Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:41:52 (27929): wrapper (7.7.26015): starting
02:41:52 (27929): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 02:41:52] Arguments: --nthreads 8
[2025-11-30 02:41:52] Threads: 8
[2025-11-30 02:41:52] Checking for CVMFS
[2025-11-30 02:41:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 02:41:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 02:41:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 02:41:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 02:41:52] 2.11.0.0 6420 70648 98488 153463 0 75 3666182 4096001 517 130560 1 5327487 99.356 7079819 638 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-30 02:41:52] CVMFS is ok
[2025-11-30 02:41:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 02:41:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 02:41:52] Further information can be found at the LHC@home message board.
[2025-11-30 02:41:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 02:41:52] Checking for apptainer binary...
[2025-11-30 02:41:52] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-30 02:41:52] apptainer is not installed, using version from CVMFS
[2025-11-30 02:41:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 02:41:52] WARNING: Environment variable TMPDIR already has value [/tmp/job_10935342/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node369
[2025-11-30 02:41:52] apptainer works
[2025-11-30 02:41:52] Set ATHENA_PROC_NUMBER=8
[2025-11-30 02:41:52] Set ATHENA_CORE_NUMBER=8
[2025-11-30 02:41:52] Starting ATLAS job with PandaID=6899134357
[2025-11-30 02:41:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10935342/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 06:34:47]  *** The last 200 lines of the pilot log: ***
[2025-11-30 06:34:47] 2025-11-30 05:34:14,849 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 06:34:47] 2025-11-30 05:34:14,849 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 06:34:47] 2025-11-30 05:34:14,851 | INFO     | fitting pss+swap vs Time
[2025-11-30 06:34:47] 2025-11-30 05:34:14,851 | INFO     | sum of square deviations: 3723716330.0
[2025-11-30 06:34:47] 2025-11-30 05:34:14,852 | INFO     | sum of deviations: 602852661232.0
[2025-11-30 06:34:47] 2025-11-30 05:34:14,852 | INFO     | mean x: 1764473891.0
[2025-11-30 06:34:47] 2025-11-30 05:34:14,852 | INFO     | mean y: 3902224.0742358076
[2025-11-30 06:34:47] 2025-11-30 05:34:14,852 | INFO     | intersect: -285656359352.2237
[2025-11-30 06:34:47] 2025-11-30 05:34:14,852 | INFO     | chi2: 4.790869679230349
[2025-11-30 06:34:47] 2025-11-30 05:34:14,852 | INFO     | sum of square deviations: 3485088600.0
[2025-11-30 06:34:47] 2025-11-30 05:34:14,853 | INFO     | sum of deviations: 652654519833.5
[2025-11-30 06:34:47] 2025-11-30 05:34:14,853 | INFO     | mean x: 1764473738.5
[2025-11-30 06:34:47] 2025-11-30 05:34:14,853 | INFO     | mean y: 3933535.1383928573
[2025-11-30 06:34:47] 2025-11-30 05:34:14,853 | INFO     | intersect: -330430064773.98303
[2025-11-30 06:34:47] 2025-11-30 05:34:14,853 | INFO     | chi2: 2.8580820734788954
[2025-11-30 06:34:47] 2025-11-30 05:34:14,853 | INFO     | current chi2=2.8580820734788954 (change=40.34314717702684 %)
[2025-11-30 06:34:47] 2025-11-30 05:34:14,854 | INFO     | sum of square deviations: 3256879670.0
[2025-11-30 06:34:47] 2025-11-30 05:34:14,854 | INFO     | sum of deviations: 602728193538.0
[2025-11-30 06:34:47] 2025-11-30 05:34:14,854 | INFO     | mean x: 1764473586.0
[2025-11-30 06:34:47] 2025-11-30 05:34:14,854 | INFO     | mean y: 3900177.684931507
[2025-11-30 06:34:47] 2025-11-30 05:34:14,854 | INFO     | intersect: -326535021978.8395
[2025-11-30 06:34:47] 2025-11-30 05:34:14,854 | INFO     | chi2: 2.8298432143747236
[2025-11-30 06:34:47] 2025-11-30 05:34:14,855 | INFO     | current chi2=2.8298432143747236 (change=0.9880352760408686 %)
[2025-11-30 06:34:47] 2025-11-30 05:34:14,855 | INFO     | right removable region: 218
[2025-11-30 06:34:47] 2025-11-30 05:34:14,855 | INFO     | sum of square deviations: 3485088600.0
[2025-11-30 06:34:47] 2025-11-30 05:34:14,855 | INFO     | sum of deviations: 510041728135.49994
[2025-11-30 06:34:47] 2025-11-30 05:34:14,856 | INFO     | mean x: 1764474043.5
[2025-11-30 06:34:47] 2025-11-30 05:34:14,856 | INFO     | mean y: 3961282.6116071427
[2025-11-30 06:34:47] 2025-11-30 05:34:14,856 | INFO     | intersect: -258226314526.43762
[2025-11-30 06:34:47] 2025-11-30 05:34:14,856 | INFO     | chi2: 2.5844380340652355
[2025-11-30 06:34:47] 2025-11-30 05:34:14,856 | INFO     | current chi2=2.5844380340652355 (change=46.05492933215365 %)
[2025-11-30 06:34:47] 2025-11-30 05:34:14,856 | INFO     | sum of square deviations: 3256879670.0
[2025-11-30 06:34:47] 2025-11-30 05:34:14,857 | INFO     | sum of deviations: 480609813948.9999
[2025-11-30 06:34:47] 2025-11-30 05:34:14,857 | INFO     | mean x: 1764474196.0
[2025-11-30 06:34:47] 2025-11-30 05:34:14,857 | INFO     | mean y: 3980935.2100456622
[2025-11-30 06:34:47] 2025-11-30 05:34:14,857 | INFO     | intersect: -260375185930.7771
[2025-11-30 06:34:47] 2025-11-30 05:34:14,857 | INFO     | chi2: 2.5719694928834147
[2025-11-30 06:34:47] 2025-11-30 05:34:14,857 | INFO     | current chi2=2.5719694928834147 (change=0.48244690015679087 %)
[2025-11-30 06:34:47] 2025-11-30 05:34:14,857 | INFO     | left removable region: 20
[2025-11-30 06:34:47] 2025-11-30 05:34:14,857 | INFO     | sum of square deviations: 2406926989.5
[2025-11-30 06:34:47] 2025-11-30 05:34:14,858 | INFO     | sum of deviations: 429074039253.5
[2025-11-30 06:34:47] 2025-11-30 05:34:14,858 | INFO     | mean x: 1764474165.5
[2025-11-30 06:34:47] 2025-11-30 05:34:14,858 | INFO     | mean y: 4014583.267676768
[2025-11-30 06:34:47] 2025-11-30 05:34:14,858 | INFO     | intersect: -314542318002.75183
[2025-11-30 06:34:47] 2025-11-30 05:34:14,858 | INFO     | chi2: 0.4429471477311363
[2025-11-30 06:34:47] 2025-11-30 05:34:14,858 | INFO     | current memory leak: 178.27 B/s (using 198 data points, chi2=0.44)
[2025-11-30 06:34:47] 2025-11-30 05:34:14,858 | INFO     | could have reported an average CPU frequency of 2829 MHz (11 samples)
[2025-11-30 06:34:47] 2025-11-30 05:34:14,858 | INFO     | ..............................
[2025-11-30 06:34:47] 2025-11-30 05:34:14,858 | INFO     | . Timing measurements:
[2025-11-30 06:34:47] 2025-11-30 05:34:14,858 | INFO     | . get job = 0 s
[2025-11-30 06:34:47] 2025-11-30 05:34:14,858 | INFO     | . initial setup = 1 s
[2025-11-30 06:34:47] 2025-11-30 05:34:14,858 | INFO     | . payload setup = 4 s
[2025-11-30 06:34:47] 2025-11-30 05:34:14,859 | INFO     | . stage-in = 0 s
[2025-11-30 06:34:47] 2025-11-30 05:34:14,859 | INFO     | . payload execution = 13911 s
[2025-11-30 06:34:47] 2025-11-30 05:34:14,859 | INFO     | . stage-out = 1 s
[2025-11-30 06:34:47] 2025-11-30 05:34:14,859 | INFO     | . log creation = 0 s
[2025-11-30 06:34:47] 2025-11-30 05:34:14,859 | INFO     | ..............................
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | 
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | job summary report
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | --------------------------------------------------
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | PanDA job id: 6899134357
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | task id: 47531058
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | errors: (none)
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | pilot state: finished 
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | transexitcode: 0
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | exeerrorcode: 0
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | exeerrordiag: 
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | exitcode: 0
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | exitmsg: OK
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | cpuconsumptiontime: 104012 s
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | nevents: 1000
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | neventsw: 0
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | pid: 10307
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | pgrp: 10307
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | corecount: 8
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | event service: False
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | sizes: {0: 2284573, 2: 2284835, 11: 2284863, 13919: 2335444, 13920: 2335443, 13921: 2344523, 13923: 2344707, 13925: 2344953}
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | --------------------------------------------------
[2025-11-30 06:34:47] 2025-11-30 05:34:15,056 | INFO     | 
[2025-11-30 06:34:47] 2025-11-30 05:34:15,057 | INFO     | executing command: ls -lF /tmp/job_10935342/atlas/pilot/slots/0
[2025-11-30 06:34:47] 2025-11-30 05:34:15,066 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,066 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,066 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,066 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,066 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,066 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,066 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,066 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | job 6899134357 has completed (purged errors)
[2025-11-30 06:34:47] 2025-11-30 05:34:15,067 | INFO     | overall cleanup function is called
[2025-11-30 06:34:47] 2025-11-30 05:34:15,516 | WARNING  | process 10307 can no longer be monitored (due to stat problems) - aborting
[2025-11-30 06:34:47] 2025-11-30 05:34:15,600 | INFO     | using path: /tmp/job_10935342/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 06:34:47] 2025-11-30 05:34:15,706 | INFO     | number of running child processes to parent process 10307: 1
[2025-11-30 06:34:47] 2025-11-30 05:34:15,706 | INFO     | maximum number of monitored processes: 16
[2025-11-30 06:34:47] 2025-11-30 05:34:15,706 | INFO     | aborting job monitoring since job object (job id=6899134357) has expired
[2025-11-30 06:34:47] 2025-11-30 05:34:16,074 | INFO     | --- collectZombieJob: --- 10, [10307]
[2025-11-30 06:34:47] 2025-11-30 05:34:16,075 | INFO     | zombie collector waiting for pid 10307
[2025-11-30 06:34:47] 2025-11-30 05:34:16,075 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 06:34:47] 2025-11-30 05:34:16,075 | INFO     | collected zombie processes
[2025-11-30 06:34:47] 2025-11-30 05:34:16,075 | INFO     | will attempt to kill all subprocesses of pid=10307
[2025-11-30 06:34:47] 2025-11-30 05:34:16,180 | INFO     | process IDs to be killed: [10307] (in reverse order)
[2025-11-30 06:34:47] 2025-11-30 05:34:16,221 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 06:34:47] 2025-11-30 05:34:16,221 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 06:34:47] 2025-11-30 05:34:16,225 | INFO     | did not find any defunct processes belonging to 10307
[2025-11-30 06:34:47] 2025-11-30 05:34:16,228 | INFO     | did not find any defunct processes belonging to 10307
[2025-11-30 06:34:47] 2025-11-30 05:34:16,228 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 06:34:47] 2025-11-30 05:34:16,228 | INFO     | ready for new job
[2025-11-30 06:34:47] 2025-11-30 05:34:16,228 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 06:34:47] 2025-11-30 05:34:16,229 | INFO     | ***************************************
[2025-11-30 06:34:47] 2025-11-30 05:34:16,229 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 06:34:47] 2025-11-30 05:34:16,229 | INFO     | ***************************************
[2025-11-30 06:34:47] 2025-11-30 05:34:16,229 | INFO     | 
[2025-11-30 06:34:47] 2025-11-30 05:34:16,244 | INFO     | architecture information:
[2025-11-30 06:34:47] 2025-11-30 05:34:16,244 | INFO     | executing command: cat /etc/os-release
[2025-11-30 06:34:47] 2025-11-30 05:34:16,250 | INFO     | cat /etc/os-release:
[2025-11-30 06:34:47] NAME="CentOS Linux"
[2025-11-30 06:34:47] VERSION="7 (Core)"
[2025-11-30 06:34:47] ID="centos"
[2025-11-30 06:34:47] ID_LIKE="rhel fedora"
[2025-11-30 06:34:47] VERSION_ID="7"
[2025-11-30 06:34:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 06:34:47] ANSI_COLOR="0;31"
[2025-11-30 06:34:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 06:34:47] HOME_URL="https://www.centos.org/"
[2025-11-30 06:34:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 06:34:47] 
[2025-11-30 06:34:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 06:34:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 06:34:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 06:34:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 06:34:47] 
[2025-11-30 06:34:47] 2025-11-30 05:34:16,250 | INFO     | ***************************************
[2025-11-30 06:34:47] 2025-11-30 05:34:16,753 | INFO     | executing command: df -mP /tmp/job_10935342/atlas/pilot/slots/0
[2025-11-30 06:34:47] 2025-11-30 05:34:16,759 | INFO     | sufficient remaining disk space (220142239744 B)
[2025-11-30 06:34:47] 2025-11-30 05:34:16,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 06:34:47] 2025-11-30 05:34:16,759 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 06:34:47] 2025-11-30 05:34:16,759 | INFO     | update_server=False
[2025-11-30 06:34:47] 2025-11-30 05:34:16,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 06:34:47] 2025-11-30 05:34:16,759 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 06:34:47] 2025-11-30 05:34:16,759 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 06:34:47] 2025-11-30 05:34:16,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 06:34:47] 2025-11-30 05:34:16,759 | INFO     | aborting loop
[2025-11-30 06:34:47] 2025-11-30 05:34:17,039 | INFO     | all data control threads have been joined
[2025-11-30 06:34:47] 2025-11-30 05:34:17,646 | INFO     | all payload control threads have been joined
[2025-11-30 06:34:47] 2025-11-30 05:34:17,764 | INFO     | [job] retrieve thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:17,764 | INFO     | [job] queue monitor thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:17,764 | INFO     | [job] job monitor thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:17,793 | INFO     | [job] validate thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:17,855 | INFO     | all job control threads have been joined
[2025-11-30 06:34:47] 2025-11-30 05:34:17,867 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:17,891 | INFO     | [data] copytool_in thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:18,044 | INFO     | [data] control thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:18,414 | INFO     | [payload] validate_post thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:18,452 | INFO     | [payload] failed_post thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:18,651 | INFO     | [payload] control thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:18,704 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:18,764 | INFO     | [data] copytool_out thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:18,793 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:18,860 | INFO     | [job] control thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:19,250 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 06:34:47] 2025-11-30 05:34:20,130 | INFO     | [monitor] cgroup control has ended
[2025-11-30 06:34:47] 2025-11-30 05:34:23,255 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:27,068 | INFO     | job.realtimelogging is not enabled
[2025-11-30 06:34:47] 2025-11-30 05:34:28,074 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 06:34:47] 2025-11-30 05:34:28,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-11-30 06:34:47] 2025-11-30 05:34:33,164 | INFO     | all workflow threads have been joined
[2025-11-30 06:34:47] 2025-11-30 05:34:33,164 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 06:34:47] 2025-11-30 05:34:33,164 | INFO     | traces error code: 0
[2025-11-30 06:34:47] 2025-11-30 05:34:33,164 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 06:34:47] 2025-11-30 05:34:47,499 | INFO     | PID=32703 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 06:34:47] 2025-11-30 05:34:47,499 | INFO     | .. there are 5 such processes running
[2025-11-30 06:34:47] 2025-11-30 05:34:47,499 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 06:34:47] 2025-11-30 05:34:47,499 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 06:34:47] 2025-11-30 05:34:47,499 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 06:34:47] 2025-11-30 05:34:47,499 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 06:34:47] 2025-11-30 05:34:47,499 | CRITICAL | thread 'MainThread' is not alive
[2025-11-30 06:34:47] 2025-11-30 05:34:47,499 | INFO     | [monitor] control thread has ended
[2025-11-30 06:34:47] 2025-11-30 05:34:47,553 [wrapper] ==== pilot stdout END ====
[2025-11-30 06:34:47] 2025-11-30 05:34:47,554 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 06:34:47] 2025-11-30 05:34:47,556 [wrapper] pilotpid: 32703
[2025-11-30 06:34:47] 2025-11-30 05:34:47,557 [wrapper] Pilot exit status: 0
[2025-11-30 06:34:47] 2025-11-30 05:34:47,561 [wrapper] pandaids: 6899134357
[2025-11-30 06:34:47] 2025-11-30 05:34:47,585 [wrapper] cleanup supervisor_pilot 27741 32704
[2025-11-30 06:34:47] 2025-11-30 05:34:47,586 [wrapper] Test setup, not cleaning
[2025-11-30 06:34:47] 2025-11-30 05:34:47,587 [wrapper] apfmon messages muted
[2025-11-30 06:34:47] 2025-11-30 05:34:47,588 [wrapper] ==== wrapper stdout END ====
[2025-11-30 06:34:47] 2025-11-30 05:34:47,589 [wrapper] ==== wrapper stderr END ====
[2025-11-30 06:34:47]  *** Error codes and diagnostics ***
[2025-11-30 06:34:47]     "exeErrorCode": 0,
[2025-11-30 06:34:47]     "exeErrorDiag": "",
[2025-11-30 06:34:47]     "pilotErrorCode": 0,
[2025-11-30 06:34:47]     "pilotErrorDiag": "",
[2025-11-30 06:34:47]  *** Listing of results directory ***
[2025-11-30 06:34:47] total 1053812
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user    576529 Nov 28 23:41 pilot3.tar.gz
[2025-11-30 06:34:47] -rwx------ 1 mf493845 unix-user     36292 Nov 28 23:43 runpilot2-wrapper.sh
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user      5112 Nov 28 23:43 queuedata.json
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user       100 Nov 30 01:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 06:34:47] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 30 01:05 run_atlas
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user       105 Nov 30 01:05 job.xml
[2025-11-30 06:34:47] -rw-r--r-- 2 mf493845 unix-user 378947593 Nov 30 02:41 EVNT.47531050._000515.pool.root.1
[2025-11-30 06:34:47] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 30 02:41 start_atlas.sh
[2025-11-30 06:34:47] drwxrwx--x 2 mf493845 unix-user       100 Nov 30 02:41 shared
[2025-11-30 06:34:47] -rw-r--r-- 2 mf493845 unix-user    590119 Nov 30 02:41 input.tar.gz
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user      6392 Nov 30 02:41 init_data.xml
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user         0 Nov 30 02:41 boinc_setup_complete
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user      8192 Nov 30 02:41 boinc_mmap_file
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user         0 Nov 30 02:41 boinc_lockfile
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user      2877 Nov 30 02:41 pandaJob.out
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user    991828 Nov 30 02:41 agis_schedconf.cvmfs.json
[2025-11-30 06:34:47] drwx------ 5 mf493845 unix-user       440 Nov 30 02:41 pilot3
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user 688954746 Nov 30 06:33 HITS.47531058._001301.pool.root.1
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user      1027 Nov 30 06:34 memory_monitor_summary.json
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user   1516240 Nov 30 06:34 agis_ddmendpoints.agis.ALL.json
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user   1623767 Nov 30 06:34 log.47531058._001301.job.log.tgz.1
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user     27954 Nov 30 06:34 heartbeat.json
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user        95 Nov 30 06:34 pilot_heartbeat.json
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user       890 Nov 30 06:34 pilotlog.txt
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user   2018168 Nov 30 06:34 log.47531058._001301.job.log.1
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user       353 Nov 30 06:34 output.list
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user       620 Nov 30 06:34 runtime_log
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user   3676160 Nov 30 06:34 result.tar.gz
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user       650 Nov 30 06:34 vlHODmUMMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeSLKDm2qNWBn.diag
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user      9221 Nov 30 06:34 runtime_log.err
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user     21666 Nov 30 06:34 stderr.txt
[2025-11-30 06:34:47] HITS file was successfully produced:
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user 688954746 Nov 30 06:33 shared/HITS.pool.root.1
[2025-11-30 06:34:47]  *** Contents of shared directory: ***
[2025-11-30 06:34:47] total 1047064
[2025-11-30 06:34:47] -rw-r--r-- 2 mf493845 unix-user 378947593 Nov 30 02:41 ATLAS.root_0
[2025-11-30 06:34:47] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 30 02:41 start_atlas.sh
[2025-11-30 06:34:47] -rw-r--r-- 2 mf493845 unix-user    590119 Nov 30 02:41 input.tar.gz
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user 688954746 Nov 30 06:33 HITS.pool.root.1
[2025-11-30 06:34:47] -rw------- 1 mf493845 unix-user   3676160 Nov 30 06:34 result.tar.gz
06:34:49 (27929): run_atlas exited; CPU time 104165.721912
06:34:49 (27929): called boinc_finish(0)

</stderr_txt>
]]>

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