Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:32:21 (11238): wrapper (7.7.26015): starting
02:32:21 (11238): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 02:32:21] Arguments: --nthreads 8
[2025-11-30 02:32:21] Threads: 8
[2025-11-30 02:32:21] Checking for CVMFS
[2025-11-30 02:32:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 02:32:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 02:32:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 02:32:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 02:32:22] 2.11.0.0 11065 70773 67772 153463 1 74 3933578 4096000 210 130560 2 4399533 99.502 4346964 481 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-30 02:32:22] CVMFS is ok
[2025-11-30 02:32:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 02:32:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 02:32:22] Further information can be found at the LHC@home message board.
[2025-11-30 02:32:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 02:32:22] Checking for apptainer binary...
[2025-11-30 02:32:22] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-30 02:32:22] apptainer is not installed, using version from CVMFS
[2025-11-30 02:32:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 02:32:22] WARNING: Environment variable TMPDIR already has value [/tmp/job_10935222/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node384
[2025-11-30 02:32:22] apptainer works
[2025-11-30 02:32:22] Set ATHENA_PROC_NUMBER=8
[2025-11-30 02:32:22] Set ATHENA_CORE_NUMBER=8
[2025-11-30 02:32:22] Starting ATLAS job with PandaID=6900275183
[2025-11-30 02:32:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10935222/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 06:37:57]  *** The last 200 lines of the pilot log: ***
[2025-11-30 06:37:57] 2025-11-30 05:37:13,491 | INFO     | mean y: 3828133.601659751
[2025-11-30 06:37:57] 2025-11-30 05:37:13,491 | INFO     | intersect: -254283179408.20535
[2025-11-30 06:37:57] 2025-11-30 05:37:13,491 | INFO     | chi2: 5.878610365484455
[2025-11-30 06:37:57] 2025-11-30 05:37:13,491 | INFO     | sum of square deviations: 4075702192.96186
[2025-11-30 06:37:57] 2025-11-30 05:37:13,492 | INFO     | sum of deviations: 670764161134.9238
[2025-11-30 06:37:57] 2025-11-30 05:37:13,492 | INFO     | mean x: 1764473535.5127118
[2025-11-30 06:37:57] 2025-11-30 05:37:13,492 | INFO     | mean y: 3853815.025423729
[2025-11-30 06:37:57] 2025-11-30 05:37:13,492 | INFO     | intersect: -290386747573.0659
[2025-11-30 06:37:57] 2025-11-30 05:37:13,492 | INFO     | chi2: 4.228581315867288
[2025-11-30 06:37:57] 2025-11-30 05:37:13,492 | INFO     | current chi2=4.228581315867288 (change=28.068351991911417 %)
[2025-11-30 06:37:57] 2025-11-30 05:37:13,493 | INFO     | sum of square deviations: 3822098352.9610333
[2025-11-30 06:37:57] 2025-11-30 05:37:13,493 | INFO     | sum of deviations: 619635749478.3896
[2025-11-30 06:37:57] 2025-11-30 05:37:13,493 | INFO     | mean x: 1764473383.012987
[2025-11-30 06:37:57] 2025-11-30 05:37:13,493 | INFO     | mean y: 3823068.8701298703
[2025-11-30 06:37:57] 2025-11-30 05:37:13,493 | INFO     | intersect: -286051292773.6887
[2025-11-30 06:37:57] 2025-11-30 05:37:13,494 | INFO     | chi2: 4.1901419964625966
[2025-11-30 06:37:57] 2025-11-30 05:37:13,494 | INFO     | current chi2=4.1901419964625966 (change=0.9090358333763652 %)
[2025-11-30 06:37:57] 2025-11-30 05:37:13,494 | INFO     | right removable region: 230
[2025-11-30 06:37:57] 2025-11-30 05:37:13,494 | INFO     | sum of square deviations: 4075700362.96186
[2025-11-30 06:37:57] 2025-11-30 05:37:13,495 | INFO     | sum of deviations: 503855613555.00006
[2025-11-30 06:37:57] 2025-11-30 05:37:13,495 | INFO     | mean x: 1764473840.5127118
[2025-11-30 06:37:57] 2025-11-30 05:37:13,495 | INFO     | mean y: 3898183.0
[2025-11-30 06:37:57] 2025-11-30 05:37:13,495 | INFO     | intersect: -218127949190.3932
[2025-11-30 06:37:57] 2025-11-30 05:37:13,495 | INFO     | chi2: 2.3172760871811717
[2025-11-30 06:37:57] 2025-11-30 05:37:13,495 | INFO     | current chi2=2.3172760871811717 (change=60.58122680171532 %)
[2025-11-30 06:37:57] 2025-11-30 05:37:13,495 | INFO     | sum of square deviations: 3822109087.982665
[2025-11-30 06:37:57] 2025-11-30 05:37:13,496 | INFO     | sum of deviations: 462393809687.5541
[2025-11-30 06:37:57] 2025-11-30 05:37:13,496 | INFO     | mean x: 1764473993.008658
[2025-11-30 06:37:57] 2025-11-30 05:37:13,496 | INFO     | mean y: 3923010.7229437227
[2025-11-30 06:37:57] 2025-11-30 05:37:13,496 | INFO     | intersect: -213459856525.85538
[2025-11-30 06:37:57] 2025-11-30 05:37:13,496 | INFO     | chi2: 2.139797311347837
[2025-11-30 06:37:57] 2025-11-30 05:37:13,496 | INFO     | current chi2=2.139797311347837 (change=7.658939597880504 %)
[2025-11-30 06:37:57] 2025-11-30 05:37:13,496 | INFO     | left removable region: 20
[2025-11-30 06:37:57] 2025-11-30 05:37:13,496 | INFO     | sum of square deviations: 2871616632.5
[2025-11-30 06:37:57] 2025-11-30 05:37:13,497 | INFO     | sum of deviations: 406142497774.00006
[2025-11-30 06:37:57] 2025-11-30 05:37:13,497 | INFO     | mean x: 1764473962.5
[2025-11-30 06:37:57] 2025-11-30 05:37:13,497 | INFO     | mean y: 3950354.2285714285
[2025-11-30 06:37:57] 2025-11-30 05:37:13,497 | INFO     | intersect: -249551597651.86038
[2025-11-30 06:37:57] 2025-11-30 05:37:13,497 | INFO     | chi2: 0.3015923717874734
[2025-11-30 06:37:57] 2025-11-30 05:37:13,497 | INFO     | current memory leak: 141.43 B/s (using 210 data points, chi2=0.30)
[2025-11-30 06:37:57] 2025-11-30 05:37:13,498 | INFO     | could have reported an average CPU frequency of 2813 MHz (11 samples)
[2025-11-30 06:37:57] 2025-11-30 05:37:13,498 | INFO     | ..............................
[2025-11-30 06:37:57] 2025-11-30 05:37:13,498 | INFO     | . Timing measurements:
[2025-11-30 06:37:57] 2025-11-30 05:37:13,498 | INFO     | . get job = 0 s
[2025-11-30 06:37:57] 2025-11-30 05:37:13,498 | INFO     | . initial setup = 1 s
[2025-11-30 06:37:57] 2025-11-30 05:37:13,498 | INFO     | . payload setup = 4 s
[2025-11-30 06:37:57] 2025-11-30 05:37:13,498 | INFO     | . stage-in = 0 s
[2025-11-30 06:37:57] 2025-11-30 05:37:13,498 | INFO     | . payload execution = 14661 s
[2025-11-30 06:37:57] 2025-11-30 05:37:13,498 | INFO     | . stage-out = 1 s
[2025-11-30 06:37:57] 2025-11-30 05:37:13,498 | INFO     | . log creation = 0 s
[2025-11-30 06:37:57] 2025-11-30 05:37:13,498 | INFO     | ..............................
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | 
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | job summary report
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | --------------------------------------------------
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | PanDA job id: 6900275183
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | task id: 47530783
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | errors: (none)
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | pilot state: finished 
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | transexitcode: 0
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | exeerrorcode: 0
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | exeerrordiag: 
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | exitcode: 0
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | exitmsg: OK
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | cpuconsumptiontime: 106874 s
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | nevents: 1000
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | neventsw: 0
[2025-11-30 06:37:57] 2025-11-30 05:37:13,861 | INFO     | pid: 10034
[2025-11-30 06:37:57] 2025-11-30 05:37:13,862 | INFO     | pgrp: 10034
[2025-11-30 06:37:57] 2025-11-30 05:37:13,862 | INFO     | corecount: 8
[2025-11-30 06:37:57] 2025-11-30 05:37:13,862 | INFO     | event service: False
[2025-11-30 06:37:57] 2025-11-30 05:37:13,862 | INFO     | sizes: {0: 2284293, 1: 2284603, 3: 2284865, 11: 2284893, 14669: 2335587, 14671: 2344795, 14674: 2344985}
[2025-11-30 06:37:57] 2025-11-30 05:37:13,862 | INFO     | --------------------------------------------------
[2025-11-30 06:37:57] 2025-11-30 05:37:13,862 | INFO     | 
[2025-11-30 06:37:57] 2025-11-30 05:37:13,862 | INFO     | executing command: ls -lF /tmp/job_10935222/atlas/pilot/slots/0
[2025-11-30 06:37:57] 2025-11-30 05:37:13,872 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,872 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,872 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,872 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,872 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,872 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,872 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,872 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,872 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,872 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,872 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,873 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,873 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,873 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,873 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,873 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,873 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,873 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 06:37:57] 2025-11-30 05:37:13,873 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,873 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 06:37:57] 2025-11-30 05:37:13,873 | INFO     | job 6900275183 has completed (purged errors)
[2025-11-30 06:37:57] 2025-11-30 05:37:13,873 | INFO     | overall cleanup function is called
[2025-11-30 06:37:57] 2025-11-30 05:37:14,881 | INFO     | --- collectZombieJob: --- 10, [10034]
[2025-11-30 06:37:57] 2025-11-30 05:37:14,881 | INFO     | zombie collector waiting for pid 10034
[2025-11-30 06:37:57] 2025-11-30 05:37:14,881 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 06:37:57] 2025-11-30 05:37:14,881 | INFO     | collected zombie processes
[2025-11-30 06:37:57] 2025-11-30 05:37:14,881 | INFO     | will attempt to kill all subprocesses of pid=10034
[2025-11-30 06:37:57] 2025-11-30 05:37:14,982 | INFO     | process IDs to be killed: [10034] (in reverse order)
[2025-11-30 06:37:57] 2025-11-30 05:37:15,024 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 06:37:57] 2025-11-30 05:37:15,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 06:37:57] 2025-11-30 05:37:15,029 | INFO     | did not find any defunct processes belonging to 10034
[2025-11-30 06:37:57] 2025-11-30 05:37:15,032 | INFO     | did not find any defunct processes belonging to 10034
[2025-11-30 06:37:57] 2025-11-30 05:37:15,033 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 06:37:57] 2025-11-30 05:37:15,033 | INFO     | ready for new job
[2025-11-30 06:37:57] 2025-11-30 05:37:15,033 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 06:37:57] 2025-11-30 05:37:15,034 | INFO     | ***************************************
[2025-11-30 06:37:57] 2025-11-30 05:37:15,034 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 06:37:57] 2025-11-30 05:37:15,034 | INFO     | ***************************************
[2025-11-30 06:37:57] 2025-11-30 05:37:15,034 | INFO     | 
[2025-11-30 06:37:57] 2025-11-30 05:37:15,049 | INFO     | architecture information:
[2025-11-30 06:37:57] 2025-11-30 05:37:15,049 | INFO     | executing command: cat /etc/os-release
[2025-11-30 06:37:57] 2025-11-30 05:37:15,058 | INFO     | cat /etc/os-release:
[2025-11-30 06:37:57] NAME="CentOS Linux"
[2025-11-30 06:37:57] VERSION="7 (Core)"
[2025-11-30 06:37:57] ID="centos"
[2025-11-30 06:37:57] ID_LIKE="rhel fedora"
[2025-11-30 06:37:57] VERSION_ID="7"
[2025-11-30 06:37:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 06:37:57] ANSI_COLOR="0;31"
[2025-11-30 06:37:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 06:37:57] HOME_URL="https://www.centos.org/"
[2025-11-30 06:37:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 06:37:57] 
[2025-11-30 06:37:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 06:37:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 06:37:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 06:37:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 06:37:57] 
[2025-11-30 06:37:57] 2025-11-30 05:37:15,059 | INFO     | ***************************************
[2025-11-30 06:37:57] 2025-11-30 05:37:15,561 | INFO     | executing command: df -mP /tmp/job_10935222/atlas/pilot/slots/0
[2025-11-30 06:37:57] 2025-11-30 05:37:15,571 | INFO     | sufficient remaining disk space (221537894400 B)
[2025-11-30 06:37:57] 2025-11-30 05:37:15,571 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 06:37:57] 2025-11-30 05:37:15,572 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 06:37:57] 2025-11-30 05:37:15,572 | INFO     | update_server=False
[2025-11-30 06:37:57] 2025-11-30 05:37:15,572 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 06:37:57] 2025-11-30 05:37:15,701 | WARNING  | process 10034 can no longer be monitored (due to stat problems) - aborting
[2025-11-30 06:37:57] 2025-11-30 05:37:15,781 | INFO     | using path: /tmp/job_10935222/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 06:37:57] 2025-11-30 05:37:15,782 | INFO     | using path: /tmp/job_10935222/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 06:37:57] 2025-11-30 05:37:15,782 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-11-30 06:37:57] 2025-11-30 05:37:15,782 | WARNING  | maxPSS not found in memory monitor output
[2025-11-30 06:37:57] 2025-11-30 05:37:15,782 | INFO     | skipping file size check of payload stdout file (/tmp/job_10935222/atlas/pilot/slots/0/PanDA_Pilot-6900275183/payload.stdout) since it has not been created yet
[2025-11-30 06:37:57] 2025-11-30 05:37:15,782 | INFO     | executing command: df -mP /tmp/job_10935222/atlas/pilot/slots/0
[2025-11-30 06:37:57] 2025-11-30 05:37:15,790 | INFO     | sufficient remaining disk space (221537894400 B)
[2025-11-30 06:37:57] 2025-11-30 05:37:15,791 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-11-30 06:37:57] 2025-11-30 05:37:15,791 | INFO     | output file size check: skipping output file /tmp/job_10935222/atlas/pilot/slots/0/PanDA_Pilot-6900275183/HITS.47530783._000508.pool.root.1 since it does not exist
[2025-11-30 06:37:57] 2025-11-30 05:37:15,893 | INFO     | number of running child processes to parent process 10034: 1
[2025-11-30 06:37:57] 2025-11-30 05:37:15,893 | INFO     | maximum number of monitored processes: 16
[2025-11-30 06:37:57] 2025-11-30 05:37:15,893 | INFO     | aborting job monitoring since job object (job id=6900275183) has expired
[2025-11-30 06:37:57] 2025-11-30 05:37:15,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 06:37:57] 2025-11-30 05:37:15,894 | INFO     | will abort loop
[2025-11-30 06:37:57] 2025-11-30 05:37:15,908 | INFO     | all data control threads have been joined
[2025-11-30 06:37:57] 2025-11-30 05:37:16,019 | INFO     | all payload control threads have been joined
[2025-11-30 06:37:57] 2025-11-30 05:37:16,058 | INFO     | all job control threads have been joined
[2025-11-30 06:37:57] 2025-11-30 05:37:16,216 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 06:37:57] 2025-11-30 05:37:16,577 | INFO     | [job] retrieve thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:16,586 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:16,609 | INFO     | [payload] validate_post thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:16,765 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 06:37:57] 2025-11-30 05:37:16,899 | INFO     | [job] job monitor thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:16,913 | INFO     | [data] control thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:17,024 | INFO     | [payload] control thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:17,063 | INFO     | [job] control thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:17,095 | INFO     | [data] copytool_in thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:17,386 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:17,387 | INFO     | [payload] failed_post thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:17,811 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:17,852 | INFO     | [job] validate thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:18,064 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:18,221 | INFO     | [data] copytool_out thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:18,558 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 06:37:57] 2025-11-30 05:37:19,563 | INFO     | [job] queue monitor thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:20,770 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 06:37:57] 2025-11-30 05:37:45,082 | INFO     | PID=18683 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 06:37:57] 2025-11-30 05:37:45,082 | INFO     | .. there are 4 such processes running
[2025-11-30 06:37:57] 2025-11-30 05:37:45,082 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 06:37:57] 2025-11-30 05:37:45,082 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 06:37:57] 2025-11-30 05:37:45,082 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 06:37:57] 2025-11-30 05:37:51,015 | INFO     | [monitor] cgroup control has ended
[2025-11-30 06:37:57] 2025-11-30 05:37:52,506 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067122944)>']
[2025-11-30 06:37:57] 2025-11-30 05:37:53,123 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 06:37:57] 2025-11-30 05:37:53,123 | INFO     | [monitor] control thread has ended
[2025-11-30 06:37:57] 2025-11-30 05:37:57,532 | INFO     | all workflow threads have been joined
[2025-11-30 06:37:57] 2025-11-30 05:37:57,532 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 06:37:57] 2025-11-30 05:37:57,532 | INFO     | traces error code: 0
[2025-11-30 06:37:57] 2025-11-30 05:37:57,532 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 06:37:57] 2025-11-30 05:37:57,595 [wrapper] ==== pilot stdout END ====
[2025-11-30 06:37:57] 2025-11-30 05:37:57,596 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 06:37:57] 2025-11-30 05:37:57,598 [wrapper] pilotpid: 18683
[2025-11-30 06:37:57] 2025-11-30 05:37:57,599 [wrapper] Pilot exit status: 0
[2025-11-30 06:37:57] 2025-11-30 05:37:57,605 [wrapper] pandaids: 6900275183
[2025-11-30 06:37:57] 2025-11-30 05:37:57,629 [wrapper] cleanup supervisor_pilot 24060 18684
[2025-11-30 06:37:57] 2025-11-30 05:37:57,631 [wrapper] Test setup, not cleaning
[2025-11-30 06:37:57] 2025-11-30 05:37:57,633 [wrapper] apfmon messages muted
[2025-11-30 06:37:57] 2025-11-30 05:37:57,634 [wrapper] ==== wrapper stdout END ====
[2025-11-30 06:37:57] 2025-11-30 05:37:57,635 [wrapper] ==== wrapper stderr END ====
[2025-11-30 06:37:57]  *** Error codes and diagnostics ***
[2025-11-30 06:37:57]     "exeErrorCode": 0,
[2025-11-30 06:37:57]     "exeErrorDiag": "",
[2025-11-30 06:37:57]     "pilotErrorCode": 0,
[2025-11-30 06:37:57]     "pilotErrorDiag": "",
[2025-11-30 06:37:57]  *** Listing of results directory ***
[2025-11-30 06:37:57] total 1052076
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user    576529 Nov 28 23:41 pilot3.tar.gz
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user      5112 Nov 28 23:41 queuedata.json
[2025-11-30 06:37:57] -rwx------ 1 mf493845 unix-user     36292 Nov 28 23:43 runpilot2-wrapper.sh
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user       100 Nov 30 00:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 06:37:57] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 30 00:56 run_atlas
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user       105 Nov 30 00:56 job.xml
[2025-11-30 06:37:57] -rw-r--r-- 2 mf493845 unix-user 377044392 Nov 30 02:32 EVNT.47530775._000051.pool.root.1
[2025-11-30 06:37:57] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 30 02:32 start_atlas.sh
[2025-11-30 06:37:57] drwxrwx--x 2 mf493845 unix-user       100 Nov 30 02:32 shared
[2025-11-30 06:37:57] -rw-r--r-- 2 mf493845 unix-user    590118 Nov 30 02:32 input.tar.gz
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user      6391 Nov 30 02:32 init_data.xml
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user         0 Nov 30 02:32 boinc_setup_complete
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user      8192 Nov 30 02:32 boinc_mmap_file
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user         0 Nov 30 02:32 boinc_lockfile
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user      2878 Nov 30 02:32 pandaJob.out
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user    991828 Nov 30 02:32 agis_schedconf.cvmfs.json
[2025-11-30 06:37:57] drwx------ 5 mf493845 unix-user       440 Nov 30 02:32 pilot3
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user 688861226 Nov 30 06:36 HITS.47530783._000508.pool.root.1
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user        95 Nov 30 06:36 pilot_heartbeat.json
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user      1024 Nov 30 06:37 memory_monitor_summary.json
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user   1516240 Nov 30 06:37 agis_ddmendpoints.agis.ALL.json
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user   1624949 Nov 30 06:37 log.47530783._000508.job.log.tgz.1
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user     27816 Nov 30 06:37 heartbeat.json
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user      6393 Nov 30 06:37 pilotlog.txt
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user   2119949 Nov 30 06:37 log.47530783._000508.job.log.1
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user       353 Nov 30 06:37 output.list
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user       620 Nov 30 06:37 runtime_log
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user   3788800 Nov 30 06:37 result.tar.gz
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user      9221 Nov 30 06:37 runtime_log.err
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user       650 Nov 30 06:37 GtpMDmSMMj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCiOKDmeSQlxn.diag
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user     22139 Nov 30 06:37 stderr.txt
[2025-11-30 06:37:57] HITS file was successfully produced:
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user 688861226 Nov 30 06:36 shared/HITS.pool.root.1
[2025-11-30 06:37:57]  *** Contents of shared directory: ***
[2025-11-30 06:37:57] total 1045224
[2025-11-30 06:37:57] -rw-r--r-- 2 mf493845 unix-user 377044392 Nov 30 02:32 ATLAS.root_0
[2025-11-30 06:37:57] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 30 02:32 start_atlas.sh
[2025-11-30 06:37:57] -rw-r--r-- 2 mf493845 unix-user    590118 Nov 30 02:32 input.tar.gz
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user 688861226 Nov 30 06:36 HITS.pool.root.1
[2025-11-30 06:37:57] -rw------- 1 mf493845 unix-user   3788800 Nov 30 06:37 result.tar.gz
06:37:59 (11238): run_atlas exited; CPU time 107008.509892
06:37:59 (11238): called boinc_finish(0)

</stderr_txt>
]]>

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