Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:00:54 (31292): wrapper (7.7.26015): starting
21:00:54 (31292): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 21:00:54] Arguments: --nthreads 8
[2025-12-01 21:00:54] Threads: 8
[2025-12-01 21:00:54] Checking for CVMFS
[2025-12-01 21:00:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 21:00:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 21:00:55] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 21:00:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 21:00:56] 2.11.2.0 21112 179828 138440 153530 0 85 15687369 25165824 2504 130560 9 56644227 99.883 30129193 2095 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 21:00:56] CVMFS is ok
[2025-12-01 21:00:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 21:00:56] Checking for apptainer binary...
[2025-12-01 21:00:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 21:00:56] Running /usr/bin/apptainer --version
[2025-12-01 21:00:57] apptainer version 1.3.2-1.el7
[2025-12-01 21:00:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 21:01:19] cg-vwn263.simple-grid.lan
[2025-12-01 21:01:19] apptainer works
[2025-12-01 21:01:19] Set ATHENA_PROC_NUMBER=8
[2025-12-01 21:01:19] Set ATHENA_CORE_NUMBER=8
[2025-12-01 21:01:19] Starting ATLAS job with PandaID=6900587834
[2025-12-01 21:01:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 20:13:23]  *** The last 200 lines of the pilot log: ***
[2025-12-02 20:13:23] 2025-12-02 19:12:11,198 | INFO     | time since job start (83243s) is within the limit (172800.0s)
[2025-12-02 20:13:23] 2025-12-02 19:12:12,691 | INFO     | monitor loop #5614: job 0:6900587834 is in state 'finished'
[2025-12-02 20:13:23] 2025-12-02 19:12:12,691 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:13:23] 2025-12-02 19:12:13,211 | INFO     | time since job start (83245s) is within the limit (172800.0s)
[2025-12-02 20:13:23] 2025-12-02 19:12:15,203 | INFO     | monitor loop #5615: job 0:6900587834 is in state 'finished'
[2025-12-02 20:13:23] 2025-12-02 19:12:15,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:13:23] 2025-12-02 19:12:15,218 | INFO     | time since job start (83247s) is within the limit (172800.0s)
[2025-12-02 20:13:23] 2025-12-02 19:12:17,226 | INFO     | time since job start (83249s) is within the limit (172800.0s)
[2025-12-02 20:13:23] 2025-12-02 19:12:17,717 | INFO     | monitor loop #5616: job 0:6900587834 is in state 'finished'
[2025-12-02 20:13:23] 2025-12-02 19:12:17,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:13:23] 2025-12-02 19:12:19,233 | INFO     | time since job start (83251s) is within the limit (172800.0s)
[2025-12-02 20:13:23] 2025-12-02 19:12:20,224 | INFO     | monitor loop #5617: job 0:6900587834 is in state 'finished'
[2025-12-02 20:13:23] 2025-12-02 19:12:20,224 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:13:23] 2025-12-02 19:12:21,240 | INFO     | time since job start (83253s) is within the limit (172800.0s)
[2025-12-02 20:13:23] 2025-12-02 19:12:21,765 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 20:13:23] 2025-12-02 19:12:21,766 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-02 20:13:23] 2025-12-02 19:12:21,768 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6900587834/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 20:13:23] 2025-12-02 19:12:21,768 | INFO     | extracted standard info from prmon json
[2025-12-02 20:13:23] 2025-12-02 19:12:21,769 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 20:13:23] 2025-12-02 19:12:21,769 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 20:13:23] 2025-12-02 19:12:21,793 | INFO     | fitting pss+swap vs Time
[2025-12-02 20:13:23] 2025-12-02 19:12:21,795 | INFO     | sum of square deviations: 771428494792.0879
[2025-12-02 20:13:23] 2025-12-02 19:12:21,860 | INFO     | sum of deviations: 2672047491397.596
[2025-12-02 20:13:23] 2025-12-02 19:12:21,860 | INFO     | mean x: 1764661294.1328413
[2025-12-02 20:13:23] 2025-12-02 19:12:21,860 | INFO     | mean y: 2832856.896678967
[2025-12-02 20:13:23] 2025-12-02 19:12:21,860 | INFO     | intersect: -6109540248.305937
[2025-12-02 20:13:23] 2025-12-02 19:12:21,862 | INFO     | chi2: 24.72140706865036
[2025-12-02 20:13:23] 2025-12-02 19:12:21,864 | INFO     | sum of square deviations: 762920626688.1471
[2025-12-02 20:13:23] 2025-12-02 19:12:21,912 | INFO     | sum of deviations: 3129733778332.439
[2025-12-02 20:13:23] 2025-12-02 19:12:21,912 | INFO     | mean x: 1764661141.637037
[2025-12-02 20:13:23] 2025-12-02 19:12:21,912 | INFO     | mean y: 2841059.9192592595
[2025-12-02 20:13:23] 2025-12-02 19:12:21,912 | INFO     | intersect: -7236338730.339156
[2025-12-02 20:13:23] 2025-12-02 19:12:21,914 | INFO     | chi2: 21.38096618743368
[2025-12-02 20:13:23] 2025-12-02 19:12:21,914 | INFO     | current chi2=21.38096618743368 (change=13.512341235029268 %)
[2025-12-02 20:13:23] 2025-12-02 19:12:21,914 | INFO     | right removable region: 1349
[2025-12-02 20:13:23] 2025-12-02 19:12:21,916 | INFO     | sum of square deviations: 762919690338.1477
[2025-12-02 20:13:23] 2025-12-02 19:12:21,965 | INFO     | sum of deviations: 2094275037030.9336
[2025-12-02 20:13:23] 2025-12-02 19:12:21,965 | INFO     | mean x: 1764661446.637037
[2025-12-02 20:13:23] 2025-12-02 19:12:21,965 | INFO     | mean y: 2843212.065185185
[2025-12-02 20:13:23] 2025-12-02 19:12:21,965 | INFO     | intersect: -4841292367.742446
[2025-12-02 20:13:23] 2025-12-02 19:12:21,967 | INFO     | chi2: 19.796132546156688
[2025-12-02 20:13:23] 2025-12-02 19:12:21,967 | INFO     | current chi2=19.796132546156688 (change=19.92311565768236 %)
[2025-12-02 20:13:23] 2025-12-02 19:12:21,967 | INFO     | left removable region: 10
[2025-12-02 20:13:23] 2025-12-02 19:12:21,969 | INFO     | sum of square deviations: 744422144111.3102
[2025-12-02 20:13:23] 2025-12-02 19:12:22,016 | INFO     | sum of deviations: 2172212299040.204
[2025-12-02 20:13:23] 2025-12-02 19:12:22,016 | INFO     | mean x: 1764661416.1463778
[2025-12-02 20:13:23] 2025-12-02 19:12:22,016 | INFO     | mean y: 2862017.4734876775
[2025-12-02 20:13:23] 2025-12-02 19:12:22,016 | INFO     | intersect: -5146392692.528397
[2025-12-02 20:13:23] 2025-12-02 19:12:22,018 | INFO     | chi2: 12.328813721159934
[2025-12-02 20:13:23] 2025-12-02 19:12:22,018 | INFO     | current memory leak: 2.92 B/s (using 1339 data points, chi2=12.33)
[2025-12-02 20:13:23] 2025-12-02 19:12:22,019 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-12-02 20:13:23] 2025-12-02 19:12:22,020 | INFO     | ..............................
[2025-12-02 20:13:23] 2025-12-02 19:12:22,020 | INFO     | . Timing measurements:
[2025-12-02 20:13:23] 2025-12-02 19:12:22,020 | INFO     | . get job = 0 s
[2025-12-02 20:13:23] 2025-12-02 19:12:22,020 | INFO     | . initial setup = 7 s
[2025-12-02 20:13:23] 2025-12-02 19:12:22,020 | INFO     | . payload setup = 152 s
[2025-12-02 20:13:23] 2025-12-02 19:12:22,020 | INFO     | . stage-in = 0 s
[2025-12-02 20:13:23] 2025-12-02 19:12:22,020 | INFO     | . payload execution = 82804 s
[2025-12-02 20:13:23] 2025-12-02 19:12:22,020 | INFO     | . stage-out = 8 s
[2025-12-02 20:13:23] 2025-12-02 19:12:22,020 | INFO     | . log creation = 2 s
[2025-12-02 20:13:23] 2025-12-02 19:12:22,020 | INFO     | ..............................
[2025-12-02 20:13:23] 2025-12-02 19:12:22,137 | INFO     | 
[2025-12-02 20:13:23] 2025-12-02 19:12:22,138 | INFO     | job summary report
[2025-12-02 20:13:23] 2025-12-02 19:12:22,138 | INFO     | --------------------------------------------------
[2025-12-02 20:13:23] 2025-12-02 19:12:22,138 | INFO     | PanDA job id: 6900587834
[2025-12-02 20:13:23] 2025-12-02 19:12:22,138 | INFO     | task id: 47556185
[2025-12-02 20:13:23] 2025-12-02 19:12:22,138 | INFO     | errors: (none)
[2025-12-02 20:13:23] 2025-12-02 19:12:22,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 20:13:23] 2025-12-02 19:12:22,138 | INFO     | pilot state: finished 
[2025-12-02 20:13:23] 2025-12-02 19:12:22,138 | INFO     | transexitcode: 0
[2025-12-02 20:13:23] 2025-12-02 19:12:22,138 | INFO     | exeerrorcode: 0
[2025-12-02 20:13:23] 2025-12-02 19:12:22,138 | INFO     | exeerrordiag: 
[2025-12-02 20:13:23] 2025-12-02 19:12:22,138 | INFO     | exitcode: 0
[2025-12-02 20:13:23] 2025-12-02 19:12:22,138 | INFO     | exitmsg: OK
[2025-12-02 20:13:23] 2025-12-02 19:12:22,139 | INFO     | cpuconsumptiontime: 308358 s
[2025-12-02 20:13:23] 2025-12-02 19:12:22,139 | INFO     | nevents: 1000
[2025-12-02 20:13:23] 2025-12-02 19:12:22,139 | INFO     | neventsw: 0
[2025-12-02 20:13:23] 2025-12-02 19:12:22,139 | INFO     | pid: 9332
[2025-12-02 20:13:23] 2025-12-02 19:12:22,139 | INFO     | pgrp: 9332
[2025-12-02 20:13:23] 2025-12-02 19:12:22,139 | INFO     | corecount: 8
[2025-12-02 20:13:23] 2025-12-02 19:12:22,139 | INFO     | event service: False
[2025-12-02 20:13:23] 2025-12-02 19:12:22,139 | INFO     | sizes: {0: 2283489, 1: 2284175, 2: 2284374, 13: 2284374, 23: 2284430, 34: 2284458, 45: 2284614, 56: 2284642, 66: 2284670, 77: 2284698, 88: 2284754, 93: 2285324, 99
[2025-12-02 20:13:23] 2025-12-02 19:12:22,139 | INFO     | --------------------------------------------------
[2025-12-02 20:13:23] 2025-12-02 19:12:22,139 | INFO     | 
[2025-12-02 20:13:23] 2025-12-02 19:12:22,139 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-12-02 20:13:23] 2025-12-02 19:12:22,325 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,325 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,325 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,325 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,325 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,326 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,326 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,326 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,326 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,326 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,326 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,326 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,326 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,326 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,326 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,326 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,327 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,327 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 20:13:23] 2025-12-02 19:12:22,327 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,327 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 20:13:23] 2025-12-02 19:12:22,327 | INFO     | job 6900587834 has completed (purged errors)
[2025-12-02 20:13:23] 2025-12-02 19:12:22,327 | INFO     | overall cleanup function is called
[2025-12-02 20:13:23] 2025-12-02 19:12:23,344 | INFO     | --- collectZombieJob: --- 10, [9332]
[2025-12-02 20:13:23] 2025-12-02 19:12:23,344 | INFO     | zombie collector waiting for pid 9332
[2025-12-02 20:13:23] 2025-12-02 19:12:23,345 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 20:13:23] 2025-12-02 19:12:23,345 | INFO     | collected zombie processes
[2025-12-02 20:13:23] 2025-12-02 19:12:23,345 | INFO     | will attempt to kill all subprocesses of pid=9332
[2025-12-02 20:13:23] 2025-12-02 19:12:23,471 | INFO     | process IDs to be killed: [9332] (in reverse order)
[2025-12-02 20:13:23] 2025-12-02 19:12:24,124 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 20:13:23] 2025-12-02 19:12:24,125 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 20:13:23] 2025-12-02 19:12:24,135 | INFO     | did not find any defunct processes belonging to 9332
[2025-12-02 20:13:23] 2025-12-02 19:12:24,138 | INFO     | did not find any defunct processes belonging to 9332
[2025-12-02 20:13:23] 2025-12-02 19:12:24,186 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 20:13:23] 2025-12-02 19:12:24,187 | INFO     | ready for new job
[2025-12-02 20:13:23] 2025-12-02 19:12:24,187 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 20:13:23] 2025-12-02 19:12:24,192 | INFO     | ***************************************
[2025-12-02 20:13:23] 2025-12-02 19:12:24,192 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 20:13:23] 2025-12-02 19:12:24,192 | INFO     | ***************************************
[2025-12-02 20:13:23] 2025-12-02 19:12:24,192 | INFO     | 
[2025-12-02 20:13:23] 2025-12-02 19:12:24,193 | INFO     | pilot is running in a VM
[2025-12-02 20:13:23] 2025-12-02 19:12:24,193 | INFO     | architecture information:
[2025-12-02 20:13:23] 2025-12-02 19:12:24,204 | INFO     | executing command: cat /etc/os-release
[2025-12-02 20:13:23] 2025-12-02 19:12:24,447 | INFO     | cat /etc/os-release:
[2025-12-02 20:13:23] NAME="CentOS Linux"
[2025-12-02 20:13:23] VERSION="7 (Core)"
[2025-12-02 20:13:23] ID="centos"
[2025-12-02 20:13:23] ID_LIKE="rhel fedora"
[2025-12-02 20:13:23] VERSION_ID="7"
[2025-12-02 20:13:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 20:13:23] ANSI_COLOR="0;31"
[2025-12-02 20:13:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 20:13:23] HOME_URL="https://www.centos.org/"
[2025-12-02 20:13:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 20:13:23] 
[2025-12-02 20:13:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 20:13:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 20:13:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 20:13:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 20:13:23] 
[2025-12-02 20:13:23] 2025-12-02 19:12:24,447 | INFO     | ***************************************
[2025-12-02 20:13:23] 2025-12-02 19:12:24,950 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-12-02 20:13:23] 2025-12-02 19:12:25,228 | INFO     | sufficient remaining disk space (489252978688 B)
[2025-12-02 20:13:23] 2025-12-02 19:12:25,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 20:13:23] 2025-12-02 19:12:25,228 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 20:13:23] 2025-12-02 19:12:25,228 | INFO     | update_server=False
[2025-12-02 20:13:23] 2025-12-02 19:12:25,229 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 20:13:23] 2025-12-02 19:12:25,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 20:13:23] 2025-12-02 19:12:25,239 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 20:13:23] 2025-12-02 19:12:25,239 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 20:13:23] 2025-12-02 19:12:25,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:13:23] 2025-12-02 19:12:25,240 | INFO     | will abort loop
[2025-12-02 20:13:23] 2025-12-02 19:12:25,977 | INFO     | all data control threads have been joined
[2025-12-02 20:13:23] 2025-12-02 19:12:26,207 | INFO     | all payload control threads have been joined
[2025-12-02 20:13:23] 2025-12-02 19:12:26,234 | INFO     | [job] retrieve thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:26,245 | INFO     | [job] job monitor thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:26,644 | INFO     | all job control threads have been joined
[2025-12-02 20:13:23] 2025-12-02 19:12:26,668 | INFO     | [payload] failed_post thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:26,673 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:26,698 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 20:13:23] 2025-12-02 19:12:26,976 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:26,983 | INFO     | [data] control thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:27,154 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:13:23] 2025-12-02 19:12:27,213 | INFO     | [payload] control thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:27,236 | INFO     | [data] copytool_out thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:27,259 | INFO     | [payload] validate_post thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:27,639 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:27,650 | INFO     | [job] control thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:27,654 | INFO     | [data] copytool_in thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:27,663 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:27,714 | INFO     | [job] validate thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:28,160 | INFO     | [job] queue monitor thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:30,707 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 20:13:23] 2025-12-02 19:12:54,465 | INFO     | PID=2709 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 20:13:23] 2025-12-02 19:12:54,465 | INFO     | .. there are 9 such processes running
[2025-12-02 20:13:23] 2025-12-02 19:12:54,467 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 20:13:23] 2025-12-02 19:12:54,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 20:13:23] 2025-12-02 19:12:54,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 20:13:23] 2025-12-02 19:13:12,982 | INFO     | [monitor] cgroup control has ended
[2025-12-02 20:13:23] 2025-12-02 19:13:15,072 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140636186068800)>', '<ExcThread(monitor, started 140635600312064)>']
[2025-12-02 20:13:23] 2025-12-02 19:13:15,593 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 20:13:23] 2025-12-02 19:13:15,593 | INFO     | [monitor] control thread has ended
[2025-12-02 20:13:23] 2025-12-02 19:13:20,098 | INFO     | all workflow threads have been joined
[2025-12-02 20:13:23] 2025-12-02 19:13:20,098 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 20:13:23] 2025-12-02 19:13:20,099 | INFO     | traces error code: 0
[2025-12-02 20:13:23] 2025-12-02 19:13:20,099 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 20:13:23] 2025-12-02 19:13:20,410 [wrapper] ==== pilot stdout END ====
[2025-12-02 20:13:23] 2025-12-02 19:13:20,483 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 20:13:23] 2025-12-02 19:13:20,586 [wrapper] pilotpid: 2709
[2025-12-02 20:13:23] 2025-12-02 19:13:20,664 [wrapper] Pilot exit status: 0
[2025-12-02 20:13:23] 2025-12-02 19:13:21,069 [wrapper] pandaids: 6900587834
[2025-12-02 20:13:23] 2025-12-02 19:13:22,026 [wrapper] cleanup supervisor_pilot 21924 2710
[2025-12-02 20:13:23] 2025-12-02 19:13:22,101 [wrapper] Test setup, not cleaning
[2025-12-02 20:13:23] 2025-12-02 19:13:22,210 [wrapper] apfmon messages muted
[2025-12-02 20:13:23] 2025-12-02 19:13:22,313 [wrapper] ==== wrapper stdout END ====
[2025-12-02 20:13:23] 2025-12-02 19:13:22,420 [wrapper] ==== wrapper stderr END ====
[2025-12-02 20:13:23]  *** Error codes and diagnostics ***
[2025-12-02 20:13:23]     "exeErrorCode": 0,
[2025-12-02 20:13:23]     "exeErrorDiag": "",
[2025-12-02 20:13:23]     "pilotErrorCode": 0,
[2025-12-02 20:13:23]     "pilotErrorDiag": "",
[2025-12-02 20:13:23]  *** Listing of results directory ***
[2025-12-02 20:13:23] total 1312068
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc      5112 Nov 28 01:59 queuedata.json
[2025-12-02 20:13:23] -rwx------. 1 boinc boinc     36292 Nov 28 01:59 runpilot2-wrapper.sh
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc       100 Dec  1 21:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 20:13:23] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 21:00 run_atlas
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc       105 Dec  1 21:00 job.xml
[2025-12-02 20:13:23] -rw-r--r--. 2 boinc boinc 410480695 Dec  1 21:00 EVNT.47483658._004427.pool.root.1
[2025-12-02 20:13:23] -rw-r--r--. 2 boinc boinc    590109 Dec  1 21:00 input.tar.gz
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc      6392 Dec  1 21:00 init_data.xml
[2025-12-02 20:13:23] -rw-r--r--. 2 boinc boinc     15847 Dec  1 21:00 start_atlas.sh
[2025-12-02 20:13:23] drwxrwx--x. 2 boinc boinc        68 Dec  1 21:00 shared
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc         0 Dec  1 21:00 boinc_lockfile
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc      2788 Dec  1 21:01 pandaJob.out
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc    992004 Dec  1 21:04 agis_schedconf.cvmfs.json
[2025-12-02 20:13:23] drwx------. 5 boinc boinc      4096 Dec  1 21:04 pilot3
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc       533 Dec  2 19:43 boinc_task_state.xml
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc 902023821 Dec  2 20:09 HITS.47556185._001904.pool.root.1
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc      1033 Dec  2 20:10 memory_monitor_summary.json
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc   1516240 Dec  2 20:10 agis_ddmendpoints.agis.ALL.json
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc   2458044 Dec  2 20:10 log.47556185._001904.job.log.tgz.1
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc      8638 Dec  2 20:12 heartbeat.json
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc        95 Dec  2 20:12 pilot_heartbeat.json
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc      8192 Dec  2 20:13 boinc_mmap_file
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc        29 Dec  2 20:13 wrapper_checkpoint.txt
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc      5070 Dec  2 20:13 pilotlog.txt
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc  11112852 Dec  2 20:13 log.47556185._001904.job.log.1
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc       353 Dec  2 20:13 output.list
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc       620 Dec  2 20:13 runtime_log
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc  13588480 Dec  2 20:13 result.tar.gz
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc      8833 Dec  2 20:13 runtime_log.err
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc       662 Dec  2 20:13 nLSKDml01i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzwKKDmxRtNDo.diag
[2025-12-02 20:13:23] -rw-r--r--. 1 boinc boinc     21403 Dec  2 20:13 stderr.txt
[2025-12-02 20:13:23] HITS file was successfully produced:
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc 902023821 Dec  2 20:09 shared/HITS.pool.root.1
[2025-12-02 20:13:23]  *** Contents of shared directory: ***
[2025-12-02 20:13:23] total 1295616
[2025-12-02 20:13:23] -rw-r--r--. 2 boinc boinc 410480695 Dec  1 21:00 ATLAS.root_0
[2025-12-02 20:13:23] -rw-r--r--. 2 boinc boinc    590109 Dec  1 21:00 input.tar.gz
[2025-12-02 20:13:23] -rw-r--r--. 2 boinc boinc     15847 Dec  1 21:00 start_atlas.sh
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc 902023821 Dec  2 20:09 HITS.pool.root.1
[2025-12-02 20:13:23] -rw-------. 1 boinc boinc  13588480 Dec  2 20:13 result.tar.gz
20:13:25 (31292): run_atlas exited; CPU time 308990.875920
20:13:25 (31292): called boinc_finish(0)

</stderr_txt>
]]>

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