Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:16:58 (8993): wrapper (7.7.26015): starting
02:16:58 (8993): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 02:16:58] Arguments: --nthreads 8
[2025-11-30 02:16:58] Threads: 8
[2025-11-30 02:16:58] Checking for CVMFS
[2025-11-30 02:16:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 02:16:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 02:16:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 02:16:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 02:16:59] 2.11.0.0 4053 70600 103472 153463 3 88 3023348 4096001 699 130560 1 9788500 99.630 7590498 727 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-30 02:16:59] CVMFS is ok
[2025-11-30 02:16:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 02:16:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 02:16:59] Further information can be found at the LHC@home message board.
[2025-11-30 02:16:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 02:16:59] Checking for apptainer binary...
[2025-11-30 02:16:59] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-30 02:16:59] apptainer is not installed, using version from CVMFS
[2025-11-30 02:16:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 02:16:59] WARNING: Environment variable TMPDIR already has value [/tmp/job_10935089/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node309
[2025-11-30 02:16:59] apptainer works
[2025-11-30 02:16:59] Set ATHENA_PROC_NUMBER=8
[2025-11-30 02:16:59] Set ATHENA_CORE_NUMBER=8
[2025-11-30 02:16:59] Starting ATLAS job with PandaID=6894266241
[2025-11-30 02:16:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10935089/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 06:42:52]  *** The last 200 lines of the pilot log: ***
[2025-11-30 06:42:52] 2025-11-30 05:42:18,447 | INFO     | number of running child processes to parent process 4333: 1
[2025-11-30 06:42:52] 2025-11-30 05:42:18,447 | INFO     | maximum number of monitored processes: 16
[2025-11-30 06:42:52] 2025-11-30 05:42:19,199 | INFO     | time since job start (15915s) is within the limit (172800.0s)
[2025-11-30 06:42:52] 2025-11-30 05:42:19,695 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 06:42:52] 2025-11-30 05:42:19,699 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2628.0780937500003
[2025-11-30 06:42:52] 2025-11-30 05:42:19,716 | INFO     | using path: /tmp/job_10935089/atlas/pilot/slots/0/PanDA_Pilot-6894266241/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 06:42:52] 2025-11-30 05:42:19,717 | INFO     | extracted standard info from prmon json
[2025-11-30 06:42:52] 2025-11-30 05:42:19,717 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 06:42:52] 2025-11-30 05:42:19,717 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 06:42:52] 2025-11-30 05:42:19,719 | INFO     | fitting pss+swap vs Time
[2025-11-30 06:42:52] 2025-11-30 05:42:19,720 | INFO     | sum of square deviations: 5513070810.0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,720 | INFO     | sum of deviations: 123311066168.0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,721 | INFO     | mean x: 1764473373.0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,721 | INFO     | mean y: 2928660.9616858237
[2025-11-30 06:42:52] 2025-11-30 05:42:19,721 | INFO     | intersect: -39463114919.50833
[2025-11-30 06:42:52] 2025-11-30 05:42:19,721 | INFO     | chi2: 2.884186369531884
[2025-11-30 06:42:52] 2025-11-30 05:42:19,721 | INFO     | sum of square deviations: 5202255680.0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,722 | INFO     | sum of deviations: 171130345591.5
[2025-11-30 06:42:52] 2025-11-30 05:42:19,722 | INFO     | mean x: 1764473220.5
[2025-11-30 06:42:52] 2025-11-30 05:42:19,722 | INFO     | mean y: 2951949.68359375
[2025-11-30 06:42:52] 2025-11-30 05:42:19,722 | INFO     | intersect: -58040122167.56394
[2025-11-30 06:42:52] 2025-11-30 05:42:19,722 | INFO     | chi2: 1.4664166056850612
[2025-11-30 06:42:52] 2025-11-30 05:42:19,722 | INFO     | current chi2=1.4664166056850612 (change=49.156662649263296 %)
[2025-11-30 06:42:52] 2025-11-30 05:42:19,722 | INFO     | sum of square deviations: 4903347750.0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,723 | INFO     | sum of deviations: 165248324913.00003
[2025-11-30 06:42:52] 2025-11-30 05:42:19,723 | INFO     | mean x: 1764473068.0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,723 | INFO     | mean y: 2948949.003984064
[2025-11-30 06:42:52] 2025-11-30 05:42:19,723 | INFO     | intersect: -59461774686.21076
[2025-11-30 06:42:52] 2025-11-30 05:42:19,724 | INFO     | chi2: 1.4633717855657453
[2025-11-30 06:42:52] 2025-11-30 05:42:19,724 | INFO     | current chi2=1.4633717855657453 (change=0.20763677303650008 %)
[2025-11-30 06:42:52] 2025-11-30 05:42:19,724 | INFO     | right removable region: 250
[2025-11-30 06:42:52] 2025-11-30 05:42:19,724 | INFO     | sum of square deviations: 5202255680.0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,725 | INFO     | sum of deviations: 73200829386.5
[2025-11-30 06:42:52] 2025-11-30 05:42:19,725 | INFO     | mean x: 1764473525.5
[2025-11-30 06:42:52] 2025-11-30 05:42:19,725 | INFO     | mean y: 2953064.56640625
[2025-11-30 06:42:52] 2025-11-30 05:42:19,725 | INFO     | intersect: -24824916506.258236
[2025-11-30 06:42:52] 2025-11-30 05:42:19,725 | INFO     | chi2: 1.499154219402859
[2025-11-30 06:42:52] 2025-11-30 05:42:19,725 | INFO     | current chi2=1.499154219402859 (change=48.02158989309077 %)
[2025-11-30 06:42:52] 2025-11-30 05:42:19,725 | INFO     | sum of square deviations: 4903347750.0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,726 | INFO     | sum of deviations: 60165111116.999985
[2025-11-30 06:42:52] 2025-11-30 05:42:19,726 | INFO     | mean x: 1764473678.0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,726 | INFO     | mean y: 2959709.561752988
[2025-11-30 06:42:52] 2025-11-30 05:42:19,726 | INFO     | intersect: -21647504486.02618
[2025-11-30 06:42:52] 2025-11-30 05:42:19,727 | INFO     | chi2: 1.4735305558600138
[2025-11-30 06:42:52] 2025-11-30 05:42:19,727 | INFO     | current chi2=1.4735305558600138 (change=1.7092079794867048 %)
[2025-11-30 06:42:52] 2025-11-30 05:42:19,727 | INFO     | left removable region: 20
[2025-11-30 06:42:52] 2025-11-30 05:42:19,727 | INFO     | sum of square deviations: 3772712597.5
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | sum of deviations: 81336549293.99997
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | mean x: 1764473647.5
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | mean y: 2993939.347826087
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | intersect: -38037592004.82114
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | chi2: 0.024621444078256827
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | current memory leak: 21.56 B/s (using 230 data points, chi2=0.02)
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | could have reported an average CPU frequency of 2864 MHz (12 samples)
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | ..............................
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | . Timing measurements:
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | . get job = 0 s
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | . initial setup = 1 s
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | . payload setup = 2 s
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | . stage-in = 0 s
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | . payload execution = 15888 s
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | . stage-out = 1 s
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | . log creation = 0 s
[2025-11-30 06:42:52] 2025-11-30 05:42:19,728 | INFO     | ..............................
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | 
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | job summary report
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | --------------------------------------------------
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | PanDA job id: 6894266241
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | task id: 47533967
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | errors: (none)
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | pilot state: finished 
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | transexitcode: 0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | exeerrorcode: 0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | exeerrordiag: 
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | exitcode: 0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | exitmsg: OK
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | cpuconsumptiontime: 121224 s
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | nevents: 1000
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | neventsw: 0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | pid: 4333
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | pgrp: 4333
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | corecount: 8
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | event service: False
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | sizes: {0: 2284441, 2: 2284703, 11: 2284731, 15895: 2317007, 15896: 2326031, 15899: 2326087, 15903: 2326461}
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | --------------------------------------------------
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | 
[2025-11-30 06:42:52] 2025-11-30 05:42:19,873 | INFO     | executing command: ls -lF /tmp/job_10935089/atlas/pilot/slots/0
[2025-11-30 06:42:52] 2025-11-30 05:42:19,883 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,883 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,883 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,883 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,883 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,883 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,883 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,883 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | job 6894266241 has completed (purged errors)
[2025-11-30 06:42:52] 2025-11-30 05:42:19,884 | INFO     | overall cleanup function is called
[2025-11-30 06:42:52] 2025-11-30 05:42:20,891 | INFO     | --- collectZombieJob: --- 10, [4333]
[2025-11-30 06:42:52] 2025-11-30 05:42:20,892 | INFO     | zombie collector waiting for pid 4333
[2025-11-30 06:42:52] 2025-11-30 05:42:20,892 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 06:42:52] 2025-11-30 05:42:20,892 | INFO     | collected zombie processes
[2025-11-30 06:42:52] 2025-11-30 05:42:20,892 | INFO     | will attempt to kill all subprocesses of pid=4333
[2025-11-30 06:42:52] 2025-11-30 05:42:20,993 | INFO     | process IDs to be killed: [4333] (in reverse order)
[2025-11-30 06:42:52] 2025-11-30 05:42:21,035 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 06:42:52] 2025-11-30 05:42:21,035 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 06:42:52] 2025-11-30 05:42:21,039 | INFO     | did not find any defunct processes belonging to 4333
[2025-11-30 06:42:52] 2025-11-30 05:42:21,042 | INFO     | did not find any defunct processes belonging to 4333
[2025-11-30 06:42:52] 2025-11-30 05:42:21,042 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 06:42:52] 2025-11-30 05:42:21,042 | INFO     | ready for new job
[2025-11-30 06:42:52] 2025-11-30 05:42:21,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 06:42:52] 2025-11-30 05:42:21,043 | INFO     | ***************************************
[2025-11-30 06:42:52] 2025-11-30 05:42:21,043 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 06:42:52] 2025-11-30 05:42:21,043 | INFO     | ***************************************
[2025-11-30 06:42:52] 2025-11-30 05:42:21,043 | INFO     | 
[2025-11-30 06:42:52] 2025-11-30 05:42:21,057 | INFO     | architecture information:
[2025-11-30 06:42:52] 2025-11-30 05:42:21,057 | INFO     | executing command: cat /etc/os-release
[2025-11-30 06:42:52] 2025-11-30 05:42:21,064 | INFO     | cat /etc/os-release:
[2025-11-30 06:42:52] NAME="CentOS Linux"
[2025-11-30 06:42:52] VERSION="7 (Core)"
[2025-11-30 06:42:52] ID="centos"
[2025-11-30 06:42:52] ID_LIKE="rhel fedora"
[2025-11-30 06:42:52] VERSION_ID="7"
[2025-11-30 06:42:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 06:42:52] ANSI_COLOR="0;31"
[2025-11-30 06:42:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 06:42:52] HOME_URL="https://www.centos.org/"
[2025-11-30 06:42:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 06:42:52] 
[2025-11-30 06:42:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 06:42:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 06:42:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 06:42:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 06:42:52] 
[2025-11-30 06:42:52] 2025-11-30 05:42:21,064 | INFO     | ***************************************
[2025-11-30 06:42:52] 2025-11-30 05:42:21,567 | INFO     | executing command: df -mP /tmp/job_10935089/atlas/pilot/slots/0
[2025-11-30 06:42:52] 2025-11-30 05:42:21,574 | INFO     | sufficient remaining disk space (220256534528 B)
[2025-11-30 06:42:52] 2025-11-30 05:42:21,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 06:42:52] 2025-11-30 05:42:21,574 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 06:42:52] 2025-11-30 05:42:21,574 | INFO     | update_server=False
[2025-11-30 06:42:52] 2025-11-30 05:42:21,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 06:42:52] 2025-11-30 05:42:21,574 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 06:42:52] 2025-11-30 05:42:21,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 06:42:52] 2025-11-30 05:42:21,574 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 06:42:52] 2025-11-30 05:42:21,955 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 06:42:52] 2025-11-30 05:42:21,955 | INFO     | aborting loop
[2025-11-30 06:42:52] 2025-11-30 05:42:22,027 | INFO     | all job control threads have been joined
[2025-11-30 06:42:52] 2025-11-30 05:42:22,106 | INFO     | all data control threads have been joined
[2025-11-30 06:42:52] 2025-11-30 05:42:22,184 | INFO     | all payload control threads have been joined
[2025-11-30 06:42:52] 2025-11-30 05:42:22,579 | INFO     | [job] queue monitor thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:22,579 | INFO     | [job] retrieve thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:22,659 | INFO     | [data] copytool_in thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:22,960 | INFO     | [job] job monitor thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:23,032 | INFO     | [job] control thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:23,067 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:23,111 | INFO     | [data] control thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:23,189 | INFO     | [payload] control thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:23,367 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:23,463 | INFO     | [payload] failed_post thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:23,580 | INFO     | [data] copytool_out thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:23,872 | INFO     | [job] validate thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:24,001 | INFO     | [payload] validate_post thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:24,029 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:24,079 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:25,580 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 06:42:52] 2025-11-30 05:42:29,848 | INFO     | [monitor] cgroup control has ended
[2025-11-30 06:42:52] 2025-11-30 05:42:31,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-11-30 06:42:52] 2025-11-30 05:42:36,384 | INFO     | all workflow threads have been joined
[2025-11-30 06:42:52] 2025-11-30 05:42:36,384 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 06:42:52] 2025-11-30 05:42:36,384 | INFO     | traces error code: 0
[2025-11-30 06:42:52] 2025-11-30 05:42:36,385 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 06:42:52] 2025-11-30 05:42:52,390 | INFO     | PID=16083 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 06:42:52] 2025-11-30 05:42:52,391 | INFO     | .. there are 4 such processes running
[2025-11-30 06:42:52] 2025-11-30 05:42:52,391 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 06:42:52] 2025-11-30 05:42:52,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 06:42:52] 2025-11-30 05:42:52,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 06:42:52] 2025-11-30 05:42:52,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 06:42:52] 2025-11-30 05:42:52,391 | INFO     | [monitor] control thread has ended
[2025-11-30 06:42:52] 2025-11-30 05:42:52,447 [wrapper] ==== pilot stdout END ====
[2025-11-30 06:42:52] 2025-11-30 05:42:52,449 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 06:42:52] 2025-11-30 05:42:52,450 [wrapper] pilotpid: 16083
[2025-11-30 06:42:52] 2025-11-30 05:42:52,451 [wrapper] Pilot exit status: 0
[2025-11-30 06:42:52] 2025-11-30 05:42:52,455 [wrapper] pandaids: 6894266241
[2025-11-30 06:42:52] 2025-11-30 05:42:52,480 [wrapper] cleanup supervisor_pilot 20117 16084
[2025-11-30 06:42:52] 2025-11-30 05:42:52,481 [wrapper] Test setup, not cleaning
[2025-11-30 06:42:52] 2025-11-30 05:42:52,482 [wrapper] apfmon messages muted
[2025-11-30 06:42:52] 2025-11-30 05:42:52,483 [wrapper] ==== wrapper stdout END ====
[2025-11-30 06:42:52] 2025-11-30 05:42:52,484 [wrapper] ==== wrapper stderr END ====
[2025-11-30 06:42:52]  *** Error codes and diagnostics ***
[2025-11-30 06:42:52]     "exeErrorCode": 0,
[2025-11-30 06:42:52]     "exeErrorDiag": "",
[2025-11-30 06:42:52]     "pilotErrorCode": 0,
[2025-11-30 06:42:52]     "pilotErrorDiag": "",
[2025-11-30 06:42:52]  *** Listing of results directory ***
[2025-11-30 06:42:52] total 1307988
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user    576529 Nov 21 06:09 pilot3.tar.gz
[2025-11-30 06:42:52] -rwx------ 1 mf493845 unix-user     36292 Nov 21 06:13 runpilot2-wrapper.sh
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user      5112 Nov 21 06:13 queuedata.json
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user       100 Nov 30 00:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 06:42:52] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 30 00:32 run_atlas
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user       105 Nov 30 00:32 job.xml
[2025-11-30 06:42:52] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 30 02:16 start_atlas.sh
[2025-11-30 06:42:52] drwxrwx--x 2 mf493845 unix-user       100 Nov 30 02:16 shared
[2025-11-30 06:42:52] -rw-r--r-- 2 mf493845 unix-user    590106 Nov 30 02:16 input.tar.gz
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user      6390 Nov 30 02:16 init_data.xml
[2025-11-30 06:42:52] -rw-r--r-- 2 mf493845 unix-user 410494712 Nov 30 02:16 EVNT.47493127._002228.pool.root.1
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user         0 Nov 30 02:16 boinc_setup_complete
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user      8192 Nov 30 02:16 boinc_mmap_file
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user         0 Nov 30 02:16 boinc_lockfile
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user      2786 Nov 30 02:16 pandaJob.out
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user    991828 Nov 30 02:17 agis_schedconf.cvmfs.json
[2025-11-30 06:42:52] drwx------ 5 mf493845 unix-user       440 Nov 30 02:17 pilot3
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user 917303243 Nov 30 06:41 HITS.47533967._002000.pool.root.1
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user        95 Nov 30 06:42 pilot_heartbeat.json
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user      1027 Nov 30 06:42 memory_monitor_summary.json
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user   1516240 Nov 30 06:42 agis_ddmendpoints.agis.ALL.json
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user   1559484 Nov 30 06:42 log.47533967._002000.job.log.tgz.1
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user      8587 Nov 30 06:42 heartbeat.json
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user       820 Nov 30 06:42 pilotlog.txt
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user   2287665 Nov 30 06:42 log.47533967._002000.job.log.1
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user       353 Nov 30 06:42 output.list
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user       620 Nov 30 06:42 runtime_log
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user   3870720 Nov 30 06:42 result.tar.gz
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user      9221 Nov 30 06:42 runtime_log.err
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user       650 Nov 30 06:42 GypKDmadYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoLHKDmy5dPen.diag
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user     21659 Nov 30 06:42 stderr.txt
[2025-11-30 06:42:52] HITS file was successfully produced:
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user 917303243 Nov 30 06:41 shared/HITS.pool.root.1
[2025-11-30 06:42:52]  *** Contents of shared directory: ***
[2025-11-30 06:42:52] total 1301056
[2025-11-30 06:42:52] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 30 02:16 start_atlas.sh
[2025-11-30 06:42:52] -rw-r--r-- 2 mf493845 unix-user    590106 Nov 30 02:16 input.tar.gz
[2025-11-30 06:42:52] -rw-r--r-- 2 mf493845 unix-user 410494712 Nov 30 02:16 ATLAS.root_0
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user 917303243 Nov 30 06:41 HITS.pool.root.1
[2025-11-30 06:42:52] -rw------- 1 mf493845 unix-user   3870720 Nov 30 06:42 result.tar.gz
06:42:54 (8993): run_atlas exited; CPU time 121399.511866
06:42:54 (8993): called boinc_finish(0)

</stderr_txt>
]]>

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