Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:52:14 (8924): wrapper (7.7.26015): starting
16:52:14 (8924): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 16:52:14] Arguments: --nthreads 12
[2025-11-29 16:52:14] Threads: 12
[2025-11-29 16:52:14] Checking for CVMFS
[2025-11-29 16:52:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 16:52:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 16:52:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 16:52:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 16:52:14] 2.11.2.0 10903 11030 90720 153456 1 82 15518531 20275200 1 130560 0 4810158 99.840 1076042 41576 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 16:52:14] CVMFS is ok
[2025-11-29 16:52:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 16:52:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 16:52:14] Further information can be found at the LHC@home message board.
[2025-11-29 16:52:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 16:52:14] Checking for apptainer binary...
[2025-11-29 16:52:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 16:52:14] Running /usr/bin/apptainer --version
[2025-11-29 16:52:14] apptainer version 1.3.2-1.el7
[2025-11-29 16:52:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 16:52:16] c-205-22.aglt2.org
[2025-11-29 16:52:16] apptainer works
[2025-11-29 16:52:16] Set ATHENA_PROC_NUMBER=12
[2025-11-29 16:52:16] Set ATHENA_CORE_NUMBER=12
[2025-11-29 16:52:16] Starting ATLAS job with PandaID=6900935625
[2025-11-29 16:52:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:10:58 (12805): wrapper (7.7.26015): starting
00:10:58 (12805): wrapper: running run_atlas (--nthreads 12)
[2025-11-30 00:10:58] Arguments: --nthreads 12
[2025-11-30 00:10:58] Threads: 12
[2025-11-30 00:10:58] This job has been restarted, cleaning up previous attempt
[2025-11-30 00:10:58] Checking for CVMFS
[2025-11-30 00:10:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 00:10:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 00:10:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 00:10:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 00:10:59] 2.11.2.0 10903 11469 94424 153469 2 1 16080120 20275200 1 130560 0 4980434 99.845 1098391 41657 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 00:10:59] CVMFS is ok
[2025-11-30 00:10:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 00:10:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 00:10:59] Further information can be found at the LHC@home message board.
[2025-11-30 00:10:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 00:10:59] Checking for apptainer binary...
[2025-11-30 00:10:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 00:10:59] Running /usr/bin/apptainer --version
[2025-11-30 00:10:59] apptainer version 1.3.2-1.el7
[2025-11-30 00:10:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 00:11:00] c-205-22.aglt2.org
[2025-11-30 00:11:00] apptainer works
[2025-11-30 00:11:00] Set ATHENA_PROC_NUMBER=12
[2025-11-30 00:11:00] Set ATHENA_CORE_NUMBER=12
[2025-11-30 00:11:00] Starting ATLAS job with PandaID=6900935625
[2025-11-30 00:11:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 07:32:27]  *** The last 200 lines of the pilot log: ***
[2025-11-30 07:32:27] 2025-11-30 12:31:54,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 07:32:27] 2025-11-30 12:31:55,231 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-30 07:32:27] 2025-11-30 12:31:55,235 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1806.75
[2025-11-30 07:32:27] 2025-11-30 12:31:55,237 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6900935625/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 07:32:27] 2025-11-30 12:31:55,238 | INFO     | extracted standard info from prmon json
[2025-11-30 07:32:27] 2025-11-30 12:31:55,238 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 07:32:27] 2025-11-30 12:31:55,238 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 07:32:27] 2025-11-30 12:31:55,244 | INFO     | fitting pss+swap vs Time
[2025-11-30 07:32:27] 2025-11-30 12:31:55,245 | INFO     | sum of square deviations: 25173379915.441216
[2025-11-30 07:32:27] 2025-11-30 12:31:55,249 | INFO     | sum of deviations: 413207072604.1549
[2025-11-30 07:32:27] 2025-11-30 12:31:55,249 | INFO     | mean x: 1764492682.2332563
[2025-11-30 07:32:27] 2025-11-30 12:31:55,250 | INFO     | mean y: 3461284.6420323327
[2025-11-30 07:32:27] 2025-11-30 12:31:55,250 | INFO     | intersect: -28959707678.21268
[2025-11-30 07:32:27] 2025-11-30 12:31:55,250 | INFO     | chi2: 5.49386847073793
[2025-11-30 07:32:27] 2025-11-30 12:31:55,251 | INFO     | sum of square deviations: 24311385255.16581
[2025-11-30 07:32:27] 2025-11-30 12:31:55,255 | INFO     | sum of deviations: 561765543829.2266
[2025-11-30 07:32:27] 2025-11-30 12:31:55,255 | INFO     | mean x: 1764492529.7359812
[2025-11-30 07:32:27] 2025-11-30 12:31:55,255 | INFO     | mean y: 3487529.329439252
[2025-11-30 07:32:27] 2025-11-30 12:31:55,255 | INFO     | intersect: -40768812985.26668
[2025-11-30 07:32:27] 2025-11-30 12:31:55,255 | INFO     | chi2: 3.0050448832856684
[2025-11-30 07:32:27] 2025-11-30 12:31:55,256 | INFO     | current chi2=3.0050448832856684 (change=45.30184151128696 %)
[2025-11-30 07:32:27] 2025-11-30 12:31:55,256 | INFO     | sum of square deviations: 23469272080.35929
[2025-11-30 07:32:27] 2025-11-30 12:31:55,260 | INFO     | sum of deviations: 591543372657.9614
[2025-11-30 07:32:27] 2025-11-30 12:31:55,260 | INFO     | mean x: 1764492377.2364066
[2025-11-30 07:32:27] 2025-11-30 12:31:55,260 | INFO     | mean y: 3492877.0803782507
[2025-11-30 07:32:27] 2025-11-30 12:31:55,260 | INFO     | intersect: -44470565299.32084
[2025-11-30 07:32:27] 2025-11-30 12:31:55,261 | INFO     | chi2: 2.6951020238993135
[2025-11-30 07:32:27] 2025-11-30 12:31:55,261 | INFO     | current chi2=2.6951020238993135 (change=10.314084195889556 %)
[2025-11-30 07:32:27] 2025-11-30 12:31:55,261 | INFO     | right removable region: 422
[2025-11-30 07:32:27] 2025-11-30 12:31:55,262 | INFO     | sum of square deviations: 24311323645.165813
[2025-11-30 07:32:27] 2025-11-30 12:31:55,265 | INFO     | sum of deviations: 260495000283.70807
[2025-11-30 07:32:27] 2025-11-30 12:31:55,266 | INFO     | mean x: 1764492834.7359812
[2025-11-30 07:32:27] 2025-11-30 12:31:55,266 | INFO     | mean y: 3488231.4929906544
[2025-11-30 07:32:27] 2025-11-30 12:31:55,266 | INFO     | intersect: -18902992065.253326
[2025-11-30 07:32:27] 2025-11-30 12:31:55,266 | INFO     | chi2: 2.9915335983782647
[2025-11-30 07:32:27] 2025-11-30 12:31:55,266 | INFO     | current chi2=2.9915335983782647 (change=45.54777540976613 %)
[2025-11-30 07:32:27] 2025-11-30 12:31:55,267 | INFO     | sum of square deviations: 23469174724.88413
[2025-11-30 07:32:27] 2025-11-30 12:31:55,271 | INFO     | sum of deviations: 219488387873.1893
[2025-11-30 07:32:27] 2025-11-30 12:31:55,271 | INFO     | mean x: 1764492987.2387707
[2025-11-30 07:32:27] 2025-11-30 12:31:55,271 | INFO     | mean y: 3495650.671394799
[2025-11-30 07:32:27] 2025-11-30 12:31:55,271 | INFO     | intersect: -16498393560.283716
[2025-11-30 07:32:27] 2025-11-30 12:31:55,272 | INFO     | chi2: 2.8954087684853547
[2025-11-30 07:32:27] 2025-11-30 12:31:55,272 | INFO     | current chi2=2.8954087684853547 (change=3.213229159285395 %)
[2025-11-30 07:32:27] 2025-11-30 12:31:55,272 | INFO     | left removable region: 20
[2025-11-30 07:32:27] 2025-11-30 12:31:55,272 | INFO     | sum of square deviations: 20144399887.62438
[2025-11-30 07:32:27] 2025-11-30 12:31:55,276 | INFO     | sum of deviations: 344967370565.55945
[2025-11-30 07:32:27] 2025-11-30 12:31:55,276 | INFO     | mean x: 1764492956.7487562
[2025-11-30 07:32:27] 2025-11-30 12:31:55,276 | INFO     | mean y: 3538513.619402985
[2025-11-30 07:32:27] 2025-11-30 12:31:55,277 | INFO     | intersect: -30212923583.373386
[2025-11-30 07:32:27] 2025-11-30 12:31:55,277 | INFO     | chi2: 0.030480828373587524
[2025-11-30 07:32:27] 2025-11-30 12:31:55,277 | INFO     | current memory leak: 17.12 B/s (using 402 data points, chi2=0.03)
[2025-11-30 07:32:27] 2025-11-30 12:31:55,278 | INFO     | could have reported an average CPU frequency of 2401 MHz (18 samples)
[2025-11-30 07:32:27] 2025-11-30 12:31:55,278 | INFO     | ..............................
[2025-11-30 07:32:27] 2025-11-30 12:31:55,278 | INFO     | . Timing measurements:
[2025-11-30 07:32:27] 2025-11-30 12:31:55,278 | INFO     | . get job = 0 s
[2025-11-30 07:32:27] 2025-11-30 12:31:55,278 | INFO     | . initial setup = 2 s
[2025-11-30 07:32:27] 2025-11-30 12:31:55,278 | INFO     | . payload setup = 7 s
[2025-11-30 07:32:27] 2025-11-30 12:31:55,278 | INFO     | . stage-in = 0 s
[2025-11-30 07:32:27] 2025-11-30 12:31:55,278 | INFO     | . payload execution = 26398 s
[2025-11-30 07:32:27] 2025-11-30 12:31:55,278 | INFO     | . stage-out = 3 s
[2025-11-30 07:32:27] 2025-11-30 12:31:55,279 | INFO     | . log creation = 0 s
[2025-11-30 07:32:27] 2025-11-30 12:31:55,279 | INFO     | ..............................
[2025-11-30 07:32:27] 2025-11-30 12:31:55,359 | INFO     | 
[2025-11-30 07:32:27] 2025-11-30 12:31:55,359 | INFO     | job summary report
[2025-11-30 07:32:27] 2025-11-30 12:31:55,359 | INFO     | --------------------------------------------------
[2025-11-30 07:32:27] 2025-11-30 12:31:55,359 | INFO     | PanDA job id: 6900935625
[2025-11-30 07:32:27] 2025-11-30 12:31:55,360 | INFO     | task id: 47556185
[2025-11-30 07:32:27] 2025-11-30 12:31:55,360 | INFO     | errors: (none)
[2025-11-30 07:32:27] 2025-11-30 12:31:55,360 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 07:32:27] 2025-11-30 12:31:55,360 | INFO     | pilot state: finished 
[2025-11-30 07:32:27] 2025-11-30 12:31:55,360 | INFO     | transexitcode: 0
[2025-11-30 07:32:27] 2025-11-30 12:31:55,360 | INFO     | exeerrorcode: 0
[2025-11-30 07:32:27] 2025-11-30 12:31:55,360 | INFO     | exeerrordiag: 
[2025-11-30 07:32:27] 2025-11-30 12:31:55,361 | INFO     | exitcode: 0
[2025-11-30 07:32:27] 2025-11-30 12:31:55,361 | INFO     | exitmsg: OK
[2025-11-30 07:32:27] 2025-11-30 12:31:55,361 | INFO     | cpuconsumptiontime: 300508 s
[2025-11-30 07:32:27] 2025-11-30 12:31:55,361 | INFO     | nevents: 1000
[2025-11-30 07:32:27] 2025-11-30 12:31:55,361 | INFO     | neventsw: 0
[2025-11-30 07:32:27] 2025-11-30 12:31:55,361 | INFO     | pid: 24293
[2025-11-30 07:32:27] 2025-11-30 12:31:55,362 | INFO     | pgrp: 24293
[2025-11-30 07:32:27] 2025-11-30 12:31:55,362 | INFO     | corecount: 12
[2025-11-30 07:32:27] 2025-11-30 12:31:55,362 | INFO     | event service: False
[2025-11-30 07:32:27] 2025-11-30 12:31:55,362 | INFO     | sizes: {0: 2284146, 1: 2284345, 5: 2284607, 11: 2284663, 26409: 2322124, 26414: 2331118, 26417: 2331302, 26422: 2331548}
[2025-11-30 07:32:27] 2025-11-30 12:31:55,362 | INFO     | --------------------------------------------------
[2025-11-30 07:32:27] 2025-11-30 12:31:55,362 | INFO     | 
[2025-11-30 07:32:27] 2025-11-30 12:31:55,363 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-30 07:32:27] 2025-11-30 12:31:55,386 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,387 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,387 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,387 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,387 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,387 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,388 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,388 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,388 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,388 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,388 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,388 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,389 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,389 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,389 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,389 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,389 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,389 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 07:32:27] 2025-11-30 12:31:55,390 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,390 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 07:32:27] 2025-11-30 12:31:55,390 | INFO     | job 6900935625 has completed (purged errors)
[2025-11-30 07:32:27] 2025-11-30 12:31:55,390 | INFO     | overall cleanup function is called
[2025-11-30 07:32:27] 2025-11-30 12:31:56,407 | INFO     | --- collectZombieJob: --- 10, [24293]
[2025-11-30 07:32:27] 2025-11-30 12:31:56,407 | INFO     | zombie collector waiting for pid 24293
[2025-11-30 07:32:27] 2025-11-30 12:31:56,407 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 07:32:27] 2025-11-30 12:31:56,408 | INFO     | collected zombie processes
[2025-11-30 07:32:27] 2025-11-30 12:31:56,408 | INFO     | will attempt to kill all subprocesses of pid=24293
[2025-11-30 07:32:27] 2025-11-30 12:31:56,500 | INFO     | process IDs to be killed: [24293] (in reverse order)
[2025-11-30 07:32:27] 2025-11-30 12:31:56,549 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 07:32:27] 2025-11-30 12:31:56,549 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 07:32:27] 2025-11-30 12:31:56,553 | INFO     | did not find any defunct processes belonging to 24293
[2025-11-30 07:32:27] 2025-11-30 12:31:56,556 | INFO     | did not find any defunct processes belonging to 24293
[2025-11-30 07:32:27] 2025-11-30 12:31:56,558 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 07:32:27] 2025-11-30 12:31:56,559 | INFO     | ready for new job
[2025-11-30 07:32:27] 2025-11-30 12:31:56,559 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 07:32:27] 2025-11-30 12:31:56,561 | INFO     | ***************************************
[2025-11-30 07:32:27] 2025-11-30 12:31:56,561 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 07:32:27] 2025-11-30 12:31:56,561 | INFO     | ***************************************
[2025-11-30 07:32:27] 2025-11-30 12:31:56,561 | INFO     | 
[2025-11-30 07:32:27] 2025-11-30 12:31:56,562 | INFO     | architecture information:
[2025-11-30 07:32:27] 2025-11-30 12:31:56,562 | INFO     | executing command: cat /etc/os-release
[2025-11-30 07:32:27] 2025-11-30 12:31:56,578 | INFO     | cat /etc/os-release:
[2025-11-30 07:32:27] NAME="CentOS Linux"
[2025-11-30 07:32:27] VERSION="7 (Core)"
[2025-11-30 07:32:27] ID="centos"
[2025-11-30 07:32:27] ID_LIKE="rhel fedora"
[2025-11-30 07:32:27] VERSION_ID="7"
[2025-11-30 07:32:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 07:32:27] ANSI_COLOR="0;31"
[2025-11-30 07:32:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 07:32:27] HOME_URL="https://www.centos.org/"
[2025-11-30 07:32:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 07:32:27] 
[2025-11-30 07:32:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 07:32:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 07:32:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 07:32:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 07:32:27] 
[2025-11-30 07:32:27] 2025-11-30 12:31:56,578 | INFO     | ***************************************
[2025-11-30 07:32:27] 2025-11-30 12:31:57,082 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-30 07:32:27] 2025-11-30 12:31:57,101 | INFO     | sufficient remaining disk space (28236054528 B)
[2025-11-30 07:32:27] 2025-11-30 12:31:57,101 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 07:32:27] 2025-11-30 12:31:57,102 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 07:32:27] 2025-11-30 12:31:57,102 | INFO     | update_server=False
[2025-11-30 07:32:27] 2025-11-30 12:31:57,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 07:32:27] 2025-11-30 12:31:57,103 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 07:32:27] 2025-11-30 12:31:57,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 07:32:27] 2025-11-30 12:31:57,326 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 07:32:27] 2025-11-30 12:31:57,422 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-30 07:32:27] 2025-11-30 12:31:57,422 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-30 07:32:27] 2025-11-30 12:31:57,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 07:32:27] 2025-11-30 12:31:57,423 | INFO     | will abort loop
[2025-11-30 07:32:27] 2025-11-30 12:31:57,464 | INFO     | all payload control threads have been joined
[2025-11-30 07:32:27] 2025-11-30 12:31:57,483 | INFO     | all data control threads have been joined
[2025-11-30 07:32:27] 2025-11-30 12:31:58,108 | INFO     | [job] retrieve thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:58,109 | INFO     | [job] queue monitor thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:58,211 | INFO     | all job control threads have been joined
[2025-11-30 07:32:27] 2025-11-30 12:31:58,428 | INFO     | [job] job monitor thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:58,470 | INFO     | [payload] control thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:58,488 | INFO     | [data] control thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:58,697 | INFO     | [data] copytool_in thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:58,697 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:58,881 | INFO     | [payload] failed_post thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:58,911 | INFO     | [job] validate thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:59,216 | INFO     | [job] control thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:59,282 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:59,331 | INFO     | [data] copytool_out thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:59,379 | INFO     | [payload] validate_post thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:59,395 | INFO     | [monitor] cgroup control has ended
[2025-11-30 07:32:27] 2025-11-30 12:31:59,396 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:31:59,556 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:32:01,109 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 07:32:27] 2025-11-30 12:32:02,571 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755129534272)>', '<ExcThread(monitor, started 139754427356928)>']
[2025-11-30 07:32:27] 2025-11-30 12:32:07,589 | INFO     | all workflow threads have been joined
[2025-11-30 07:32:27] 2025-11-30 12:32:07,589 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 07:32:27] 2025-11-30 12:32:07,589 | INFO     | traces error code: 0
[2025-11-30 07:32:27] 2025-11-30 12:32:07,590 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 07:32:27] 2025-11-30 12:32:26,735 | INFO     | PID=16948 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 07:32:27] 2025-11-30 12:32:26,735 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 07:32:27] 2025-11-30 12:32:26,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 07:32:27] 2025-11-30 12:32:26,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 07:32:27] 2025-11-30 12:32:26,735 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 07:32:27] 2025-11-30 12:32:26,736 | CRITICAL | thread 'MainThread' is not alive
[2025-11-30 07:32:27] 2025-11-30 12:32:26,736 | INFO     | [monitor] control thread has ended
[2025-11-30 07:32:27] 2025-11-30 12:32:26,832 [wrapper] ==== pilot stdout END ====
[2025-11-30 07:32:27] 2025-11-30 12:32:26,836 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 07:32:27] 2025-11-30 12:32:26,840 [wrapper] pilotpid: 16948
[2025-11-30 07:32:27] 2025-11-30 12:32:26,844 [wrapper] Pilot exit status: 0
[2025-11-30 07:32:27] 2025-11-30 12:32:26,859 [wrapper] pandaids: 6900935625 6900935625
[2025-11-30 07:32:27] 2025-11-30 12:32:26,897 [wrapper] cleanup supervisor_pilot 20647 16949
[2025-11-30 07:32:27] 2025-11-30 12:32:26,901 [wrapper] Test setup, not cleaning
[2025-11-30 07:32:27] 2025-11-30 12:32:26,904 [wrapper] apfmon messages muted
[2025-11-30 07:32:27] 2025-11-30 12:32:26,908 [wrapper] ==== wrapper stdout END ====
[2025-11-30 07:32:27] 2025-11-30 12:32:26,911 [wrapper] ==== wrapper stderr END ====
[2025-11-30 07:32:27]  *** Error codes and diagnostics ***
[2025-11-30 07:32:27]     "exeErrorCode": 0,
[2025-11-30 07:32:27]     "exeErrorDiag": "",
[2025-11-30 07:32:27]     "pilotErrorCode": 0,
[2025-11-30 07:32:27]     "pilotErrorDiag": "",
[2025-11-30 07:32:27]  *** Listing of results directory ***
[2025-11-30 07:32:27] total 1724744
[2025-11-30 07:32:27] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas    576529 Nov 27 19:58 pilot3.tar.gz
[2025-11-30 07:32:27] -rwx------ 1 boincer umatlas     36292 Nov 27 20:00 runpilot2-wrapper.sh
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas      5112 Nov 27 20:01 queuedata.json
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas       100 Nov 29 16:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 07:32:27] -rwxr-xr-x 1 boincer umatlas      7986 Nov 29 16:52 run_atlas
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas       105 Nov 29 16:52 job.xml
[2025-11-30 07:32:27] -rw-r--r-- 3 boincer umatlas 409666930 Nov 29 16:52 EVNT.47483658._004466.pool.root.1
[2025-11-30 07:32:27] -rw-r--r-- 3 boincer umatlas 409666930 Nov 29 16:52 ATLAS.root_0
[2025-11-30 07:32:27] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 16:52 start_atlas.sh
[2025-11-30 07:32:27] drwxrwx--x 2 boincer umatlas      4096 Nov 29 16:52 shared
[2025-11-30 07:32:27] -rw-r--r-- 2 boincer umatlas    590115 Nov 29 16:52 input.tar.gz
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas         0 Nov 29 16:52 boinc_lockfile
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas      2788 Nov 30 00:11 pandaJob.out
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas        57 Nov 30 00:11 setup.sh.local
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas    991196 Nov 30 00:11 agis_schedconf.cvmfs.json
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas       533 Nov 30 07:22 boinc_task_state.xml
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas 931107376 Nov 30 07:31 HITS.47556185._002299.pool.root.1
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas        96 Nov 30 07:31 pilot_heartbeat.json
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas      1064 Nov 30 07:31 memory_monitor_summary.json
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas   1516240 Nov 30 07:31 agis_ddmendpoints.agis.ALL.json
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas   2179485 Nov 30 07:31 log.47556185._002299.job.log.tgz.1
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas      8675 Nov 30 07:31 heartbeat.json
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas      5956 Nov 30 07:32 init_data.xml
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas      8192 Nov 30 07:32 boinc_mmap_file
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas        29 Nov 30 07:32 wrapper_checkpoint.txt
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas       815 Nov 30 07:32 pilotlog.txt
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas   3707740 Nov 30 07:32 log.47556185._002299.job.log.1
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas       353 Nov 30 07:32 output.list
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas       620 Nov 30 07:32 runtime_log
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas   5908480 Nov 30 07:32 result.tar.gz
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas      9430 Nov 30 07:32 runtime_log.err
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas       795 Nov 30 07:32 D0nMDmo11i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQ1KKDmM0Mvpm.diag
[2025-11-30 07:32:27] -rw-r--r-- 1 boincer umatlas     23440 Nov 30 07:32 stderr.txt
[2025-11-30 07:32:27] HITS file was successfully produced:
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas 931107376 Nov 30 07:31 shared/HITS.pool.root.1
[2025-11-30 07:32:27]  *** Contents of shared directory: ***
[2025-11-30 07:32:27] total 1315728
[2025-11-30 07:32:27] -rw-r--r-- 3 boincer umatlas 409666930 Nov 29 16:52 ATLAS.root_0
[2025-11-30 07:32:27] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 16:52 start_atlas.sh
[2025-11-30 07:32:27] -rw-r--r-- 2 boincer umatlas    590115 Nov 29 16:52 input.tar.gz
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas 931107376 Nov 30 07:31 HITS.pool.root.1
[2025-11-30 07:32:27] -rw------- 1 boincer umatlas   5908480 Nov 30 07:32 result.tar.gz
07:32:28 (12805): run_atlas exited; CPU time 293628.673244
07:32:28 (12805): called boinc_finish(0)

</stderr_txt>
]]>

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