = 12 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . stage-in = 0 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . payload execution = 87 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . stage-out = 0 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . log creation = 0 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | ..............................
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 14:58:10] 2025-11-29 22:57:08,705 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897928757/pilotlog.txt
[2025-11-29 14:58:10] 2025-11-29 22:57:08,724 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-29 14:58:10] - Log from pilotlog.txt -
[2025-11-29 14:58:10] 2025-11-29 22:57:08,699 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897928757/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 14:58:10] 2025-11-29 22:57:08,700 | INFO     | extracted standard info from prmon json
[2025-11-29 14:58:10] 2025-11-29 22:57:08,700 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 14:58:10] 2025-11-29 22:57:08,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 14:58:10] 2025-11-29 22:57:08,701 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 14:58:10] 2025-11-29 22:57:08,701 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 14:58:10] 2025-11-29 22:57:08,702 | WARNING  | wrong length of table data, x=[1764456819.0, 1764456880.0], y=[1220.0, 592199.0] (must be same and length>=4)
[2025-11-29 14:58:10] 2025-11-29 22:57:08,703 | INFO     | could have reported an average CPU frequency of 2033 MHz (4 samples)
[2025-11-29 14:58:10] 2025-11-29 22:57:08,703 | INFO     | ..............................
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . Timing measurements:
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . get job = 0 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . initial setup = 2 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . payload setup = 12 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . stage-in = 0 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . payload execution = 87 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . stage-out = 0 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . log creation = 0 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | ..............................
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 14:58:10] 2025-11-29 22:57:08,705 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897928757/pilotlog.txt
[2025-11-29 14:58:10] 2025-11-29 22:57:08,724 | WARNING  | 
[2025-11-29 14:58:10] [begin log extracts]
[2025-11-29 14:58:10] - Log from pilotlog.txt -
[2025-11-29 14:58:10] 2025-11-29 22:57:08,699 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897928757/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 14:58:10] 2025-11-29 22:57:08,700 | INFO     | extracted standard info from prmon json
[2025-11-29 14:58:10] 2025-11-29 22:57:08,700 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 14:58:10] 2025-11-29 22:57:08,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 14:58:10] 2025-11-29 22:57:08,701 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 14:58:10] 2025-11-29 22:57:08,701 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 14:58:10] 2025-11-29 22:57:08,702 | WARNING  | wrong length of table data, x=[1764456819.0, 1764456880.0], y=[1220.0, 592199.0] (must be same and length>=4)
[2025-11-29 14:58:10] 2025-11-29 22:57:08,703 | INFO     | could have reported an average CPU frequency of 2033 MHz (4 samples)
[2025-11-29 14:58:10] 2025-11-29 22:57:08,703 | INFO     | ..............................
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . Timing measurements:
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . get job = 0 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . initial setup = 2 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . payload setup = 12 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . stage-in = 0 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . payload execution = 87 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . stage-out = 0 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | . log creation = 0 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | ..............................
[2025-11-29 14:58:10] 2025-11-29 22:57:08,704 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 14:58:10] 2025-11-29 22:57:08,705 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897928757/pilotlog.txt
[2025-11-29 14:58:10] [end log extracts]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,724 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-29 14:58:10] 2025-11-29 22:57:08,725 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-29 14:58:10] 2025-11-29 22:57:08,745 | INFO     | time since job start (244s) is within the limit (172800.0s)
[2025-11-29 14:58:10] 2025-11-29 22:57:08,756 | INFO     | 247s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-29 14:58:10] 2025-11-29 22:57:08,805 | INFO     | 
[2025-11-29 14:58:10] 2025-11-29 22:57:08,805 | INFO     | job summary report
[2025-11-29 14:58:10] 2025-11-29 22:57:08,806 | INFO     | --------------------------------------------------
[2025-11-29 14:58:10] 2025-11-29 22:57:08,806 | INFO     | PanDA job id: 6897928757
[2025-11-29 14:58:10] 2025-11-29 22:57:08,806 | INFO     | task id: 47531111
[2025-11-29 14:58:10] 2025-11-29 22:57:08,806 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-29 14:54:57,805 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-29 14:58:10] 2025-11-29 22:57:08,806 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-29 14:58:10] 2025-11-29 22:57:08,806 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 14:58:10] 2025-11-29 22:57:08,807 | INFO     | pilot state: failed 
[2025-11-29 14:58:10] 2025-11-29 22:57:08,807 | INFO     | transexitcode: 65
[2025-11-29 14:58:10] 2025-11-29 22:57:08,807 | INFO     | exeerrorcode: 65
[2025-11-29 14:58:10] 2025-11-29 22:57:08,807 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-29 14:58:10] 2025-11-29 22:57:08,807 | INFO     | exitcode: 65
[2025-11-29 14:58:10] 2025-11-29 22:57:08,807 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-29 14:58:10] 2025-11-29 22:57:08,807 | INFO     | cpuconsumptiontime: 81 s
[2025-11-29 14:58:10] 2025-11-29 22:57:08,807 | INFO     | nevents: 0
[2025-11-29 14:58:10] 2025-11-29 22:57:08,808 | INFO     | neventsw: 0
[2025-11-29 14:58:10] 2025-11-29 22:57:08,808 | INFO     | pid: 369537
[2025-11-29 14:58:10] 2025-11-29 22:57:08,808 | INFO     | pgrp: 369537
[2025-11-29 14:58:10] 2025-11-29 22:57:08,808 | INFO     | corecount: 12
[2025-11-29 14:58:10] 2025-11-29 22:57:08,808 | INFO     | event service: False
[2025-11-29 14:58:10] 2025-11-29 22:57:08,808 | INFO     | sizes: {0: 2284443, 5: 2284705, 11: 2284761, 104: 2306067, 105: 2310357, 107: 2310385, 228: 2310679}
[2025-11-29 14:58:10] 2025-11-29 22:57:08,808 | INFO     | --------------------------------------------------
[2025-11-29 14:58:10] 2025-11-29 22:57:08,809 | INFO     | 
[2025-11-29 14:58:10] 2025-11-29 22:57:08,809 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-29 14:58:10] 2025-11-29 22:57:08,831 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,832 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,832 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,832 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,832 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,832 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,832 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,833 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,833 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 14:58:10] 2025-11-29 22:57:08,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,833 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 14:58:10] 2025-11-29 22:57:08,833 | INFO     | job 6897928757 has completed (purged errors)
[2025-11-29 14:58:10] 2025-11-29 22:57:08,833 | INFO     | overall cleanup function is called
[2025-11-29 14:58:10] 2025-11-29 22:57:09,840 | INFO     | --- collectZombieJob: --- 10, [369537]
[2025-11-29 14:58:10] 2025-11-29 22:57:09,841 | INFO     | zombie collector waiting for pid 369537
[2025-11-29 14:58:10] 2025-11-29 22:57:09,842 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 14:58:10] 2025-11-29 22:57:09,842 | INFO     | collected zombie processes
[2025-11-29 14:58:10] 2025-11-29 22:57:09,842 | INFO     | will attempt to kill all subprocesses of pid=369537
[2025-11-29 14:58:10] 2025-11-29 22:57:10,466 | INFO     | PID=361231 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-29 14:58:10] 2025-11-29 22:57:10,467 | INFO     | .. there are 21 such processes running
[2025-11-29 14:58:10] 2025-11-29 22:57:10,492 | INFO     | process IDs to be killed: [369537] (in reverse order)
[2025-11-29 14:58:10] 2025-11-29 22:57:10,574 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 14:58:10] 2025-11-29 22:57:10,574 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 14:58:10] 2025-11-29 22:57:10,584 | INFO     | did not find any defunct processes belonging to 369537
[2025-11-29 14:58:10] 2025-11-29 22:57:10,592 | INFO     | did not find any defunct processes belonging to 369537
[2025-11-29 14:58:10] 2025-11-29 22:57:10,594 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 14:58:10] 2025-11-29 22:57:10,594 | INFO     | ready for new job
[2025-11-29 14:58:10] 2025-11-29 22:57:10,594 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 14:58:10] 2025-11-29 22:57:10,596 | INFO     | ***************************************
[2025-11-29 14:58:10] 2025-11-29 22:57:10,596 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 14:58:10] 2025-11-29 22:57:10,596 | INFO     | ***************************************
[2025-11-29 14:58:10] 2025-11-29 22:57:10,596 | INFO     | 
[2025-11-29 14:58:10] 2025-11-29 22:57:10,599 | INFO     | architecture information:
[2025-11-29 14:58:10] 2025-11-29 22:57:10,600 | INFO     | executing command: cat /etc/os-release
[2025-11-29 14:58:10] 2025-11-29 22:57:10,617 | INFO     | cat /etc/os-release:
[2025-11-29 14:58:10] NAME="CentOS Linux"
[2025-11-29 14:58:10] VERSION="7 (Core)"
[2025-11-29 14:58:10] ID="centos"
[2025-11-29 14:58:10] ID_LIKE="rhel fedora"
[2025-11-29 14:58:10] VERSION_ID="7"
[2025-11-29 14:58:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 14:58:10] ANSI_COLOR="0;31"
[2025-11-29 14:58:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 14:58:10] HOME_URL="https://www.centos.org/"
[2025-11-29 14:58:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 14:58:10] 
[2025-11-29 14:58:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 14:58:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 14:58:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 14:58:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 14:58:10] 
[2025-11-29 14:58:10] 2025-11-29 22:57:10,617 | INFO     | ***************************************
[2025-11-29 14:58:10] 2025-11-29 22:57:11,121 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-29 14:58:10] 2025-11-29 22:57:11,143 | INFO     | sufficient remaining disk space (2078526144512 B)
[2025-11-29 14:58:10] 2025-11-29 22:57:11,143 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 14:58:10] 2025-11-29 22:57:11,144 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 14:58:10] 2025-11-29 22:57:11,144 | INFO     | update_server=False
[2025-11-29 14:58:10] 2025-11-29 22:57:11,144 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 14:58:10] 2025-11-29 22:57:11,144 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 14:58:10] 2025-11-29 22:57:11,145 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-29 14:58:10] 2025-11-29 22:57:11,146 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 14:58:10] 2025-11-29 22:57:11,146 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 14:58:10] 2025-11-29 22:57:11,146 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 14:58:10] 2025-11-29 22:57:11,291 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 14:58:10] 2025-11-29 22:57:11,292 | INFO     | aborting loop
[2025-11-29 14:58:10] 2025-11-29 22:57:11,300 | INFO     | all payload control threads have been joined
[2025-11-29 14:58:10] 2025-11-29 22:57:11,492 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 14:58:10] 2025-11-29 22:57:11,565 | INFO     | all data control threads have been joined
[2025-11-29 14:58:10] 2025-11-29 22:57:11,849 | INFO     | all job control threads have been joined
[2025-11-29 14:58:10] 2025-11-29 22:57:12,149 | INFO     | [job] retrieve thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:12,208 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:12,298 | INFO     | [job] job monitor thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:12,306 | INFO     | [payload] control thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:12,325 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:12,461 | INFO     | [payload] failed_post thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:12,571 | INFO     | [data] control thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:12,679 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:12,855 | INFO     | [job] control thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:13,276 | INFO     | [data] copytool_in thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:13,417 | INFO     | [payload] validate_post thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:13,434 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:13,500 | INFO     | [data] copytool_out thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:13,578 | INFO     | [job] validate thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:13,819 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 14:58:10] 2025-11-29 22:57:14,824 | INFO     | [job] queue monitor thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:57:15,152 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 14:58:10] 2025-11-29 22:58:04,286 | INFO     | [monitor] cgroup control has ended
[2025-11-29 14:58:10] 2025-11-29 22:58:04,803 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140320368764736)>', '<ExcThread(monitor, started 140319827928832)>']
[2025-11-29 14:58:10] 2025-11-29 22:58:05,409 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 14:58:10] 2025-11-29 22:58:05,410 | INFO     | [monitor] control thread has ended
[2025-11-29 14:58:10] 2025-11-29 22:58:09,828 | INFO     | all workflow threads have been joined
[2025-11-29 14:58:10] 2025-11-29 22:58:09,829 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 14:58:10] 2025-11-29 22:58:09,830 | INFO     | traces error code: 0
[2025-11-29 14:58:10] 2025-11-29 22:58:09,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 14:58:10] 2025-11-29 22:58:09,969 [wrapper] ==== pilot stdout END ====
[2025-11-29 14:58:10] 2025-11-29 22:58:09,972 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 14:58:10] 2025-11-29 22:58:09,976 [wrapper] pilotpid: 361231
[2025-11-29 14:58:10] 2025-11-29 22:58:09,979 [wrapper] Pilot exit status: 0
[2025-11-29 14:58:10] 2025-11-29 22:58:09,992 [wrapper] pandaids: 6897928757
[2025-11-29 14:58:10] 2025-11-29 22:58:10,050 [wrapper] cleanup supervisor_pilot  361237 361232
[2025-11-29 14:58:10] 2025-11-29 22:58:10,056 [wrapper] Test setup, not cleaning
[2025-11-29 14:58:10] 2025-11-29 22:58:10,061 [wrapper] apfmon messages muted
[2025-11-29 14:58:10] 2025-11-29 22:58:10,064 [wrapper] ==== wrapper stdout END ====
[2025-11-29 14:58:10] 2025-11-29 22:58:10,067 [wrapper] ==== wrapper stderr END ====
[2025-11-29 14:58:10]  *** Error codes and diagnostics ***
[2025-11-29 14:58:10]     "exeErrorCode": 65,
[2025-11-29 14:58:10]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-29 14:58:10]     "pilotErrorCode": 1305,
[2025-11-29 14:58:10]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-29 14:58:10]  *** Listing of results directory ***
[2025-11-29 14:58:10] total 373596
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc    576529 Nov 28 14:41 pilot3.tar.gz
[2025-11-29 14:58:10] -rwx------. 1 boinc boinc     36292 Nov 28 14:43 runpilot2-wrapper.sh
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc      5112 Nov 28 14:43 queuedata.json
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc       100 Nov 29 14:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 14:58:10] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 14:52 run_atlas
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc       105 Nov 29 14:52 job.xml
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc      6593 Nov 29 14:52 init_data.xml
[2025-11-29 14:58:10] -rw-r--r--. 2 boinc boinc 378348762 Nov 29 14:52 EVNT.47531104._000004.pool.root.1
[2025-11-29 14:58:10] -rw-r--r--. 2 boinc boinc     15847 Nov 29 14:52 start_atlas.sh
[2025-11-29 14:58:10] drwxrwx--x. 2 boinc boinc      4096 Nov 29 14:52 shared
[2025-11-29 14:58:10] -rw-r--r--. 2 boinc boinc    590116 Nov 29 14:52 input.tar.gz
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc         0 Nov 29 14:52 boinc_lockfile
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc      2877 Nov 29 14:52 pandaJob.out
[2025-11-29 14:58:10] -rw-------. 1 boinc boinc    991826 Nov 29 14:53 agis_schedconf.cvmfs.json
[2025-11-29 14:58:10] -rw-------. 1 boinc boinc   1516240 Nov 29 14:53 agis_ddmendpoints.agis.ALL.json
[2025-11-29 14:58:10] drwx------. 5 boinc boinc      4096 Nov 29 14:53 pilot3
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc       524 Nov 29 14:54 boinc_task_state.xml
[2025-11-29 14:58:10] -rw-------. 1 boinc boinc      1013 Nov 29 14:55 memory_monitor_summary.json
[2025-11-29 14:58:10] -rw-------. 1 boinc boinc     50359 Nov 29 14:55 log.47531111._000072.job.log.tgz.1
[2025-11-29 14:58:10] -rw-------. 1 boinc boinc        95 Nov 29 14:57 pilot_heartbeat.json
[2025-11-29 14:58:10] -rw-------. 1 boinc boinc      9259 Nov 29 14:57 heartbeat.json
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc      8192 Nov 29 14:58 boinc_mmap_file
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc        23 Nov 29 14:58 wrapper_checkpoint.txt
[2025-11-29 14:58:10] -rw-------. 1 boinc boinc      4551 Nov 29 14:58 pilotlog.txt
[2025-11-29 14:58:10] -rw-------. 1 boinc boinc     98043 Nov 29 14:58 log.47531111._000072.job.log.1
[2025-11-29 14:58:10] -rw-------. 1 boinc boinc       186 Nov 29 14:58 output.list
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc       620 Nov 29 14:58 runtime_log
[2025-11-29 14:58:10] -rw-------. 1 boinc boinc    174080 Nov 29 14:58 result.tar.gz
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc      8636 Nov 29 14:58 runtime_log.err
[2025-11-29 14:58:10] -rw-------. 1 boinc boinc       644 Nov 29 14:58 7dbNDmdMMj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvjOKDmQ0VYkm.diag
[2025-11-29 14:58:10] -rw-r--r--. 1 boinc boinc     22462 Nov 29 14:58 stderr.txt
[2025-11-29 14:58:10] No HITS result produced
[2025-11-29 14:58:10]  *** Contents of shared directory: ***
[2025-11-29 14:58:10] total 370252
[2025-11-29 14:58:10] -rw-r--r--. 2 boinc boinc 378348762 Nov 29 14:52 ATLAS.root_0
[2025-11-29 14:58:10] -rw-r--r--. 2 boinc boinc     15847 Nov 29 14:52 start_atlas.sh
[2025-11-29 14:58:10] -rw-r--r--. 2 boinc boinc    590116 Nov 29 14:52 input.tar.gz
[2025-11-29 14:58:10] -rw-------. 1 boinc boinc    174080 Nov 29 14:58 result.tar.gz
14:58:11 (357566): run_atlas exited; CPU time 75.087994
14:58:11 (357566): called boinc_finish(0)

</stderr_txt>
]]>

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