Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
14:19:37 (1074662): wrapper (7.7.26015): starting
14:19:37 (1074662): wrapper: running run_atlas (--nthreads 4)
[2025-11-29 14:19:37] Arguments: --nthreads 4
[2025-11-29 14:19:37] Threads: 4
[2025-11-29 14:19:37] Checking for CVMFS
[2025-11-29 14:19:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 14:19:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 14:19:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 14:19:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 14:19:37] 2.13.2.0 774864 9039 66876 153456 0 81 2742542 4096000 5100 130560 0 26396386 99.969 966133 1072 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-29 14:19:37] CVMFS is ok
[2025-11-29 14:19:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 14:19:37] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-29 14:19:37] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-29 14:19:37] Further information can be found at the LHC@home message board.
[2025-11-29 14:19:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 14:19:37] Checking for apptainer binary...
[2025-11-29 14:19:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 14:19:37] Running /usr/bin/apptainer --version
[2025-11-29 14:19:37] apptainer version 1.4.3
[2025-11-29 14:19:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 14:19:37] msi670e
[2025-11-29 14:19:37] apptainer works
[2025-11-29 14:19:37] Set ATHENA_PROC_NUMBER=4
[2025-11-29 14:19:37] Set ATHENA_CORE_NUMBER=4
[2025-11-29 14:19:37] Starting ATLAS job with PandaID=6893857907
[2025-11-29 14:19:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 20:49:47]  *** The last 200 lines of the pilot log: ***
[2025-11-29 20:49:47] 2025-11-30 03:49:13,019 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-29 20:49:47] 2025-11-30 03:49:13,893 | INFO     | time since job start (23369s) is within the limit (172800.0s)
[2025-11-29 20:49:47] 2025-11-30 03:49:14,967 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-29 20:49:47] 2025-11-30 03:49:14,969 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 5075.671718750001
[2025-11-29 20:49:47] 2025-11-30 03:49:14,972 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6893857907/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 20:49:47] 2025-11-30 03:49:14,972 | INFO     | extracted standard info from prmon json
[2025-11-29 20:49:47] 2025-11-30 03:49:14,972 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 20:49:47] 2025-11-30 03:49:14,972 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 20:49:47] 2025-11-30 03:49:14,975 | INFO     | fitting pss+swap vs Time
[2025-11-29 20:49:47] 2025-11-30 03:49:14,975 | INFO     | sum of square deviations: 17420948032.0
[2025-11-29 20:49:47] 2025-11-30 03:49:14,977 | INFO     | sum of deviations: 20760351795.99999
[2025-11-29 20:49:47] 2025-11-30 03:49:14,977 | INFO     | mean x: 1764462853.0
[2025-11-29 20:49:47] 2025-11-30 03:49:14,977 | INFO     | mean y: 2261700.5221932116
[2025-11-29 20:49:47] 2025-11-30 03:49:14,977 | INFO     | intersect: -2100429237.5351217
[2025-11-29 20:49:47] 2025-11-30 03:49:14,977 | INFO     | chi2: 3.5608224413624368
[2025-11-29 20:49:47] 2025-11-30 03:49:14,977 | INFO     | sum of square deviations: 16747530754.5
[2025-11-29 20:49:47] 2025-11-30 03:49:14,979 | INFO     | sum of deviations: 93143638381.50002
[2025-11-29 20:49:47] 2025-11-30 03:49:14,979 | INFO     | mean x: 1764462700.5
[2025-11-29 20:49:47] 2025-11-30 03:49:14,979 | INFO     | mean y: 2278050.002645503
[2025-11-29 20:49:47] 2025-11-30 03:49:14,979 | INFO     | intersect: -9811017899.24391
[2025-11-29 20:49:47] 2025-11-30 03:49:14,979 | INFO     | chi2: 1.6023283827842536
[2025-11-29 20:49:47] 2025-11-30 03:49:14,979 | INFO     | current chi2=1.6023283827842536 (change=55.0011715222966 %)
[2025-11-29 20:49:47] 2025-11-30 03:49:14,979 | INFO     | sum of square deviations: 16091695202.0
[2025-11-29 20:49:47] 2025-11-30 03:49:14,981 | INFO     | sum of deviations: 90330071971.99998
[2025-11-29 20:49:47] 2025-11-30 03:49:14,981 | INFO     | mean x: 1764462548.0
[2025-11-29 20:49:47] 2025-11-30 03:49:14,981 | INFO     | mean y: 2277396.144772118
[2025-11-29 20:49:47] 2025-11-30 03:49:14,981 | INFO     | intersect: -9902460852.497236
[2025-11-29 20:49:47] 2025-11-30 03:49:14,981 | INFO     | chi2: 1.602639352375022
[2025-11-29 20:49:47] 2025-11-30 03:49:14,981 | INFO     | current chi2=1.602639352375022 (change=-0.019407357075459333 %)
[2025-11-29 20:49:47] 2025-11-30 03:49:14,981 | INFO     | right removable region: 372
[2025-11-29 20:49:47] 2025-11-30 03:49:14,981 | INFO     | sum of square deviations: 16747530754.5
[2025-11-29 20:49:47] 2025-11-30 03:49:14,983 | INFO     | sum of deviations: -33785365785.500008
[2025-11-29 20:49:47] 2025-11-30 03:49:14,983 | INFO     | mean x: 1764463005.5
[2025-11-29 20:49:47] 2025-11-30 03:49:14,983 | INFO     | mean y: 2273976.8386243386
[2025-11-29 20:49:47] 2025-11-30 03:49:14,983 | INFO     | intersect: 3561785461.227594
[2025-11-29 20:49:47] 2025-11-30 03:49:14,983 | INFO     | chi2: 2.078433670046188
[2025-11-29 20:49:47] 2025-11-30 03:49:14,983 | INFO     | current chi2=2.078433670046188 (change=41.630516424993644 %)
[2025-11-29 20:49:47] 2025-11-30 03:49:14,983 | INFO     | sum of square deviations: 16091695202.0
[2025-11-29 20:49:47] 2025-11-30 03:49:14,985 | INFO     | sum of deviations: -34927513102.0
[2025-11-29 20:49:47] 2025-11-30 03:49:14,985 | INFO     | mean x: 1764463158.0
[2025-11-29 20:49:47] 2025-11-30 03:49:14,985 | INFO     | mean y: 2274240.780160858
[2025-11-29 20:49:47] 2025-11-30 03:49:14,985 | INFO     | intersect: 3832095107.71913
[2025-11-29 20:49:47] 2025-11-30 03:49:14,985 | INFO     | chi2: 2.0781207082499806
[2025-11-29 20:49:47] 2025-11-30 03:49:14,985 | INFO     | current chi2=2.0781207082499806 (change=0.015057579210610891 %)
[2025-11-29 20:49:47] 2025-11-30 03:49:14,985 | INFO     | left removable region: 20
[2025-11-29 20:49:47] 2025-11-30 03:49:14,985 | INFO     | sum of square deviations: 13523929848.0
[2025-11-29 20:49:47] 2025-11-30 03:49:14,987 | INFO     | sum of deviations: 34741602182.0
[2025-11-29 20:49:47] 2025-11-30 03:49:14,987 | INFO     | mean x: 1764463127.5
[2025-11-29 20:49:47] 2025-11-30 03:49:14,987 | INFO     | mean y: 2290413.2670454546
[2025-11-29 20:49:47] 2025-11-30 03:49:14,987 | INFO     | intersect: -4530436148.4193125
[2025-11-29 20:49:47] 2025-11-30 03:49:14,987 | INFO     | chi2: 0.09131177520279435
[2025-11-29 20:49:47] 2025-11-30 03:49:14,987 | INFO     | current memory leak: 2.57 B/s (using 352 data points, chi2=0.09)
[2025-11-29 20:49:47] 2025-11-30 03:49:14,987 | INFO     | could have reported an average CPU frequency of 5006 MHz (16 samples)
[2025-11-29 20:49:47] 2025-11-30 03:49:14,987 | INFO     | ..............................
[2025-11-29 20:49:47] 2025-11-30 03:49:14,988 | INFO     | . Timing measurements:
[2025-11-29 20:49:47] 2025-11-30 03:49:14,988 | INFO     | . get job = 0 s
[2025-11-29 20:49:47] 2025-11-30 03:49:14,988 | INFO     | . initial setup = 2 s
[2025-11-29 20:49:47] 2025-11-30 03:49:14,988 | INFO     | . payload setup = 2 s
[2025-11-29 20:49:47] 2025-11-30 03:49:14,988 | INFO     | . stage-in = 0 s
[2025-11-29 20:49:47] 2025-11-30 03:49:14,988 | INFO     | . payload execution = 23343 s
[2025-11-29 20:49:47] 2025-11-30 03:49:14,988 | INFO     | . stage-out = 3 s
[2025-11-29 20:49:47] 2025-11-30 03:49:14,988 | INFO     | . log creation = 0 s
[2025-11-29 20:49:47] 2025-11-30 03:49:14,988 | INFO     | ..............................
[2025-11-29 20:49:47] 2025-11-30 03:49:15,027 | INFO     | 
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | job summary report
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | --------------------------------------------------
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | PanDA job id: 6893857907
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | task id: 47523449
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | errors: (none)
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | pilot state: finished 
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | transexitcode: 0
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | exeerrorcode: 0
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | exeerrordiag: 
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | exitcode: 0
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | exitmsg: OK
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | cpuconsumptiontime: 92240 s
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | nevents: 1000
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | neventsw: 0
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | pid: 1085187
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | pgrp: 1085187
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | corecount: 4
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | event service: False
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | sizes: {0: 2284322, 2: 2284584, 11: 2284612, 23349: 2320631, 23353: 2329667, 23355: 2329723, 23358: 2330097}
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | --------------------------------------------------
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | 
[2025-11-29 20:49:47] 2025-11-30 03:49:15,028 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-11-29 20:49:47] 2025-11-30 03:49:15,040 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,040 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,040 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,040 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,040 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,040 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,040 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,040 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,040 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,040 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,040 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,040 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,041 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,041 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,041 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,041 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,041 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,041 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 20:49:47] 2025-11-30 03:49:15,041 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,041 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 20:49:47] 2025-11-30 03:49:15,041 | INFO     | job 6893857907 has completed (purged errors)
[2025-11-29 20:49:47] 2025-11-30 03:49:15,041 | INFO     | overall cleanup function is called
[2025-11-29 20:49:47] 2025-11-30 03:49:16,050 | INFO     | --- collectZombieJob: --- 10, [1085187]
[2025-11-29 20:49:47] 2025-11-30 03:49:16,050 | INFO     | zombie collector waiting for pid 1085187
[2025-11-29 20:49:47] 2025-11-30 03:49:16,050 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 20:49:47] 2025-11-30 03:49:16,050 | INFO     | collected zombie processes
[2025-11-29 20:49:47] 2025-11-30 03:49:16,050 | INFO     | will attempt to kill all subprocesses of pid=1085187
[2025-11-29 20:49:47] 2025-11-30 03:49:16,129 | INFO     | process IDs to be killed: [1085187] (in reverse order)
[2025-11-29 20:49:47] 2025-11-30 03:49:16,167 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 20:49:47] 2025-11-30 03:49:16,167 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 20:49:47] 2025-11-30 03:49:16,170 | INFO     | did not find any defunct processes belonging to 1085187
[2025-11-29 20:49:47] 2025-11-30 03:49:16,172 | INFO     | did not find any defunct processes belonging to 1085187
[2025-11-29 20:49:47] 2025-11-30 03:49:16,173 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 20:49:47] 2025-11-30 03:49:16,173 | INFO     | ready for new job
[2025-11-29 20:49:47] 2025-11-30 03:49:16,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 20:49:47] 2025-11-30 03:49:16,174 | INFO     | ***************************************
[2025-11-29 20:49:47] 2025-11-30 03:49:16,174 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 20:49:47] 2025-11-30 03:49:16,174 | INFO     | ***************************************
[2025-11-29 20:49:47] 2025-11-30 03:49:16,174 | INFO     | 
[2025-11-29 20:49:47] 2025-11-30 03:49:16,175 | INFO     | architecture information:
[2025-11-29 20:49:47] 2025-11-30 03:49:16,175 | INFO     | executing command: cat /etc/os-release
[2025-11-29 20:49:47] 2025-11-30 03:49:16,184 | INFO     | cat /etc/os-release:
[2025-11-29 20:49:47] NAME="CentOS Linux"
[2025-11-29 20:49:47] VERSION="7 (Core)"
[2025-11-29 20:49:47] ID="centos"
[2025-11-29 20:49:47] ID_LIKE="rhel fedora"
[2025-11-29 20:49:47] VERSION_ID="7"
[2025-11-29 20:49:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 20:49:47] ANSI_COLOR="0;31"
[2025-11-29 20:49:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 20:49:47] HOME_URL="https://www.centos.org/"
[2025-11-29 20:49:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 20:49:47] 
[2025-11-29 20:49:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 20:49:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 20:49:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 20:49:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 20:49:47] 
[2025-11-29 20:49:47] 2025-11-30 03:49:16,185 | INFO     | ***************************************
[2025-11-29 20:49:47] 2025-11-30 03:49:16,687 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-11-29 20:49:47] 2025-11-30 03:49:16,697 | INFO     | sufficient remaining disk space (438973759488 B)
[2025-11-29 20:49:47] 2025-11-30 03:49:16,697 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 20:49:47] 2025-11-30 03:49:16,697 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 20:49:47] 2025-11-30 03:49:16,697 | INFO     | update_server=False
[2025-11-29 20:49:47] 2025-11-30 03:49:16,697 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 20:49:47] 2025-11-30 03:49:16,697 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 20:49:47] 2025-11-30 03:49:16,698 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 20:49:47] 2025-11-30 03:49:16,698 | INFO     | aborting loop
[2025-11-29 20:49:47] 2025-11-30 03:49:16,960 | INFO     | all data control threads have been joined
[2025-11-29 20:49:47] 2025-11-30 03:49:17,412 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 20:49:47] 2025-11-30 03:49:17,702 | INFO     | [job] queue monitor thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:17,702 | INFO     | [job] retrieve thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:17,702 | INFO     | [job] job monitor thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:17,757 | INFO     | all payload control threads have been joined
[2025-11-29 20:49:47] 2025-11-30 03:49:17,824 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 20:49:47] 2025-11-30 03:49:17,965 | INFO     | [job] validate thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:17,965 | INFO     | [data] control thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:18,086 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:18,103 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:18,111 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:18,187 | INFO     | all job control threads have been joined
[2025-11-29 20:49:47] 2025-11-30 03:49:18,367 | INFO     | [payload] validate_post thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:18,687 | INFO     | [data] copytool_in thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:18,762 | INFO     | [payload] control thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:18,863 | INFO     | [payload] failed_post thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:19,119 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:19,192 | INFO     | [job] control thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:19,829 | INFO     | [data] copytool_out thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:21,417 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 20:49:47] 2025-11-30 03:49:22,543 | INFO     | [monitor] cgroup control has ended
[2025-11-29 20:49:47] 2025-11-30 03:49:24,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130592247805760)>', '<ExcThread(monitor, started 130591601178368)>']
[2025-11-29 20:49:47] 2025-11-30 03:49:29,312 | INFO     | all workflow threads have been joined
[2025-11-29 20:49:47] 2025-11-30 03:49:29,312 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 20:49:47] 2025-11-30 03:49:29,312 | INFO     | traces error code: 0
[2025-11-29 20:49:47] 2025-11-30 03:49:29,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 20:49:47] 2025-11-30 03:49:41,615 [wrapper] supervise_pilot (15 min periods counter: 27)
[2025-11-29 20:49:47] 2025-11-30 03:49:47,042 | INFO     | PID=1078520 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 20:49:47] 2025-11-30 03:49:47,042 | INFO     | .. there are 7 such processes running
[2025-11-29 20:49:47] 2025-11-30 03:49:47,043 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 20:49:47] 2025-11-30 03:49:47,043 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 20:49:47] 2025-11-30 03:49:47,043 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 20:49:47] 2025-11-30 03:49:47,043 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 20:49:47] 2025-11-30 03:49:47,043 | INFO     | [monitor] control thread has ended
[2025-11-29 20:49:47] 2025-11-30 03:49:47,096 [wrapper] ==== pilot stdout END ====
[2025-11-29 20:49:47] 2025-11-30 03:49:47,097 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 20:49:47] 2025-11-30 03:49:47,099 [wrapper] pilotpid: 1078520
[2025-11-29 20:49:47] 2025-11-30 03:49:47,100 [wrapper] Pilot exit status: 0
[2025-11-29 20:49:47] 2025-11-30 03:49:47,105 [wrapper] pandaids: 6893857907
[2025-11-29 20:49:47] 2025-11-30 03:49:47,128 [wrapper] cleanup supervisor_pilot 1450709 1078521
[2025-11-29 20:49:47] 2025-11-30 03:49:47,130 [wrapper] Test setup, not cleaning
[2025-11-29 20:49:47] 2025-11-30 03:49:47,131 [wrapper] apfmon messages muted
[2025-11-29 20:49:47] 2025-11-30 03:49:47,133 [wrapper] ==== wrapper stdout END ====
[2025-11-29 20:49:47] 2025-11-30 03:49:47,134 [wrapper] ==== wrapper stderr END ====
[2025-11-29 20:49:47]  *** Error codes and diagnostics ***
[2025-11-29 20:49:47]     "exeErrorCode": 0,
[2025-11-29 20:49:47]     "exeErrorDiag": "",
[2025-11-29 20:49:47]     "pilotErrorCode": 0,
[2025-11-29 20:49:47]     "pilotErrorDiag": "",
[2025-11-29 20:49:47]  *** Listing of results directory ***
[2025-11-29 20:49:47] total 1299400
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc    576529 Nov 20 06:12 pilot3.tar.gz
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc      5112 Nov 20 06:16 queuedata.json
[2025-11-29 20:49:47] -rwx------ 1 boinc boinc     36292 Nov 20 06:17 runpilot2-wrapper.sh
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc       100 Nov 29 14:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 20:49:47] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 14:19 run_atlas
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc       105 Nov 29 14:19 job.xml
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc      9949 Nov 29 14:19 init_data.xml
[2025-11-29 20:49:47] -rw-r--r-- 2 boinc boinc 408800416 Nov 29 14:19 EVNT.47493127._000504.pool.root.1
[2025-11-29 20:49:47] -rw-r--r-- 2 boinc boinc     15847 Nov 29 14:19 start_atlas.sh
[2025-11-29 20:49:47] drwxrwx--x 2 boinc boinc      4096 Nov 29 14:19 shared
[2025-11-29 20:49:47] -rw-r--r-- 2 boinc boinc    590101 Nov 29 14:19 input.tar.gz
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc         0 Nov 29 14:19 boinc_lockfile
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc      2786 Nov 29 14:19 pandaJob.out
[2025-11-29 20:49:47] -rw------- 1 boinc boinc    991826 Nov 29 14:19 agis_schedconf.cvmfs.json
[2025-11-29 20:49:47] drwx------ 5 boinc boinc      4096 Nov 29 14:19 pilot3
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc       531 Nov 29 20:44 boinc_task_state.xml
[2025-11-29 20:49:47] -rw------- 1 boinc boinc 908631336 Nov 29 20:48 HITS.47523449._005040.pool.root.1
[2025-11-29 20:49:47] -rw------- 1 boinc boinc      1032 Nov 29 20:49 memory_monitor_summary.json
[2025-11-29 20:49:47] -rw------- 1 boinc boinc   1516240 Nov 29 20:49 agis_ddmendpoints.agis.ALL.json
[2025-11-29 20:49:47] -rw------- 1 boinc boinc   1226959 Nov 29 20:49 log.47523449._005040.job.log.tgz.1
[2025-11-29 20:49:47] -rw------- 1 boinc boinc      8556 Nov 29 20:49 heartbeat.json
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc        28 Nov 29 20:49 wrapper_checkpoint.txt
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc      8192 Nov 29 20:49 boinc_mmap_file
[2025-11-29 20:49:47] -rw------- 1 boinc boinc       822 Nov 29 20:49 pilotlog.txt
[2025-11-29 20:49:47] -rw------- 1 boinc boinc        95 Nov 29 20:49 pilot_heartbeat.json
[2025-11-29 20:49:47] -rw------- 1 boinc boinc   3389578 Nov 29 20:49 log.47523449._005040.job.log.1
[2025-11-29 20:49:47] -rw------- 1 boinc boinc       353 Nov 29 20:49 output.list
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc       620 Nov 29 20:49 runtime_log
[2025-11-29 20:49:47] -rw------- 1 boinc boinc   4638720 Nov 29 20:49 result.tar.gz
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc      8920 Nov 29 20:49 runtime_log.err
[2025-11-29 20:49:47] -rw------- 1 boinc boinc       660 Nov 29 20:49 qhMKDmKiJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7tHKDmynp2Vn.diag
[2025-11-29 20:49:47] -rw-r--r-- 1 boinc boinc     21401 Nov 29 20:49 stderr.txt
[2025-11-29 20:49:47] HITS file was successfully produced:
[2025-11-29 20:49:47] -rw------- 1 boinc boinc 908631336 Nov 29 20:48 shared/HITS.pool.root.1
[2025-11-29 20:49:47]  *** Contents of shared directory: ***
[2025-11-29 20:49:47] total 1291692
[2025-11-29 20:49:47] -rw-r--r-- 2 boinc boinc 408800416 Nov 29 14:19 ATLAS.root_0
[2025-11-29 20:49:47] -rw-r--r-- 2 boinc boinc     15847 Nov 29 14:19 start_atlas.sh
[2025-11-29 20:49:47] -rw-r--r-- 2 boinc boinc    590101 Nov 29 14:19 input.tar.gz
[2025-11-29 20:49:47] -rw------- 1 boinc boinc 908631336 Nov 29 20:48 HITS.pool.root.1
[2025-11-29 20:49:47] -rw------- 1 boinc boinc   4638720 Nov 29 20:49 result.tar.gz
20:49:49 (1074662): run_atlas exited; CPU time 92209.693090
20:49:49 (1074662): called boinc_finish(0)

</stderr_txt>
]]>

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