Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:51:59 (2374): wrapper (7.7.26015): starting
02:51:59 (2374): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 02:51:59] Arguments: --nthreads 8
[2025-11-30 02:51:59] Threads: 8
[2025-11-30 02:51:59] Checking for CVMFS
[2025-11-30 02:51:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 02:51:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 02:51:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 02:51:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 02:51:59] 2.11.0.0 10459 70786 95076 153463 2 108 2482196 4096000 2888 130560 5 4732510 99.638 3730966 428 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-30 02:51:59] CVMFS is ok
[2025-11-30 02:51:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 02:51:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 02:51:59] Further information can be found at the LHC@home message board.
[2025-11-30 02:51:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 02:51:59] Checking for apptainer binary...
[2025-11-30 02:51:59] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-30 02:51:59] apptainer is not installed, using version from CVMFS
[2025-11-30 02:51:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 02:51:59] WARNING: Environment variable TMPDIR already has value [/tmp/job_10935255/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node411
[2025-11-30 02:51:59] apptainer works
[2025-11-30 02:51:59] Set ATHENA_PROC_NUMBER=8
[2025-11-30 02:51:59] Set ATHENA_CORE_NUMBER=8
[2025-11-30 02:51:59] Starting ATLAS job with PandaID=6900588804
[2025-11-30 02:51:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10935255/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 07:17:35]  *** The last 200 lines of the pilot log: ***
[2025-11-30 07:17:35] 2025-11-30 06:16:55,226 | INFO     | time since job start (15891s) is within the limit (172800.0s)
[2025-11-30 07:17:35] 2025-11-30 06:16:55,795 | INFO     | monitor loop #1156: job 0:6900588804 is in state 'finished'
[2025-11-30 07:17:35] 2025-11-30 06:16:55,795 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 07:17:35] 2025-11-30 06:16:56,896 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 07:17:35] 2025-11-30 06:16:56,900 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2474.5935
[2025-11-30 07:17:35] 2025-11-30 06:16:56,906 | INFO     | using path: /tmp/job_10935255/atlas/pilot/slots/0/PanDA_Pilot-6900588804/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 07:17:35] 2025-11-30 06:16:56,906 | INFO     | extracted standard info from prmon json
[2025-11-30 07:17:35] 2025-11-30 06:16:56,906 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 07:17:35] 2025-11-30 06:16:56,906 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 07:17:35] 2025-11-30 06:16:56,909 | INFO     | fitting pss+swap vs Time
[2025-11-30 07:17:35] 2025-11-30 06:16:56,909 | INFO     | sum of square deviations: 5513070810.0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,910 | INFO     | sum of deviations: 120205698481.0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,910 | INFO     | mean x: 1764475472.0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,910 | INFO     | mean y: 2875456.704980843
[2025-11-30 07:17:35] 2025-11-30 06:16:56,910 | INFO     | intersect: -38469332478.5949
[2025-11-30 07:17:35] 2025-11-30 06:16:56,910 | INFO     | chi2: 3.7191659686511174
[2025-11-30 07:17:35] 2025-11-30 06:16:56,910 | INFO     | sum of square deviations: 5202255680.0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,911 | INFO     | sum of deviations: 178201392574.5
[2025-11-30 07:17:35] 2025-11-30 06:16:56,911 | INFO     | mean x: 1764475319.5
[2025-11-30 07:17:35] 2025-11-30 06:16:56,911 | INFO     | mean y: 2903753.62890625
[2025-11-30 07:17:35] 2025-11-30 06:16:56,911 | INFO     | intersect: -60438562110.316444
[2025-11-30 07:17:35] 2025-11-30 06:16:56,911 | INFO     | chi2: 1.913503154607056
[2025-11-30 07:17:35] 2025-11-30 06:16:56,911 | INFO     | current chi2=1.913503154607056 (change=48.55020801072093 %)
[2025-11-30 07:17:35] 2025-11-30 06:16:56,912 | INFO     | sum of square deviations: 4903347750.0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,912 | INFO     | sum of deviations: 171196764435.0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,913 | INFO     | mean x: 1764475167.0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,913 | INFO     | mean y: 2900180.235059761
[2025-11-30 07:17:35] 2025-11-30 06:16:56,913 | INFO     | intersect: -61602446802.61074
[2025-11-30 07:17:35] 2025-11-30 06:16:56,913 | INFO     | chi2: 1.9126157846824028
[2025-11-30 07:17:35] 2025-11-30 06:16:56,913 | INFO     | current chi2=1.9126157846824028 (change=0.0463741030432447 %)
[2025-11-30 07:17:35] 2025-11-30 06:16:56,913 | INFO     | right removable region: 250
[2025-11-30 07:17:35] 2025-11-30 06:16:56,913 | INFO     | sum of square deviations: 5202255680.0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,914 | INFO     | sum of deviations: 59492887609.5
[2025-11-30 07:17:35] 2025-11-30 06:16:56,914 | INFO     | mean x: 1764475624.5
[2025-11-30 07:17:35] 2025-11-30 06:16:56,914 | INFO     | mean y: 2905059.10546875
[2025-11-30 07:17:35] 2025-11-30 06:16:56,914 | INFO     | intersect: -20175601434.078045
[2025-11-30 07:17:35] 2025-11-30 06:16:56,914 | INFO     | chi2: 1.8878330175003284
[2025-11-30 07:17:35] 2025-11-30 06:16:56,914 | INFO     | current chi2=1.8878330175003284 (change=49.24042020676438 %)
[2025-11-30 07:17:35] 2025-11-30 06:16:56,914 | INFO     | sum of square deviations: 4903347750.0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,915 | INFO     | sum of deviations: 47037711585.99999
[2025-11-30 07:17:35] 2025-11-30 06:16:56,915 | INFO     | mean x: 1764475777.0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,915 | INFO     | mean y: 2911407.219123506
[2025-11-30 07:17:35] 2025-11-30 06:16:56,915 | INFO     | intersect: -16923667520.210457
[2025-11-30 07:17:35] 2025-11-30 06:16:56,916 | INFO     | chi2: 1.862439901250153
[2025-11-30 07:17:35] 2025-11-30 06:16:56,916 | INFO     | current chi2=1.862439901250153 (change=1.345093343255454 %)
[2025-11-30 07:17:35] 2025-11-30 06:16:56,916 | INFO     | left removable region: 20
[2025-11-30 07:17:35] 2025-11-30 06:16:56,916 | INFO     | sum of square deviations: 3772712597.5
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | sum of deviations: 79989529116.0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | mean x: 1764475746.5
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | mean y: 2948647.304347826
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | intersect: -37407689044.17106
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | chi2: 0.021780790947833875
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | current memory leak: 21.20 B/s (using 230 data points, chi2=0.02)
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | could have reported an average CPU frequency of 2862 MHz (12 samples)
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | ..............................
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | . Timing measurements:
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | . get job = 0 s
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | . initial setup = 1 s
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | . payload setup = 2 s
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | . stage-in = 0 s
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | . payload execution = 15870 s
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | . stage-out = 1 s
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | . log creation = 0 s
[2025-11-30 07:17:35] 2025-11-30 06:16:56,917 | INFO     | ..............................
[2025-11-30 07:17:35] 2025-11-30 06:16:56,966 | INFO     | 
[2025-11-30 07:17:35] 2025-11-30 06:16:56,966 | INFO     | job summary report
[2025-11-30 07:17:35] 2025-11-30 06:16:56,966 | INFO     | --------------------------------------------------
[2025-11-30 07:17:35] 2025-11-30 06:16:56,966 | INFO     | PanDA job id: 6900588804
[2025-11-30 07:17:35] 2025-11-30 06:16:56,966 | INFO     | task id: 47556185
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | errors: (none)
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | pilot state: finished 
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | transexitcode: 0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | exeerrorcode: 0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | exeerrordiag: 
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | exitcode: 0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | exitmsg: OK
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | cpuconsumptiontime: 121024 s
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | nevents: 1000
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | neventsw: 0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | pid: 13310
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | pgrp: 13310
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | corecount: 8
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | event service: False
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | sizes: {0: 2283488, 1: 2284470, 3: 2284732, 11: 2284760, 15876: 2317065, 15877: 2326273, 15880: 2326463}
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | --------------------------------------------------
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | 
[2025-11-30 07:17:35] 2025-11-30 06:16:56,967 | INFO     | executing command: ls -lF /tmp/job_10935255/atlas/pilot/slots/0
[2025-11-30 07:17:35] 2025-11-30 06:16:56,977 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,977 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,977 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,977 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,977 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,977 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,977 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,977 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,977 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,977 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,978 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,978 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,978 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,978 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,978 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,978 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,978 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,978 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 07:17:35] 2025-11-30 06:16:56,978 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,978 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 07:17:35] 2025-11-30 06:16:56,978 | INFO     | job 6900588804 has completed (purged errors)
[2025-11-30 07:17:35] 2025-11-30 06:16:56,978 | INFO     | overall cleanup function is called
[2025-11-30 07:17:35] 2025-11-30 06:16:57,985 | INFO     | --- collectZombieJob: --- 10, [13310]
[2025-11-30 07:17:35] 2025-11-30 06:16:57,985 | INFO     | zombie collector waiting for pid 13310
[2025-11-30 07:17:35] 2025-11-30 06:16:57,985 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 07:17:35] 2025-11-30 06:16:57,985 | INFO     | collected zombie processes
[2025-11-30 07:17:35] 2025-11-30 06:16:57,986 | INFO     | will attempt to kill all subprocesses of pid=13310
[2025-11-30 07:17:35] 2025-11-30 06:16:58,080 | INFO     | process IDs to be killed: [13310] (in reverse order)
[2025-11-30 07:17:35] 2025-11-30 06:16:58,115 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 07:17:35] 2025-11-30 06:16:58,115 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 07:17:35] 2025-11-30 06:16:58,119 | INFO     | did not find any defunct processes belonging to 13310
[2025-11-30 07:17:35] 2025-11-30 06:16:58,122 | INFO     | did not find any defunct processes belonging to 13310
[2025-11-30 07:17:35] 2025-11-30 06:16:58,122 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 07:17:35] 2025-11-30 06:16:58,122 | INFO     | ready for new job
[2025-11-30 07:17:35] 2025-11-30 06:16:58,122 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 07:17:35] 2025-11-30 06:16:58,123 | INFO     | ***************************************
[2025-11-30 07:17:35] 2025-11-30 06:16:58,123 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 07:17:35] 2025-11-30 06:16:58,123 | INFO     | ***************************************
[2025-11-30 07:17:35] 2025-11-30 06:16:58,123 | INFO     | 
[2025-11-30 07:17:35] 2025-11-30 06:16:58,136 | INFO     | architecture information:
[2025-11-30 07:17:35] 2025-11-30 06:16:58,136 | INFO     | executing command: cat /etc/os-release
[2025-11-30 07:17:35] 2025-11-30 06:16:58,144 | INFO     | cat /etc/os-release:
[2025-11-30 07:17:35] NAME="CentOS Linux"
[2025-11-30 07:17:35] VERSION="7 (Core)"
[2025-11-30 07:17:35] ID="centos"
[2025-11-30 07:17:35] ID_LIKE="rhel fedora"
[2025-11-30 07:17:35] VERSION_ID="7"
[2025-11-30 07:17:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 07:17:35] ANSI_COLOR="0;31"
[2025-11-30 07:17:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 07:17:35] HOME_URL="https://www.centos.org/"
[2025-11-30 07:17:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 07:17:35] 
[2025-11-30 07:17:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 07:17:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 07:17:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 07:17:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 07:17:35] 
[2025-11-30 07:17:35] 2025-11-30 06:16:58,144 | INFO     | ***************************************
[2025-11-30 07:17:35] 2025-11-30 06:16:58,647 | INFO     | executing command: df -mP /tmp/job_10935255/atlas/pilot/slots/0
[2025-11-30 07:17:35] 2025-11-30 06:16:58,654 | INFO     | sufficient remaining disk space (223933890560 B)
[2025-11-30 07:17:35] 2025-11-30 06:16:58,654 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 07:17:35] 2025-11-30 06:16:58,655 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 07:17:35] 2025-11-30 06:16:58,655 | INFO     | update_server=False
[2025-11-30 07:17:35] 2025-11-30 06:16:58,655 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 07:17:35] 2025-11-30 06:16:58,655 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 07:17:35] 2025-11-30 06:16:58,886 | INFO     | all payload control threads have been joined
[2025-11-30 07:17:35] 2025-11-30 06:16:59,303 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 07:17:35] 2025-11-30 06:16:59,303 | INFO     | aborting loop
[2025-11-30 07:17:35] 2025-11-30 06:16:59,364 | INFO     | all data control threads have been joined
[2025-11-30 07:17:35] 2025-11-30 06:16:59,583 | INFO     | all job control threads have been joined
[2025-11-30 07:17:35] 2025-11-30 06:16:59,660 | INFO     | [job] retrieve thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:16:59,660 | INFO     | [job] queue monitor thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:16:59,829 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 07:17:35] 2025-11-30 06:16:59,875 | INFO     | [job] validate thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:16:59,891 | INFO     | [payload] control thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:16:59,920 | INFO     | [data] copytool_in thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:17:00,020 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:17:00,231 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:17:00,308 | INFO     | [job] job monitor thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:17:00,369 | INFO     | [data] control thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:17:00,376 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 07:17:35] 2025-11-30 06:17:00,472 | INFO     | [payload] validate_post thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:17:00,588 | INFO     | [job] control thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:17:00,590 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:17:00,741 | INFO     | [payload] failed_post thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:17:00,856 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:17:01,835 | INFO     | [data] copytool_out thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:17:04,381 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 07:17:35] 2025-11-30 06:17:28,406 | INFO     | PID=6439 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-30 07:17:35] 2025-11-30 06:17:28,406 | INFO     | .. there are 3 such processes running
[2025-11-30 07:17:35] 2025-11-30 06:17:28,407 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 07:17:35] 2025-11-30 06:17:28,407 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 07:17:35] 2025-11-30 06:17:28,407 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 07:17:35] 2025-11-30 06:17:30,518 | INFO     | [monitor] cgroup control has ended
[2025-11-30 07:17:35] 2025-11-30 06:17:30,529 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-11-30 07:17:35] 2025-11-30 06:17:31,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 07:17:35] 2025-11-30 06:17:31,422 | INFO     | [monitor] control thread has ended
[2025-11-30 07:17:35] 2025-11-30 06:17:35,554 | INFO     | all workflow threads have been joined
[2025-11-30 07:17:35] 2025-11-30 06:17:35,554 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 07:17:35] 2025-11-30 06:17:35,554 | INFO     | traces error code: 0
[2025-11-30 07:17:35] 2025-11-30 06:17:35,554 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 07:17:35] 2025-11-30 06:17:35,608 [wrapper] ==== pilot stdout END ====
[2025-11-30 07:17:35] 2025-11-30 06:17:35,610 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 07:17:35] 2025-11-30 06:17:35,611 [wrapper] pilotpid: 6439
[2025-11-30 07:17:35] 2025-11-30 06:17:35,612 [wrapper] Pilot exit status: 0
[2025-11-30 07:17:35] 2025-11-30 06:17:35,616 [wrapper] pandaids: 6900588804
[2025-11-30 07:17:35] 2025-11-30 06:17:35,638 [wrapper] cleanup supervisor_pilot  5622 6440
[2025-11-30 07:17:35] 2025-11-30 06:17:35,639 [wrapper] Test setup, not cleaning
[2025-11-30 07:17:35] 2025-11-30 06:17:35,641 [wrapper] apfmon messages muted
[2025-11-30 07:17:35] 2025-11-30 06:17:35,642 [wrapper] ==== wrapper stdout END ====
[2025-11-30 07:17:35] 2025-11-30 06:17:35,643 [wrapper] ==== wrapper stderr END ====
[2025-11-30 07:17:35]  *** Error codes and diagnostics ***
[2025-11-30 07:17:35]     "exeErrorCode": 0,
[2025-11-30 07:17:35]     "exeErrorDiag": "",
[2025-11-30 07:17:35]     "pilotErrorCode": 0,
[2025-11-30 07:17:35]     "pilotErrorDiag": "",
[2025-11-30 07:17:35]  *** Listing of results directory ***
[2025-11-30 07:17:35] total 1311344
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user    576529 Nov 28 01:58 pilot3.tar.gz
[2025-11-30 07:17:35] -rwx------ 1 mf493845 unix-user     36292 Nov 28 02:00 runpilot2-wrapper.sh
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user      5112 Nov 28 02:01 queuedata.json
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user       100 Nov 30 01:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 07:17:35] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 30 01:07 run_atlas
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user       105 Nov 30 01:07 job.xml
[2025-11-30 07:17:35] -rw-r--r-- 2 mf493845 unix-user 410654017 Nov 30 02:51 EVNT.47483658._004434.pool.root.1
[2025-11-30 07:17:35] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 30 02:51 start_atlas.sh
[2025-11-30 07:17:35] drwxrwx--x 2 mf493845 unix-user       100 Nov 30 02:51 shared
[2025-11-30 07:17:35] -rw-r--r-- 2 mf493845 unix-user    590109 Nov 30 02:51 input.tar.gz
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user      6392 Nov 30 02:51 init_data.xml
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user         0 Nov 30 02:51 boinc_setup_complete
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user      8192 Nov 30 02:51 boinc_mmap_file
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user         0 Nov 30 02:51 boinc_lockfile
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user      2787 Nov 30 02:51 pandaJob.out
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user    991828 Nov 30 02:52 agis_schedconf.cvmfs.json
[2025-11-30 07:17:35] drwx------ 5 mf493845 unix-user       440 Nov 30 02:52 pilot3
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user 920592270 Nov 30 07:16 HITS.47556185._001980.pool.root.1
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user      1029 Nov 30 07:16 memory_monitor_summary.json
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user   1516240 Nov 30 07:16 agis_ddmendpoints.agis.ALL.json
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user   1556872 Nov 30 07:16 log.47556185._001980.job.log.tgz.1
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user      8591 Nov 30 07:16 heartbeat.json
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user        95 Nov 30 07:17 pilot_heartbeat.json
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user      4834 Nov 30 07:17 pilotlog.txt
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user   2281024 Nov 30 07:17 log.47556185._001980.job.log.1
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user       353 Nov 30 07:17 output.list
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user       620 Nov 30 07:17 runtime_log
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user   3860480 Nov 30 07:17 result.tar.gz
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user      9221 Nov 30 07:17 runtime_log.err
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user       650 Nov 30 07:17 14KODma11i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfzKKDmeeU4nn.diag
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user     21679 Nov 30 07:17 stderr.txt
[2025-11-30 07:17:35] HITS file was successfully produced:
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user 920592270 Nov 30 07:16 shared/HITS.pool.root.1
[2025-11-30 07:17:35]  *** Contents of shared directory: ***
[2025-11-30 07:17:35] total 1304416
[2025-11-30 07:17:35] -rw-r--r-- 2 mf493845 unix-user 410654017 Nov 30 02:51 ATLAS.root_0
[2025-11-30 07:17:35] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 30 02:51 start_atlas.sh
[2025-11-30 07:17:35] -rw-r--r-- 2 mf493845 unix-user    590109 Nov 30 02:51 input.tar.gz
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user 920592270 Nov 30 07:16 HITS.pool.root.1
[2025-11-30 07:17:35] -rw------- 1 mf493845 unix-user   3860480 Nov 30 07:17 result.tar.gz
07:17:36 (2374): run_atlas exited; CPU time 121205.688838
07:17:36 (2374): called boinc_finish(0)

</stderr_txt>
]]>

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